Wall clock time and date at job start Wed Apr 1 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.46848 * 110.99510 * 294.21467 * 7 6 5 9 9 C 1.53048 * 109.52064 * 174.15537 * 8 7 6 10 10 C 1.53118 * 109.27745 * 59.17773 * 9 8 7 11 11 N 1.46497 * 109.57312 * 182.41068 * 10 9 8 12 12 C 1.46497 * 120.00439 * 59.71382 * 11 10 9 13 13 C 1.34777 * 119.99710 * 239.71455 * 11 10 9 14 14 O 1.21281 * 120.00309 * 359.97438 * 13 11 10 15 15 C 1.50701 * 119.99844 * 180.02562 * 13 11 10 16 16 S 1.81002 * 109.47067 * 180.02562 * 15 13 11 17 17 C 1.76200 * 100.00008 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99786 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00157 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99576 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47160 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46913 * 120.00000 * 21 19 17 24 24 H 1.48500 * 109.46780 * 240.00240 * 21 19 17 25 25 C 1.53120 * 109.16026 * 302.34502 * 10 9 8 26 26 C 1.46844 * 111.00526 * 170.00090 * 7 6 5 27 27 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 28 28 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 29 29 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 31 31 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 32 32 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 33 33 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00307 * 5 4 3 35 35 H 1.08998 * 109.47533 * 59.99936 * 5 4 3 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 38 38 H 1.08996 * 109.46339 * 294.16557 * 8 7 6 39 39 H 1.08994 * 109.46869 * 54.14232 * 8 7 6 40 40 H 1.08998 * 109.49998 * 299.23732 * 9 8 7 41 41 H 1.08994 * 109.50211 * 179.11499 * 9 8 7 42 42 H 1.09002 * 109.52451 * 62.24612 * 10 9 8 43 43 H 1.09003 * 109.47153 * 89.99492 * 12 11 10 44 44 H 1.09003 * 109.47572 * 209.99954 * 12 11 10 45 45 H 1.09007 * 109.46916 * 330.00492 * 12 11 10 46 46 H 1.09007 * 109.46745 * 299.99516 * 15 13 11 47 47 H 1.08994 * 109.47677 * 59.99865 * 15 13 11 48 48 H 0.97003 * 119.99499 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.50479 * 297.71302 * 25 10 9 50 50 H 1.08998 * 109.50625 * 177.59615 * 25 10 9 51 51 H 1.09003 * 109.46077 * 305.85847 * 26 7 6 52 52 H 1.08995 * 109.45945 * 65.83669 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3505 3.0592 0.0012 7 7 5.7294 4.4785 0.0011 8 6 5.3218 5.1319 -1.2493 9 6 5.5997 6.6340 -1.1556 10 6 7.0937 6.8570 -0.9047 11 7 7.3579 8.2903 -0.7567 12 6 6.6992 9.0504 0.3085 13 6 8.2070 8.9097 -1.6004 14 8 8.7526 8.2804 -2.4820 15 6 8.4792 10.3840 -1.4478 16 16 9.6510 10.9161 -2.7206 17 6 9.7838 12.6264 -2.3184 18 1 9.2218 13.0315 -1.4899 19 6 10.6108 13.4531 -3.0663 20 7 11.2954 12.9594 -4.0764 21 14 10.7521 15.2662 -2.6395 22 1 9.8871 15.5685 -1.4709 23 1 12.1633 15.5880 -2.3078 24 1 10.3178 16.0834 -3.8008 25 6 7.5026 6.1262 0.3772 26 6 7.1695 4.6389 0.2391 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8333 0.9767 0.8908 33 1 3.8340 0.9765 -0.8892 34 1 3.4229 3.4222 -0.8888 35 1 3.4223 3.4217 0.8911 36 1 5.7533 2.5753 0.8909 37 1 5.7533 2.5761 -0.8891 38 1 5.8862 4.7093 -2.0805 39 1 4.2567 4.9693 -1.4137 40 1 5.0251 7.0597 -0.3331 41 1 5.3117 7.1163 -2.0896 42 1 7.6666 6.4658 -1.7455 43 1 7.3178 9.0294 1.2057 44 1 6.5613 10.0826 -0.0136 45 1 5.7285 8.6048 0.5259 46 1 7.5473 10.9388 -1.5577 47 1 8.9019 10.5753 -0.4615 48 1 11.8736 13.5370 -4.5988 49 1 6.9578 6.5441 1.2239 50 1 8.5739 6.2457 0.5383 51 1 7.4463 4.1180 1.1558 52 1 7.7251 4.2188 -0.5992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316929677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:48 Heat of formation + Delta-G solvation = -88.568170 kcal Electronic energy + Delta-G solvation = -27520.653677 eV Core-core repulsion = 23646.147634 eV Total energy + Delta-G solvation = -3874.506043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14610 -38.85961 -38.29511 -35.83763 -33.89495 -32.41834 -32.05741 -31.15502 -30.53343 -28.79357 -26.91599 -25.62576 -25.33268 -23.66251 -23.25534 -22.96876 -21.24625 -19.98072 -19.09690 -17.63221 -17.24845 -16.84370 -16.71166 -16.34522 -15.66885 -15.40105 -15.27676 -14.92709 -14.79615 -14.60552 -14.26965 -14.05631 -13.76422 -13.46949 -13.23506 -13.10381 -13.00282 -12.96088 -12.61431 -12.43786 -12.21674 -12.12078 -12.00904 -11.94697 -11.78228 -11.42169 -11.36308 -11.28699 -11.21239 -11.06474 -11.00637 -10.76438 -10.66995 -10.55258 -10.03604 -9.77801 -9.30815 -9.06353 -8.63366 -8.45662 -8.20505 -6.48740 -6.20763 -3.91014 2.95391 3.07528 3.07991 3.22185 3.27188 3.32007 3.62340 3.68829 4.21351 4.45660 4.53466 4.56569 4.63947 4.67486 4.79352 4.84457 4.86544 4.90185 4.97541 5.00004 5.04820 5.09080 5.13401 5.14609 5.19796 5.25521 5.29662 5.33600 5.42892 5.44249 5.49380 5.50154 5.58666 5.62321 5.64447 5.72205 5.75723 5.80673 5.84441 5.90076 5.92246 6.05076 6.16063 6.21814 6.69319 6.74788 6.79320 6.81681 7.58770 7.61356 8.36530 8.59413 9.24758 10.86769 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.001521 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.616117 B =18408.693551 C =18510.601827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.116 4.116 6 C 0.059 3.941 7 N -0.538 5.538 8 C 0.056 3.944 9 C -0.125 4.125 10 C 0.140 3.860 11 N -0.619 5.619 12 C 0.079 3.921 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.149 4.149 16 S -0.063 6.063 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.123 4.123 26 C 0.060 3.940 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.267 0.733 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.160 -24.203 12.197 32.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.069 4.069 7 N -0.262 5.262 8 C -0.073 4.073 9 C -0.164 4.164 10 C 0.036 3.964 11 N -0.354 5.354 12 C -0.065 4.065 13 C 0.322 3.678 14 O -0.394 6.394 15 C -0.300 4.300 16 S 0.163 5.837 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.162 4.162 26 C -0.068 4.068 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.096 0.904 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.581 -24.689 11.124 32.286 hybrid contribution 0.062 1.279 0.714 1.466 sum -17.518 -23.411 11.838 31.545 Atomic orbital electron populations 1.21747 0.93678 1.02266 1.03250 1.22455 0.95686 0.83785 1.00008 1.87887 1.21177 1.26442 1.95429 1.22432 0.81237 0.97564 1.00069 1.21503 0.95092 0.94586 1.04192 1.21943 0.95050 0.88831 1.01067 1.61909 1.16114 1.12856 1.35361 1.22124 1.01024 0.94204 0.89909 1.21946 0.96265 0.95377 1.02769 1.21037 0.95861 0.80694 0.98809 1.47881 1.46180 1.08655 1.32677 1.21746 0.97481 0.96899 0.90332 1.20362 0.77645 0.89314 0.80512 1.90678 1.48994 1.66826 1.32866 1.23554 1.05640 0.94020 1.06762 1.85392 1.52908 1.08591 1.36776 1.22903 1.32001 0.93848 1.19443 0.90904 1.24989 0.94689 0.99373 0.94514 1.70032 1.26475 1.36001 1.17802 0.86123 0.78079 0.82904 0.78432 1.19600 1.20574 1.20579 1.21930 1.01678 0.94194 0.98417 1.22041 0.87110 0.96758 1.00900 0.91789 0.91793 0.91101 0.93467 0.93452 0.93313 0.93478 0.90926 0.90130 0.90562 0.94646 0.94519 0.90076 0.90654 0.90936 0.88425 0.92824 0.90753 0.91134 0.89259 0.89278 0.92264 0.90714 0.90956 0.90430 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.34 6.66 37.16 0.25 0.59 16 3 O -0.39 -3.33 10.34 -35.23 -0.36 -3.69 16 4 C 0.06 0.43 5.94 37.16 0.22 0.65 16 5 C -0.12 -0.82 5.51 -26.74 -0.15 -0.97 16 6 C 0.06 0.42 4.96 -3.83 -0.02 0.40 16 7 N -0.54 -4.65 4.66 -234.67 -1.09 -5.75 16 8 C 0.06 0.51 5.29 -3.83 -0.02 0.49 16 9 C -0.12 -1.31 5.40 -26.65 -0.14 -1.45 16 10 C 0.14 1.76 2.59 -67.81 -0.18 1.58 16 11 N -0.62 -8.91 2.77 -173.79 -0.48 -9.39 16 12 C 0.08 0.86 9.26 59.85 0.55 1.41 16 13 C 0.53 10.32 7.69 -10.98 -0.08 10.24 16 14 O -0.52 -12.03 15.19 5.56 0.08 -11.94 16 15 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 16 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 17 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C -0.12 -1.28 5.41 -26.65 -0.14 -1.42 16 26 C 0.06 0.54 5.46 -3.83 -0.02 0.51 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.47 7.99 -51.93 -0.41 0.06 16 37 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.68 6.21 -51.93 -0.32 0.35 16 40 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.49 6.90 -51.93 -0.36 1.13 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 45 H 0.07 0.63 6.38 -51.93 -0.33 0.30 16 46 H 0.09 1.71 7.40 -51.91 -0.38 1.32 16 47 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 48 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.07 0.74 7.60 -51.93 -0.39 0.34 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.08 0.59 8.02 -51.93 -0.42 0.18 16 52 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 419.92 15.07 6.33 6.33 Total: -1.00 -34.39 419.92 -10.53 -44.91 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -9.51 Total: -3.18 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 1.02 Total: -4.25 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.84 Total: -40.69 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.28 Total: -15.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.39 -10.53 -44.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316929677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.655 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds