Wall clock time and date at job start Wed Apr 1 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 5 5 O 1.21279 * 119.99753 * 180.02562 * 4 3 2 6 6 C 1.50693 * 120.00154 * 0.02562 * 4 3 2 7 7 C 1.52997 * 109.47221 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.66688 * 305.69959 * 7 6 4 9 9 C 1.54706 * 110.75278 * 182.48382 * 7 6 4 10 10 C 1.51644 * 101.93090 * 216.39281 * 9 7 6 11 11 C 1.37740 * 132.17069 * 195.40441 * 10 9 7 12 12 C 1.38353 * 119.97464 * 179.63850 * 11 10 9 13 13 C 1.38292 * 119.76428 * 0.02562 * 12 11 10 14 14 C 1.37919 * 120.35448 * 0.16560 * 13 12 11 15 15 C 1.38878 * 107.04014 * 15.38218 * 10 9 7 16 16 O 1.36386 * 111.32074 * 0.91756 * 15 10 9 17 17 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 18 18 H 1.09005 * 110.88485 * 356.12157 * 17 3 2 19 19 C 1.55162 * 111.00070 * 119.99657 * 17 3 2 20 20 C 1.54321 * 102.93997 * 153.57827 * 19 17 3 21 21 N 1.47027 * 107.27262 * 337.80475 * 20 19 17 22 22 C 1.36937 * 125.65178 * 178.98249 * 21 20 19 23 23 H 1.07994 * 120.00233 * 179.97438 * 22 21 20 24 24 C 1.38818 * 119.99819 * 359.97438 * 22 21 20 25 25 N 1.31616 * 120.00002 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99981 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46996 * 59.99681 * 26 24 22 28 28 H 1.48497 * 109.47157 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46942 * 299.99741 * 26 24 22 30 30 C 1.47429 * 108.70231 * 358.94519 * 21 20 19 31 31 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 36 36 H 1.09001 * 109.47525 * 300.00358 * 6 4 3 37 37 H 1.09002 * 109.47555 * 59.99795 * 6 4 3 38 38 H 1.09000 * 110.93712 * 334.55255 * 9 7 6 39 39 H 1.08998 * 110.94095 * 98.23149 * 9 7 6 40 40 H 1.07997 * 120.01707 * 359.66168 * 11 10 9 41 41 H 1.07999 * 120.11781 * 179.97438 * 12 11 10 42 42 H 1.07998 * 119.82058 * 180.14740 * 13 12 11 43 43 H 1.08001 * 119.88352 * 179.97438 * 14 13 12 44 44 H 1.08997 * 110.71870 * 271.94118 * 19 17 3 45 45 H 1.09001 * 110.72037 * 35.21876 * 19 17 3 46 46 H 1.08993 * 109.88675 * 97.22391 * 20 19 17 47 47 H 1.08998 * 109.88479 * 218.23446 * 20 19 17 48 48 H 0.96993 * 120.00113 * 180.02562 * 25 24 22 49 49 H 1.09000 * 110.36382 * 265.28672 * 30 21 20 50 50 H 1.08999 * 110.36703 * 142.96397 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6469 3.1600 1.1673 6 6 1.9924 1.3059 2.4723 7 6 2.3231 2.2435 3.6352 8 1 3.3378 2.6303 3.5409 9 6 2.1353 1.5225 4.9911 10 6 1.5892 2.6352 5.8648 11 6 1.4616 2.7604 7.2305 12 6 0.9228 3.9141 7.7716 13 6 0.5136 4.9378 6.9366 14 6 0.6368 4.8128 5.5686 15 6 1.1760 3.6536 5.0158 16 8 1.3725 3.3196 3.7082 17 6 2.2626 2.0718 -1.2687 18 1 2.0990 1.4024 -2.1133 19 6 1.3816 3.3435 -1.3882 20 6 2.2023 4.2447 -2.3346 21 7 3.5997 3.7927 -2.2652 22 6 4.6457 4.3216 -2.9732 23 1 5.6397 3.9175 -2.8509 24 6 4.4284 5.3771 -3.8482 25 7 3.2169 5.8693 -3.9976 26 14 5.8553 6.0990 -4.8136 27 1 6.4597 5.0444 -5.6667 28 1 5.3628 7.2068 -5.6711 29 1 6.8779 6.6193 -3.8707 30 6 3.6883 2.6764 -1.3063 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 0.9446 1.0113 2.5303 37 1 2.6228 0.4186 2.5299 38 1 1.4163 0.7080 4.9028 39 1 3.0887 1.1586 5.3742 40 1 1.7824 1.9585 7.8789 41 1 0.8213 4.0146 8.8421 42 1 0.0950 5.8397 7.3581 43 1 0.3144 5.6169 4.9237 44 1 0.4140 3.1023 -1.8281 45 1 1.2566 3.8188 -0.4152 46 1 1.8311 4.1464 -3.3546 47 1 2.1299 5.2836 -2.0126 48 1 3.0649 6.6066 -4.6093 49 1 3.9702 3.0450 -0.3200 50 1 4.4063 1.9337 -1.6541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318469520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:05 Heat of formation + Delta-G solvation = -24.448650 kcal Electronic energy + Delta-G solvation = -30726.387713 eV Core-core repulsion = 26719.218150 eV Total energy + Delta-G solvation = -4007.169564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.19464 -41.19964 -38.72391 -38.15427 -36.73854 -34.54529 -33.97974 -32.29877 -31.55090 -30.92978 -30.73868 -29.09282 -27.78603 -26.36093 -24.41579 -23.53782 -23.05835 -22.55976 -22.16075 -21.96292 -19.81413 -18.94972 -18.48680 -18.03696 -17.70891 -17.19777 -16.84287 -16.63155 -16.14719 -16.04782 -15.77845 -15.13118 -15.04296 -14.71028 -14.49199 -14.45942 -14.25177 -14.16447 -14.02017 -13.87850 -13.66279 -13.44556 -13.32162 -13.06822 -12.83138 -12.74879 -12.66416 -12.62304 -12.45341 -12.18549 -12.09266 -12.06803 -12.01359 -11.82102 -11.78475 -11.65709 -11.48355 -10.73312 -10.42632 -9.83049 -9.59969 -9.08017 -8.86950 -7.86343 -5.22732 0.35466 0.42932 1.41357 1.47013 1.53071 1.73769 1.98542 2.33750 2.48960 2.79053 3.29980 3.38363 3.41238 3.69966 3.73470 3.86506 3.92443 4.02370 4.03030 4.12188 4.19001 4.21308 4.26308 4.38668 4.44574 4.50519 4.55498 4.59519 4.60812 4.68868 4.70659 4.71341 4.89288 4.89662 4.95734 4.97872 5.00902 5.03797 5.14851 5.21087 5.39178 5.40901 5.44807 5.48477 5.56009 5.61268 5.67569 5.77630 5.79779 6.16412 6.29284 6.56137 7.06546 7.35013 7.74385 8.40910 9.24267 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002716 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.864933 B =10308.632871 C =11583.165589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.498 3.502 5 O -0.567 6.567 6 C -0.124 4.124 7 C 0.088 3.912 8 H 0.068 0.932 9 C -0.090 4.090 10 C -0.185 4.185 11 C -0.072 4.072 12 C -0.151 4.151 13 C -0.089 4.089 14 C -0.169 4.169 15 C 0.071 3.929 16 O -0.324 6.324 17 C 0.154 3.846 18 H 0.110 0.890 19 C -0.136 4.136 20 C 0.197 3.803 21 N -0.623 5.623 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.954 5.954 26 Si 0.985 3.015 27 H -0.270 1.270 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.121 3.879 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.157 0.843 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.018 0.982 47 H -0.010 1.010 48 H 0.247 0.753 49 H 0.030 0.970 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 -18.493 23.799 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.288 3.712 5 O -0.445 6.445 6 C -0.163 4.163 7 C 0.032 3.968 8 H 0.086 0.914 9 C -0.127 4.127 10 C -0.186 4.186 11 C -0.090 4.090 12 C -0.169 4.169 13 C -0.107 4.107 14 C -0.188 4.188 15 C 0.025 3.975 16 O -0.238 6.238 17 C 0.049 3.951 18 H 0.128 0.872 19 C -0.175 4.175 20 C 0.071 3.929 21 N -0.350 5.350 22 C -0.373 4.373 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.603 5.603 26 Si 0.812 3.188 27 H -0.195 1.195 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.005 4.005 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.175 0.825 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.008 0.992 48 H 0.056 0.944 49 H 0.047 0.953 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.473 -17.689 23.433 30.296 hybrid contribution 0.602 1.482 -1.178 1.987 sum -6.872 -16.207 22.255 28.375 Atomic orbital electron populations 1.22214 0.95342 1.03460 1.01709 1.21984 0.94919 0.79901 1.05573 1.48067 1.65652 1.15496 1.04266 1.21280 0.76847 0.86544 0.86545 1.90783 1.46036 1.20025 1.87677 1.21991 1.07007 0.99104 0.88222 1.23216 0.91914 0.85596 0.96071 0.91413 1.21872 1.04235 0.96482 0.90096 1.21133 1.06022 0.96185 0.95224 1.20714 0.97211 0.98807 0.92278 1.21456 1.00655 0.93498 1.01256 1.21186 0.98078 1.00307 0.91105 1.20573 1.05929 0.95834 0.96446 1.20137 0.97886 0.95453 0.83976 1.87050 1.59988 1.53819 1.22993 1.21974 0.94000 0.92927 0.86211 0.87173 1.22966 0.98387 0.96819 0.99352 1.20721 0.83389 0.93677 0.95065 1.44634 1.04948 1.37476 1.47921 1.19442 0.88694 1.12501 1.16696 0.90087 1.25761 0.99678 0.99356 1.01539 1.70213 1.21089 1.28384 1.40654 0.85059 0.77954 0.77705 0.78045 1.19510 1.21803 1.20663 1.22017 0.95929 0.89521 0.93012 0.93975 0.92932 0.88733 0.86836 0.88995 0.85844 0.82536 0.86341 0.86474 0.82721 0.82463 0.83105 0.86776 0.90356 0.92828 0.96372 0.99186 0.94389 0.95259 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 71.98 0.74 -1.62 16 2 C 0.10 1.45 5.93 86.38 0.51 1.97 16 3 N -0.60 -16.41 2.56 -790.13 -2.02 -18.43 16 4 C 0.50 15.25 6.88 87.65 0.60 15.85 16 5 O -0.57 -24.81 11.67 4.21 0.05 -24.76 16 6 C -0.12 -2.27 3.95 29.84 0.12 -2.15 16 7 C 0.09 2.06 3.05 31.17 0.09 2.15 16 8 H 0.07 1.88 7.97 -2.39 -0.02 1.87 16 9 C -0.09 -1.32 6.65 30.73 0.20 -1.11 16 10 C -0.18 -3.74 6.27 -19.53 -0.12 -3.86 16 11 C -0.07 -1.11 10.03 22.18 0.22 -0.88 16 12 C -0.15 -2.23 10.07 22.31 0.22 -2.00 16 13 C -0.09 -1.64 10.02 22.21 0.22 -1.42 16 14 C -0.17 -4.35 10.06 22.45 0.23 -4.12 16 15 C 0.07 1.96 7.04 22.68 0.16 2.12 16 16 O -0.32 -10.46 10.38 -90.75 -0.94 -11.40 16 17 C 0.15 5.67 3.55 46.38 0.16 5.84 16 18 H 0.11 3.62 7.86 -2.38 -0.02 3.61 16 19 C -0.14 -5.97 6.33 31.78 0.20 -5.77 16 20 C 0.20 11.13 5.37 86.73 0.47 11.60 16 21 N -0.62 -36.01 3.39 -691.99 -2.35 -38.36 16 22 C -0.24 -14.99 10.28 84.03 0.86 -14.12 16 23 H 0.08 4.72 7.83 -2.91 -0.02 4.70 16 24 C -0.07 -4.35 5.49 84.86 0.47 -3.88 16 25 N -0.95 -61.94 10.31 21.65 0.22 -61.72 16 26 Si 0.99 48.75 29.55 68.60 2.03 50.78 16 27 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 28 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 29 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 30 C 0.12 5.68 6.58 86.85 0.57 6.25 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.78 7.22 -2.39 -0.02 0.77 16 33 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.11 0.87 6.44 -2.39 -0.02 0.86 16 35 H 0.09 1.22 7.93 -2.39 -0.02 1.20 16 36 H 0.12 1.76 7.19 -2.39 -0.02 1.75 16 37 H 0.16 1.37 7.40 -2.39 -0.02 1.36 16 38 H 0.12 1.09 7.92 -2.39 -0.02 1.07 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.12 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.11 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.05 2.58 6.25 -2.39 -0.01 2.56 16 46 H 0.02 1.09 7.38 -2.39 -0.02 1.08 16 47 H -0.01 -0.66 7.50 -2.39 -0.02 -0.68 16 48 H 0.25 15.49 8.31 -92.71 -0.77 14.71 16 49 H 0.03 1.52 5.53 -2.39 -0.01 1.51 16 50 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -90.05 392.65 3.85 -86.20 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.93 Total: 12.86 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.93 Total: 4.84 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -4.15 Total: -118.50 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.89 Total: -36.17 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -90.05 3.85 -86.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318469520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.751 kcal (2) G-P(sol) polarization free energy of solvation -90.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds