Wall clock time and date at job start Wed Apr 1 2020 02:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 5 5 O 1.21279 * 119.99753 * 180.02562 * 4 3 2 6 6 C 1.50693 * 120.00154 * 0.02562 * 4 3 2 7 7 C 1.52997 * 109.47221 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.66688 * 305.69959 * 7 6 4 9 9 C 1.54706 * 110.75278 * 182.48382 * 7 6 4 10 10 C 1.51644 * 101.93090 * 216.39281 * 9 7 6 11 11 C 1.37740 * 132.17069 * 195.40441 * 10 9 7 12 12 C 1.38353 * 119.97464 * 179.63850 * 11 10 9 13 13 C 1.38292 * 119.76428 * 0.02562 * 12 11 10 14 14 C 1.37919 * 120.35448 * 0.16560 * 13 12 11 15 15 C 1.38878 * 107.04014 * 15.38218 * 10 9 7 16 16 O 1.36386 * 111.32074 * 0.91756 * 15 10 9 17 17 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 18 18 H 1.09005 * 110.88485 * 356.12157 * 17 3 2 19 19 C 1.55162 * 111.00070 * 119.99657 * 17 3 2 20 20 C 1.54321 * 102.93997 * 153.57827 * 19 17 3 21 21 N 1.47027 * 107.27262 * 337.80475 * 20 19 17 22 22 C 1.36937 * 125.65178 * 178.98249 * 21 20 19 23 23 H 1.07994 * 120.00233 * 179.97438 * 22 21 20 24 24 C 1.38818 * 119.99819 * 359.97438 * 22 21 20 25 25 N 1.31616 * 120.00002 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99981 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46996 * 59.99681 * 26 24 22 28 28 H 1.48497 * 109.47157 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46942 * 299.99741 * 26 24 22 30 30 C 1.47429 * 108.70231 * 358.94519 * 21 20 19 31 31 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 36 36 H 1.09001 * 109.47525 * 300.00358 * 6 4 3 37 37 H 1.09002 * 109.47555 * 59.99795 * 6 4 3 38 38 H 1.09000 * 110.93712 * 334.55255 * 9 7 6 39 39 H 1.08998 * 110.94095 * 98.23149 * 9 7 6 40 40 H 1.07997 * 120.01707 * 359.66168 * 11 10 9 41 41 H 1.07999 * 120.11781 * 179.97438 * 12 11 10 42 42 H 1.07998 * 119.82058 * 180.14740 * 13 12 11 43 43 H 1.08001 * 119.88352 * 179.97438 * 14 13 12 44 44 H 1.08997 * 110.71870 * 271.94118 * 19 17 3 45 45 H 1.09001 * 110.72037 * 35.21876 * 19 17 3 46 46 H 1.08993 * 109.88675 * 97.22391 * 20 19 17 47 47 H 1.08998 * 109.88479 * 218.23446 * 20 19 17 48 48 H 0.96993 * 120.00113 * 180.02562 * 25 24 22 49 49 H 1.09000 * 110.36382 * 265.28672 * 30 21 20 50 50 H 1.08999 * 110.36703 * 142.96397 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6469 3.1600 1.1673 6 6 1.9924 1.3059 2.4723 7 6 2.3231 2.2435 3.6352 8 1 3.3378 2.6303 3.5409 9 6 2.1353 1.5225 4.9911 10 6 1.5892 2.6352 5.8648 11 6 1.4616 2.7604 7.2305 12 6 0.9228 3.9141 7.7716 13 6 0.5136 4.9378 6.9366 14 6 0.6368 4.8128 5.5686 15 6 1.1760 3.6536 5.0158 16 8 1.3725 3.3196 3.7082 17 6 2.2626 2.0718 -1.2687 18 1 2.0990 1.4024 -2.1133 19 6 1.3816 3.3435 -1.3882 20 6 2.2023 4.2447 -2.3346 21 7 3.5997 3.7927 -2.2652 22 6 4.6457 4.3216 -2.9732 23 1 5.6397 3.9175 -2.8509 24 6 4.4284 5.3771 -3.8482 25 7 3.2169 5.8693 -3.9976 26 14 5.8553 6.0990 -4.8136 27 1 6.4597 5.0444 -5.6667 28 1 5.3628 7.2068 -5.6711 29 1 6.8779 6.6193 -3.8707 30 6 3.6883 2.6764 -1.3063 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 0.9446 1.0113 2.5303 37 1 2.6228 0.4186 2.5299 38 1 1.4163 0.7080 4.9028 39 1 3.0887 1.1586 5.3742 40 1 1.7824 1.9585 7.8789 41 1 0.8213 4.0146 8.8421 42 1 0.0950 5.8397 7.3581 43 1 0.3144 5.6169 4.9237 44 1 0.4140 3.1023 -1.8281 45 1 1.2566 3.8188 -0.4152 46 1 1.8311 4.1464 -3.3546 47 1 2.1299 5.2836 -2.0126 48 1 3.0649 6.6066 -4.6093 49 1 3.9702 3.0450 -0.3200 50 1 4.4063 1.9337 -1.6541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318469520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:06 Heat of formation + Delta-G solvation = -1.576350 kcal Electronic energy + Delta-G solvation = -30725.395896 eV Core-core repulsion = 26719.218150 eV Total energy + Delta-G solvation = -4006.177746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32686 -39.94992 -37.64791 -36.65900 -35.48157 -33.34991 -32.37052 -31.31845 -30.28453 -30.15670 -28.94743 -27.75701 -26.45708 -24.35757 -23.51772 -22.68314 -22.09575 -21.80952 -20.71825 -19.94517 -18.60244 -17.66264 -17.03153 -16.85419 -16.76673 -15.98093 -15.83383 -15.11932 -14.98105 -14.50230 -14.27077 -14.08572 -13.83556 -13.65512 -13.60179 -13.33237 -13.26937 -13.08378 -12.72505 -12.58151 -12.37429 -12.13329 -11.93214 -11.88758 -11.78178 -11.69175 -11.61474 -11.20955 -11.00559 -10.85517 -10.82913 -10.75806 -10.56247 -10.18879 -10.03529 -9.82068 -9.55833 -9.08459 -9.01011 -8.50565 -8.26866 -8.24705 -6.64856 -5.58294 -2.90562 1.10252 1.22389 2.88136 3.11196 3.16303 3.47984 3.51774 3.53459 3.55324 4.15062 4.21740 4.60219 4.62281 4.65606 4.76345 4.81087 4.87739 4.90485 5.07369 5.11416 5.20275 5.21651 5.27146 5.30778 5.42781 5.54293 5.55195 5.59680 5.62206 5.68480 5.70604 5.72484 5.88946 5.90618 5.98463 6.10428 6.14356 6.25087 6.29546 6.31727 6.48447 6.59044 6.68177 6.76782 6.83455 7.11822 7.32001 7.65563 7.71355 7.80916 7.96123 8.38917 8.51476 9.35002 9.95675 10.63232 11.53415 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002716 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.864933 B =10308.632871 C =11583.165589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.606 5.606 4 C 0.508 3.492 5 O -0.503 6.503 6 C -0.140 4.140 7 C 0.099 3.901 8 H 0.096 0.904 9 C -0.105 4.105 10 C -0.180 4.180 11 C -0.071 4.071 12 C -0.156 4.156 13 C -0.085 4.085 14 C -0.140 4.140 15 C 0.114 3.886 16 O -0.283 6.283 17 C 0.132 3.868 18 H 0.089 0.911 19 C -0.152 4.152 20 C 0.186 3.814 21 N -0.602 5.602 22 C -0.222 4.222 23 H 0.075 0.925 24 C -0.011 4.011 25 N -0.923 5.923 26 Si 0.912 3.088 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.124 3.876 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.041 0.959 48 H 0.251 0.749 49 H 0.049 0.951 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -14.508 21.496 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.340 5.340 4 C 0.295 3.705 5 O -0.377 6.377 6 C -0.179 4.179 7 C 0.042 3.958 8 H 0.114 0.886 9 C -0.142 4.142 10 C -0.181 4.181 11 C -0.089 4.089 12 C -0.174 4.174 13 C -0.103 4.103 14 C -0.159 4.159 15 C 0.068 3.932 16 O -0.197 6.197 17 C 0.029 3.971 18 H 0.107 0.893 19 C -0.191 4.191 20 C 0.061 3.939 21 N -0.328 5.328 22 C -0.351 4.351 23 H 0.093 0.907 24 C -0.207 4.207 25 N -0.571 5.571 26 Si 0.742 3.258 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.003 4.003 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.582 -13.623 21.098 26.233 hybrid contribution 0.648 0.196 -0.559 0.878 sum -6.934 -13.426 20.539 25.499 Atomic orbital electron populations 1.22240 0.96065 1.01874 1.02898 1.21553 0.94396 0.82936 1.02967 1.47991 1.66076 1.13710 1.06219 1.20269 0.78427 0.87063 0.84779 1.90797 1.43219 1.16956 1.86687 1.21929 1.04793 0.98869 0.92356 1.23079 0.93643 0.85612 0.93431 0.88577 1.21860 1.02416 0.97007 0.92944 1.20772 1.06533 0.96251 0.94526 1.20275 0.98121 0.97840 0.92685 1.20999 1.02398 0.94268 0.99766 1.20877 0.98314 0.98915 0.92172 1.20354 1.04576 0.95888 0.95097 1.19743 0.95666 0.93845 0.83929 1.87099 1.58973 1.52167 1.21417 1.22392 0.98086 0.93511 0.83129 0.89314 1.23212 0.97648 0.96453 1.01801 1.21029 0.82469 0.95054 0.95389 1.44306 1.05045 1.36050 1.47445 1.18996 0.87722 1.11966 1.16395 0.90672 1.24789 0.96771 0.98886 1.00224 1.69963 1.18880 1.28141 1.40120 0.86201 0.81412 0.78517 0.79649 1.21297 1.21662 1.21257 1.21924 0.92623 0.90521 0.95207 0.91896 0.92547 0.91772 0.90753 0.90227 0.88062 0.87115 0.89088 0.88898 0.85986 0.85677 0.85281 0.85305 0.92900 0.90862 0.93911 0.94063 0.93844 0.93315 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.11 1.00 5.93 -4.04 -0.02 0.98 16 3 N -0.61 -8.74 2.56 -163.67 -0.42 -9.16 16 4 C 0.51 7.86 6.88 -10.99 -0.08 7.78 16 5 O -0.50 -10.38 11.67 -2.00 -0.02 -10.40 16 6 C -0.14 -1.44 3.95 -27.89 -0.11 -1.55 16 7 C 0.10 1.17 3.05 -25.84 -0.08 1.09 16 8 H 0.10 1.26 7.97 -51.93 -0.41 0.85 16 9 C -0.11 -0.92 6.65 -26.52 -0.18 -1.09 16 10 C -0.18 -1.96 6.27 -104.10 -0.65 -2.61 16 11 C -0.07 -0.65 10.03 -39.72 -0.40 -1.05 16 12 C -0.16 -1.35 10.07 -39.52 -0.40 -1.75 16 13 C -0.08 -0.80 10.02 -39.68 -0.40 -1.20 16 14 C -0.14 -1.68 10.06 -39.31 -0.40 -2.08 16 15 C 0.11 1.52 7.04 -38.95 -0.27 1.25 16 16 O -0.28 -4.31 10.38 -28.54 -0.30 -4.61 16 17 C 0.13 2.45 3.55 -65.78 -0.23 2.22 16 18 H 0.09 1.54 7.86 -51.93 -0.41 1.13 16 19 C -0.15 -3.21 6.33 -24.90 -0.16 -3.36 16 20 C 0.19 4.92 5.37 -3.06 -0.02 4.90 16 21 N -0.60 -16.61 3.39 -170.07 -0.58 -17.19 16 22 C -0.22 -6.58 10.28 -15.06 -0.15 -6.74 16 23 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 24 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 25 N -0.92 -28.53 10.31 55.49 0.57 -27.96 16 26 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 C 0.12 2.83 6.58 -2.53 -0.02 2.82 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.51 7.22 -51.93 -0.38 0.14 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.51 6.44 -51.93 -0.33 0.17 16 35 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 36 H 0.10 0.91 7.19 -51.93 -0.37 0.54 16 37 H 0.11 0.77 7.40 -51.93 -0.38 0.38 16 38 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.66 6.25 -51.93 -0.32 1.33 16 46 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 47 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.05 1.20 5.53 -51.93 -0.29 0.92 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -36.69 392.65 -10.97 -47.66 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.85 Total: -0.40 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.28 Total: -1.95 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.42 Total: -54.32 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.32 Total: -15.01 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.69 -10.97 -47.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318469520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.083 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds