Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.46848 * 110.99510 * 294.21467 * 7 6 5 9 9 C 1.53048 * 109.52064 * 174.15537 * 8 7 6 10 10 C 1.53118 * 109.27745 * 59.17773 * 9 8 7 11 11 N 1.46497 * 109.57312 * 182.41068 * 10 9 8 12 12 C 1.46497 * 120.00439 * 59.71382 * 11 10 9 13 13 C 1.34777 * 119.99710 * 239.71455 * 11 10 9 14 14 O 1.21281 * 120.00309 * 359.97438 * 13 11 10 15 15 C 1.50701 * 119.99844 * 180.02562 * 13 11 10 16 16 S 1.81002 * 109.47067 * 180.02562 * 15 13 11 17 17 C 1.76200 * 100.00008 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99786 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00157 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99576 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47160 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46913 * 120.00000 * 21 19 17 24 24 H 1.48500 * 109.46780 * 240.00240 * 21 19 17 25 25 C 1.53120 * 109.16026 * 302.34502 * 10 9 8 26 26 C 1.46844 * 111.00526 * 170.00090 * 7 6 5 27 27 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 28 28 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 29 29 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 31 31 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 32 32 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 33 33 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00307 * 5 4 3 35 35 H 1.08998 * 109.47533 * 59.99936 * 5 4 3 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 38 38 H 1.08996 * 109.46339 * 294.16557 * 8 7 6 39 39 H 1.08994 * 109.46869 * 54.14232 * 8 7 6 40 40 H 1.08998 * 109.49998 * 299.23732 * 9 8 7 41 41 H 1.08994 * 109.50211 * 179.11499 * 9 8 7 42 42 H 1.09002 * 109.52451 * 62.24612 * 10 9 8 43 43 H 1.09003 * 109.47153 * 89.99492 * 12 11 10 44 44 H 1.09003 * 109.47572 * 209.99954 * 12 11 10 45 45 H 1.09007 * 109.46916 * 330.00492 * 12 11 10 46 46 H 1.09007 * 109.46745 * 299.99516 * 15 13 11 47 47 H 1.08994 * 109.47677 * 59.99865 * 15 13 11 48 48 H 0.97003 * 119.99499 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.50479 * 297.71302 * 25 10 9 50 50 H 1.08998 * 109.50625 * 177.59615 * 25 10 9 51 51 H 1.09003 * 109.46077 * 305.85847 * 26 7 6 52 52 H 1.08995 * 109.45945 * 65.83669 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3505 3.0592 0.0012 7 7 5.7294 4.4785 0.0011 8 6 5.3218 5.1319 -1.2493 9 6 5.5997 6.6340 -1.1556 10 6 7.0937 6.8570 -0.9047 11 7 7.3579 8.2903 -0.7567 12 6 6.6992 9.0504 0.3085 13 6 8.2070 8.9097 -1.6004 14 8 8.7526 8.2804 -2.4820 15 6 8.4792 10.3840 -1.4478 16 16 9.6510 10.9161 -2.7206 17 6 9.7838 12.6264 -2.3184 18 1 9.2218 13.0315 -1.4899 19 6 10.6108 13.4531 -3.0663 20 7 11.2954 12.9594 -4.0764 21 14 10.7521 15.2662 -2.6395 22 1 9.8871 15.5685 -1.4709 23 1 12.1633 15.5880 -2.3078 24 1 10.3178 16.0834 -3.8008 25 6 7.5026 6.1262 0.3772 26 6 7.1695 4.6389 0.2391 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8333 0.9767 0.8908 33 1 3.8340 0.9765 -0.8892 34 1 3.4229 3.4222 -0.8888 35 1 3.4223 3.4217 0.8911 36 1 5.7533 2.5753 0.8909 37 1 5.7533 2.5761 -0.8891 38 1 5.8862 4.7093 -2.0805 39 1 4.2567 4.9693 -1.4137 40 1 5.0251 7.0597 -0.3331 41 1 5.3117 7.1163 -2.0896 42 1 7.6666 6.4658 -1.7455 43 1 7.3178 9.0294 1.2057 44 1 6.5613 10.0826 -0.0136 45 1 5.7285 8.6048 0.5259 46 1 7.5473 10.9388 -1.5577 47 1 8.9019 10.5753 -0.4615 48 1 11.8736 13.5370 -4.5988 49 1 6.9578 6.5441 1.2239 50 1 8.5739 6.2457 0.5383 51 1 7.4463 4.1180 1.1558 52 1 7.7251 4.2188 -0.5992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316929677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = -111.161919 kcal Electronic energy + Delta-G solvation = -27521.633416 eV Core-core repulsion = 23646.147634 eV Total energy + Delta-G solvation = -3875.485782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29058 -39.80136 -38.96286 -36.96099 -34.73423 -34.58724 -32.78323 -31.93055 -31.32248 -30.12918 -27.91209 -27.68750 -26.22502 -24.43610 -23.85672 -23.65314 -21.88778 -21.05256 -20.31802 -19.55666 -18.16137 -17.82275 -17.33718 -17.29828 -16.88604 -16.78906 -16.45598 -16.13162 -15.91319 -15.58351 -15.22829 -14.94163 -14.78688 -14.62461 -14.46949 -14.20518 -14.05999 -13.75468 -13.54862 -13.46013 -13.21464 -13.15722 -13.08436 -12.91693 -12.71039 -12.63295 -12.53110 -12.37582 -12.18862 -12.09065 -11.89179 -11.85153 -11.72455 -11.51967 -11.37433 -11.16055 -10.85077 -10.53639 -10.26926 -9.65126 -9.33907 -8.68055 -8.35020 -6.13466 1.25495 1.41397 1.45802 1.56177 1.57481 2.10007 2.27128 2.54289 2.99368 3.05624 3.26092 3.60974 3.78480 3.86497 3.98517 4.03299 4.11822 4.17375 4.18059 4.20105 4.27271 4.30034 4.37749 4.42744 4.44247 4.48776 4.49055 4.49788 4.53694 4.64419 4.66843 4.68563 4.72974 4.84745 4.89820 4.90788 4.97453 5.02534 5.03103 5.15325 5.19478 5.22504 5.27924 5.32568 5.41761 5.60132 6.05735 6.08306 6.19779 6.29013 6.30771 7.06346 7.14032 8.74618 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034878 B = 0.001521 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.616117 B =18408.693551 C =18510.601827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.415 6.415 4 C 0.063 3.937 5 C -0.108 4.108 6 C 0.062 3.938 7 N -0.538 5.538 8 C 0.059 3.941 9 C -0.116 4.116 10 C 0.136 3.864 11 N -0.605 5.605 12 C 0.070 3.930 13 C 0.530 3.470 14 O -0.570 6.570 15 C -0.122 4.122 16 S -0.155 6.155 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.115 4.115 26 C 0.063 3.937 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.026 0.974 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.271 0.729 49 H 0.089 0.911 50 H 0.061 0.939 51 H 0.097 0.903 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.885 -24.291 14.851 34.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.335 6.335 4 C -0.014 4.014 5 C -0.146 4.146 6 C -0.066 4.066 7 N -0.263 5.263 8 C -0.069 4.069 9 C -0.155 4.155 10 C 0.033 3.967 11 N -0.337 5.337 12 C -0.072 4.072 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.273 4.273 16 S 0.072 5.928 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.153 4.153 26 C -0.065 4.065 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.108 0.892 50 H 0.080 0.920 51 H 0.116 0.884 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -19.352 -24.804 13.828 34.365 hybrid contribution 0.506 1.177 -0.049 1.282 sum -18.846 -23.627 13.779 33.215 Atomic orbital electron populations 1.21774 0.93220 1.03293 1.02598 1.22632 0.96171 0.82945 1.00830 1.87852 1.22095 1.27974 1.95608 1.22478 0.80685 0.97281 1.00919 1.21409 0.94955 0.94915 1.03336 1.21967 0.95004 0.87825 1.01806 1.61931 1.15734 1.13941 1.34671 1.22075 1.01562 0.93240 0.90031 1.21868 0.94477 0.96439 1.02687 1.21183 0.96965 0.79509 0.99039 1.47900 1.44318 1.09592 1.31929 1.22067 0.98861 0.96755 0.89533 1.20187 0.78378 0.88735 0.80896 1.90662 1.51408 1.67505 1.35281 1.23371 1.04177 0.95216 1.04550 1.85592 1.56199 1.09880 1.41084 1.23223 1.32337 0.93824 1.19817 0.89904 1.26131 0.93964 1.04873 0.94107 1.70196 1.27388 1.38115 1.19154 0.84899 0.78447 0.75882 0.78684 1.17925 1.19906 1.19939 1.21852 1.01173 0.95028 0.97279 1.22028 0.87273 0.95707 1.01514 0.92309 0.92536 0.89269 0.92781 0.92438 0.92130 0.92907 0.91827 0.90853 0.89133 0.94553 0.95598 0.88931 0.89125 0.92161 0.91802 0.91065 0.90606 0.88344 0.87412 0.87490 0.92003 0.89220 0.92029 0.88432 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.05 0.54 6.66 71.98 0.48 1.02 16 3 O -0.41 -6.61 10.34 -148.98 -1.54 -8.15 16 4 C 0.06 0.74 5.94 71.98 0.43 1.17 16 5 C -0.11 -1.36 5.51 30.59 0.17 -1.19 16 6 C 0.06 0.74 4.96 86.30 0.43 1.17 16 7 N -0.54 -8.22 4.66 -896.37 -4.17 -12.40 16 8 C 0.06 1.02 5.29 86.33 0.46 1.48 16 9 C -0.12 -2.29 5.40 30.65 0.17 -2.13 16 10 C 0.14 3.37 2.59 45.07 0.12 3.48 16 11 N -0.60 -16.82 2.77 -822.14 -2.28 -19.10 16 12 C 0.07 1.31 9.26 127.77 1.18 2.50 16 13 C 0.53 20.75 7.69 87.66 0.67 21.42 16 14 O -0.57 -27.66 15.19 -3.03 -0.05 -27.70 16 15 C -0.12 -5.02 4.71 71.24 0.34 -4.68 16 16 S -0.15 -8.77 20.57 -56.49 -1.16 -9.94 16 17 C -0.54 -31.37 9.50 67.96 0.65 -30.72 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.80 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 21 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.11 -2.20 5.41 30.65 0.17 -2.03 16 26 C 0.06 1.01 5.46 86.33 0.47 1.48 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.86 7.99 -2.39 -0.02 0.84 16 37 H 0.04 0.45 8.12 -2.39 -0.02 0.43 16 38 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 1.41 6.21 -2.39 -0.01 1.39 16 40 H 0.09 1.52 6.57 -2.39 -0.02 1.51 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 2.04 6.90 -2.39 -0.02 2.03 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.45 6.44 -2.39 -0.02 1.44 16 45 H 0.10 1.36 6.38 -2.38 -0.02 1.34 16 46 H 0.11 4.00 7.40 -2.39 -0.02 3.99 16 47 H 0.11 3.99 8.11 -2.40 -0.02 3.97 16 48 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 49 H 0.09 1.48 7.60 -2.38 -0.02 1.46 16 50 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.10 1.22 8.02 -2.39 -0.02 1.20 16 52 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -77.61 419.92 0.91 -76.70 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.87 Total: 17.35 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 6.92 Total: -6.39 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -6.16 Total: -87.70 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.59 Total: -35.85 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -77.61 0.91 -76.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316929677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.461 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds