Wall clock time and date at job start Wed Apr 1 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32677 * 1 3 3 C 1.47666 * 120.00083 * 2 1 4 4 C 1.39710 * 119.99795 * 179.97438 * 3 2 1 5 5 C 1.37598 * 120.00464 * 180.02562 * 4 3 2 6 6 C 1.39746 * 119.99770 * 359.97438 * 5 4 3 7 7 C 1.47689 * 120.00705 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99855 * 335.44693 * 7 6 5 9 9 N 1.34772 * 119.99884 * 155.44834 * 7 6 5 10 10 C 1.47027 * 125.64682 * 174.23943 * 9 7 6 11 11 C 1.54327 * 107.27327 * 178.97981 * 10 9 7 12 12 H 1.08997 * 110.72070 * 96.34230 * 11 10 9 13 13 C 1.52999 * 110.71798 * 219.44819 * 11 10 9 14 14 N 1.46501 * 109.46885 * 293.53890 * 13 11 10 15 15 C 1.36931 * 120.00080 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00085 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00035 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00265 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47339 * 269.99894 * 19 17 15 21 21 H 1.48501 * 109.47143 * 30.00104 * 19 17 15 22 22 H 1.48508 * 109.46914 * 149.99769 * 19 17 15 23 23 C 1.55161 * 102.93876 * 337.80808 * 11 10 9 24 24 H 1.09001 * 111.00332 * 277.42889 * 23 11 10 25 25 O 1.42902 * 111.00199 * 153.57945 * 23 11 10 26 26 C 1.42901 * 113.99655 * 149.99827 * 25 23 11 27 27 C 1.53002 * 109.46669 * 179.97438 * 26 25 23 28 28 C 1.47427 * 125.65183 * 354.28309 * 9 7 6 29 29 C 1.39744 * 119.99143 * 0.25112 * 6 5 4 30 30 C 1.37600 * 119.99361 * 359.51355 * 29 6 5 31 31 H 1.07994 * 120.00412 * 0.02562 * 1 2 3 32 32 H 1.08008 * 119.99901 * 179.97438 * 1 2 3 33 33 H 1.08006 * 120.00217 * 180.02562 * 2 1 3 34 34 H 1.08000 * 119.99674 * 0.02704 * 4 3 2 35 35 H 1.08001 * 120.00397 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.87923 * 59.55884 * 10 9 7 37 37 H 1.08999 * 109.88335 * 298.39800 * 10 9 7 38 38 H 1.08996 * 109.46820 * 173.54611 * 13 11 10 39 39 H 1.08994 * 109.47275 * 53.54264 * 13 11 10 40 40 H 0.97001 * 120.00248 * 0.02562 * 14 13 11 41 41 H 0.97001 * 120.00464 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47538 * 299.99838 * 26 25 23 43 43 H 1.09004 * 109.47284 * 60.00346 * 26 25 23 44 44 H 1.09007 * 109.47053 * 299.99647 * 27 26 25 45 45 H 1.08993 * 109.47306 * 60.00015 * 27 26 25 46 46 H 1.09002 * 109.46967 * 180.02562 * 27 26 25 47 47 H 1.08993 * 110.36753 * 322.93272 * 28 9 7 48 48 H 1.09002 * 110.36596 * 85.14161 * 28 9 7 49 49 H 1.07998 * 120.00769 * 179.72347 * 29 6 5 50 50 H 1.08010 * 120.00153 * 180.25237 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4622 1.2787 0.0005 5 6 4.1504 2.4703 0.0011 6 6 3.4517 3.6806 0.0005 7 6 4.1901 4.9596 0.0017 8 8 5.3229 5.0071 0.4405 9 7 3.6082 6.0741 -0.4837 10 6 4.1775 7.4288 -0.4351 11 6 3.1744 8.3727 -1.1311 12 1 2.5298 8.8583 -0.3986 13 6 3.9091 9.4140 -1.9777 14 7 4.6697 10.3078 -1.1008 15 6 5.4110 11.3261 -1.6379 16 1 5.4353 11.4702 -2.7080 17 6 6.1321 12.1726 -0.8070 18 7 6.1029 11.9968 0.4970 19 14 7.1440 13.5614 -1.5398 20 1 8.5182 13.0759 -1.8243 21 1 6.5110 14.0229 -2.8014 22 1 7.2071 14.6897 -0.5762 23 6 2.3585 7.4089 -2.0326 24 1 2.8829 7.2102 -2.9673 25 8 1.0496 7.9254 -2.2817 26 6 0.5006 7.5343 -3.5418 27 6 -0.8951 8.1408 -3.7002 28 6 2.2949 6.1370 -1.1506 29 6 2.0543 3.6805 0.0048 30 6 1.3665 2.4888 -0.0007 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5400 -0.9354 -0.0004 33 1 1.8668 -0.9353 -0.0004 34 1 4.0021 0.3434 0.0005 35 1 5.2304 2.4702 0.0011 36 1 5.1319 7.4488 -0.9612 37 1 4.3169 7.7353 0.6016 38 1 3.1845 9.9950 -2.5483 39 1 4.5909 8.9101 -2.6626 40 1 4.6481 10.1782 -0.1397 41 1 6.6071 12.5881 1.0776 42 1 1.1452 7.8905 -4.3453 43 1 0.4312 6.4474 -3.5863 44 1 -1.5396 7.7842 -2.8966 45 1 -0.8262 9.2277 -3.6555 46 1 -1.3141 7.8422 -4.6611 47 1 2.1411 5.2532 -1.7698 48 1 1.4982 6.2250 -0.4120 49 1 1.5142 4.6157 0.0089 50 1 0.2864 2.4886 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316691591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:10 Heat of formation + Delta-G solvation = -10.818379 kcal Electronic energy + Delta-G solvation = -29785.068606 eV Core-core repulsion = 25778.490095 eV Total energy + Delta-G solvation = -4006.578511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67889 -39.28221 -38.24044 -36.62125 -34.83173 -34.44826 -32.43795 -31.43914 -31.26887 -30.18517 -29.33520 -28.36665 -25.85121 -24.31515 -23.48613 -22.97177 -22.80504 -21.78746 -20.60348 -20.00483 -19.71317 -17.72635 -17.23196 -16.98928 -16.70921 -15.94592 -15.71265 -15.52773 -15.08687 -14.82933 -14.67500 -14.35411 -14.12798 -13.76411 -13.66246 -13.45408 -13.38450 -13.26435 -13.08838 -12.83044 -12.77045 -12.55032 -12.31251 -12.11823 -11.76675 -11.66783 -11.49931 -11.18066 -11.12859 -11.03799 -10.77486 -10.73732 -10.66992 -10.43758 -10.10202 -9.94639 -9.75284 -9.49942 -9.28433 -8.86611 -8.70035 -8.50693 -6.91691 -5.73990 -3.03431 0.28894 1.09306 1.92906 2.78627 2.90146 3.46068 3.50548 3.52598 3.58702 3.66276 4.24251 4.32567 4.39425 4.45046 4.59422 4.61471 4.76743 4.82661 4.91725 4.93595 5.02917 5.06175 5.10146 5.20309 5.22675 5.32250 5.33633 5.40437 5.50153 5.58438 5.64767 5.66442 5.71054 5.77875 5.82868 5.91115 5.92629 5.99571 6.06281 6.07497 6.15202 6.25987 6.30212 6.35638 6.36651 6.57767 6.69340 6.75191 7.16465 7.46181 7.71665 8.12706 8.43937 9.55413 10.11304 10.46107 11.48690 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.002549 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.253603 B =10981.939044 C =12894.227880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.122 4.122 3 C -0.041 4.041 4 C -0.117 4.117 5 C -0.061 4.061 6 C -0.125 4.125 7 C 0.569 3.431 8 O -0.529 6.529 9 N -0.610 5.610 10 C 0.118 3.882 11 C -0.100 4.100 12 H 0.097 0.903 13 C 0.166 3.834 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.282 1.282 22 H -0.291 1.291 23 C 0.083 3.917 24 H 0.083 0.917 25 O -0.366 6.366 26 C 0.054 3.946 27 C -0.151 4.151 28 C 0.078 3.922 29 C -0.095 4.095 30 C -0.123 4.123 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.028 0.972 39 H 0.020 0.980 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.141 0.859 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 -23.950 -5.122 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 C -0.041 4.041 4 C -0.135 4.135 5 C -0.079 4.079 6 C -0.128 4.128 7 C 0.359 3.641 8 O -0.406 6.406 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.120 4.120 12 H 0.115 0.885 13 C 0.038 3.962 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.208 1.208 22 H -0.218 1.218 23 C 0.024 3.976 24 H 0.100 0.900 25 O -0.284 6.284 26 C -0.023 4.023 27 C -0.208 4.208 28 C -0.046 4.046 29 C -0.113 4.113 30 C -0.141 4.141 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.038 0.962 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.158 0.842 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.503 -23.721 -4.843 28.748 hybrid contribution 0.643 0.562 -0.185 0.874 sum -14.860 -23.158 -5.028 27.972 Atomic orbital electron populations 1.24464 0.95678 1.02474 0.98383 1.21841 0.95277 0.95752 1.01124 1.19319 0.93413 0.93266 0.98096 1.21217 0.93168 0.98120 1.01030 1.21200 1.00778 0.90690 0.95275 1.19994 0.93811 0.93469 1.05569 1.17930 0.85590 0.82535 0.78069 1.90824 1.17746 1.85227 1.46842 1.48253 1.19967 1.08043 1.58159 1.22106 0.97459 0.78635 1.02191 1.22581 0.95921 0.95396 0.98072 0.88456 1.20619 0.93061 0.90067 0.92469 1.42325 1.55920 1.33794 1.05538 1.19189 1.20718 1.05276 0.91993 0.91184 1.24749 1.00970 0.99800 0.95383 1.69654 1.45913 1.40527 1.01880 0.86187 0.80289 0.81866 0.77811 1.21714 1.20786 1.21776 1.23252 0.84133 0.92347 0.97912 0.89956 1.87971 1.30406 1.73150 1.36870 1.22559 0.95486 0.98210 0.86001 1.21739 0.94986 1.02271 1.01848 1.23015 0.85973 0.99259 0.96307 1.21774 0.93227 0.99295 0.97029 1.21236 1.00073 0.91433 1.01378 0.87872 0.87600 0.86200 0.85153 0.84607 0.89963 0.90400 0.95421 0.96226 0.78164 0.93466 0.93011 0.93562 0.91942 0.91549 0.91269 0.90225 0.90015 0.84200 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 14.15 28.84 0.41 -0.52 16 2 C -0.12 -0.80 9.90 -37.62 -0.37 -1.17 16 3 C -0.04 -0.35 5.87 -104.95 -0.62 -0.96 16 4 C -0.12 -1.05 9.76 -39.27 -0.38 -1.44 16 5 C -0.06 -0.68 9.57 -39.25 -0.38 -1.06 16 6 C -0.13 -1.56 5.67 -104.91 -0.59 -2.16 16 7 C 0.57 8.96 7.63 -12.40 -0.09 8.87 16 8 O -0.53 -10.39 16.92 5.31 0.09 -10.30 16 9 N -0.61 -8.89 3.33 -171.69 -0.57 -9.46 16 10 C 0.12 1.99 6.16 -3.06 -0.02 1.97 16 11 C -0.10 -1.62 2.75 -88.78 -0.24 -1.86 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 C 0.17 3.29 5.58 -4.04 -0.02 3.27 16 14 N -0.73 -18.52 5.45 -59.91 -0.33 -18.84 16 15 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 19 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 C 0.08 1.06 2.99 -24.58 -0.07 0.98 16 24 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 25 O -0.37 -4.60 10.15 -35.23 -0.36 -4.96 16 26 C 0.05 0.51 6.49 37.16 0.24 0.76 16 27 C -0.15 -1.25 10.28 37.16 0.38 -0.86 16 28 C 0.08 0.88 4.73 -2.53 -0.01 0.87 16 29 C -0.10 -0.95 8.05 -39.25 -0.32 -1.27 16 30 C -0.12 -1.05 9.38 -39.26 -0.37 -1.42 16 31 H 0.10 0.50 6.02 -52.49 -0.32 0.18 16 32 H 0.11 0.40 8.06 -52.48 -0.42 -0.02 16 33 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 1.53 7.83 -52.49 -0.41 1.12 16 36 H 0.08 1.56 7.77 -51.93 -0.40 1.16 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 40 H 0.38 10.25 7.52 -40.82 -0.31 9.94 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.05 0.49 8.12 -51.93 -0.42 0.06 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.76 6.84 -51.93 -0.36 0.40 16 48 H 0.08 0.85 6.81 -51.93 -0.35 0.49 16 49 H 0.14 1.25 4.60 -52.49 -0.24 1.01 16 50 H 0.13 0.81 6.15 -52.48 -0.32 0.49 16 LS Contribution 409.01 15.07 6.16 6.16 Total: -1.00 -34.04 409.01 -9.73 -43.78 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.73 Total: 7.15 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.71 Total: -3.40 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.17 Total: -56.12 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.27 Total: -15.25 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.04 -9.73 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316691591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.960 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds