Wall clock time and date at job start Wed Apr 1 2020 03:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.47001 * 2 1 4 4 C 1.42898 * 113.99637 * 182.45864 * 3 2 1 5 5 H 1.09002 * 109.47750 * 343.50607 * 4 3 2 6 6 C 1.50703 * 109.47360 * 223.49954 * 4 3 2 7 7 O 1.21276 * 119.99716 * 0.02562 * 6 4 3 8 8 N 1.34773 * 120.00331 * 180.02562 * 6 4 3 9 9 C 1.46499 * 119.99944 * 180.02562 * 8 6 4 10 10 C 1.50700 * 109.46772 * 180.02562 * 9 8 6 11 11 C 1.38264 * 120.01434 * 269.71927 * 10 9 8 12 12 C 1.38147 * 119.96057 * 179.79229 * 11 10 9 13 13 C 1.38445 * 120.10168 * 0.44624 * 12 11 10 14 14 C 1.38073 * 119.93604 * 359.80789 * 13 12 11 15 15 C 1.38145 * 120.02489 * 90.00045 * 10 9 8 16 16 C 1.50777 * 108.86405 * 180.02562 * 14 13 12 17 17 N 1.46642 * 107.70115 * 359.97438 * 16 14 13 18 18 C 1.36931 * 126.55977 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00470 * 354.38341 * 18 17 16 20 20 C 1.38817 * 119.99835 * 174.38205 * 18 17 16 21 21 N 1.31618 * 119.99694 * 7.03085 * 20 18 17 22 22 Si 1.86802 * 120.00159 * 187.03234 * 20 18 17 23 23 H 1.48497 * 109.46973 * 94.98599 * 22 20 18 24 24 H 1.48501 * 109.47119 * 214.98186 * 22 20 18 25 25 H 1.48499 * 109.47023 * 334.98471 * 22 20 18 26 26 C 1.46634 * 106.87433 * 0.02562 * 17 16 14 27 27 C 1.53001 * 109.46846 * 103.50714 * 4 3 2 28 28 C 1.53002 * 117.49857 * 8.06736 * 27 4 3 29 29 C 1.53007 * 117.49733 * 299.40915 * 27 4 3 30 30 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47175 * 300.00184 * 1 2 3 32 32 H 1.09004 * 109.47101 * 59.99903 * 1 2 3 33 33 H 1.08999 * 109.47050 * 240.00578 * 2 1 3 34 34 H 1.08994 * 109.47198 * 120.00176 * 2 1 3 35 35 H 0.96997 * 119.99753 * 0.02562 * 8 6 4 36 36 H 1.08992 * 109.46869 * 299.99633 * 9 8 6 37 37 H 1.08989 * 109.47125 * 60.00264 * 9 8 6 38 38 H 1.07996 * 120.02134 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.95205 * 180.23238 * 12 11 10 40 40 H 1.07994 * 119.94533 * 359.96787 * 15 10 9 41 41 H 1.08995 * 109.81363 * 119.54537 * 16 14 13 42 42 H 1.09001 * 109.81102 * 240.45217 * 16 14 13 43 43 H 0.97009 * 119.99813 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.81205 * 119.54516 * 26 17 16 45 45 H 1.08998 * 109.81363 * 240.38673 * 26 17 16 46 46 H 1.08997 * 115.55356 * 153.74342 * 27 4 3 47 47 H 1.08995 * 117.49808 * 0.02562 * 28 27 4 48 48 H 1.09006 * 117.49775 * 145.01986 * 28 27 4 49 49 H 1.09001 * 117.49964 * 214.98054 * 29 27 4 50 50 H 1.08994 * 117.49671 * 359.97438 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4297 1.4605 -0.0560 5 1 3.8809 0.5030 0.2041 6 6 3.8887 2.5136 0.9194 7 8 3.0769 3.1083 1.5962 8 7 5.2013 2.7946 1.0396 9 6 5.6475 3.8179 1.9882 10 6 7.1485 3.9382 1.9281 11 6 7.9382 3.1632 2.7573 12 6 9.3142 3.2713 2.6982 13 6 9.9036 4.1612 1.8165 14 6 9.1148 4.9389 0.9923 15 6 7.7361 4.8270 1.0488 16 6 10.0067 5.8085 0.1428 17 7 11.3961 5.5099 0.5044 18 6 12.5192 6.0815 -0.0312 19 1 12.4330 6.7659 -0.8623 20 6 13.7686 5.7815 0.4941 21 7 13.8891 4.8460 1.4121 22 14 15.2788 6.7054 -0.1019 23 1 15.5583 7.8402 0.8142 24 1 16.4453 5.7866 -0.1218 25 1 15.0334 7.2237 -1.4717 26 6 11.3525 4.4820 1.5492 27 6 3.8544 1.8568 -1.4714 28 6 2.7500 2.2339 -2.4609 29 6 3.4910 0.9029 -2.6112 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.8506 2.3192 0.4980 36 1 5.1960 4.7754 1.7287 37 1 5.3454 3.5351 2.9965 38 1 7.4797 2.4711 3.4480 39 1 9.9309 2.6631 3.3433 40 1 7.1189 5.4351 0.4042 41 1 9.8432 5.5866 -0.9118 42 1 9.7923 6.8593 0.3377 43 1 14.7622 4.6366 1.7794 44 1 11.8726 3.5867 1.2086 45 1 11.8219 4.8587 2.4579 46 1 4.8010 2.3921 -1.5458 47 1 1.7209 2.2001 -2.1034 48 1 2.9701 3.0171 -3.1864 49 1 4.1983 0.8109 -3.4355 50 1 2.9497 -0.0071 -2.3525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327684354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:23 Heat of formation + Delta-G solvation = 0.520830 kcal Electronic energy + Delta-G solvation = -29241.782909 eV Core-core repulsion = 25235.696104 eV Total energy + Delta-G solvation = -4006.086806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.47633 -39.67248 -38.43503 -36.45320 -36.27370 -34.50557 -32.33819 -31.84685 -31.23102 -29.91028 -28.64473 -27.05116 -25.92574 -24.34720 -23.46914 -22.45411 -22.08605 -21.76990 -20.47201 -20.41239 -20.12318 -17.93549 -17.15947 -17.04813 -16.70459 -15.85136 -15.55204 -15.42828 -15.11537 -14.89492 -14.56990 -14.38120 -14.25261 -14.22278 -13.80093 -13.30718 -13.10163 -13.04866 -12.98358 -12.60853 -12.37964 -11.99063 -11.94881 -11.86992 -11.70995 -11.68210 -11.59388 -11.57561 -11.12053 -10.96100 -10.86926 -10.62780 -10.51472 -10.25588 -10.19342 -10.16664 -9.84808 -9.59785 -9.21092 -8.95545 -8.45497 -8.05549 -6.89061 -5.86711 -3.18903 1.52522 1.70817 2.39380 2.74228 3.34956 3.40087 3.42151 3.45329 3.58646 4.08894 4.24493 4.37587 4.39394 4.48657 4.67089 4.67793 4.74562 4.77444 4.87548 4.93050 4.96189 5.08747 5.22022 5.26692 5.28496 5.36604 5.37971 5.48367 5.52400 5.54498 5.58128 5.65275 5.72686 5.77196 5.82349 5.91758 5.98908 6.07710 6.23623 6.46188 6.50106 6.52328 6.69828 6.73537 6.75631 7.01456 7.27749 7.30258 7.36223 7.49580 7.65326 8.06221 8.09225 9.07061 9.67217 10.34608 11.27728 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.001920 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.680872 B =14582.516138 C =15237.393935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.105 3.895 5 H 0.092 0.908 6 C 0.513 3.487 7 O -0.522 6.522 8 N -0.722 5.722 9 C 0.171 3.829 10 C -0.132 4.132 11 C -0.103 4.103 12 C -0.112 4.112 13 C -0.080 4.080 14 C -0.106 4.106 15 C -0.083 4.083 16 C 0.175 3.825 17 N -0.600 5.600 18 C -0.228 4.228 19 H 0.084 0.916 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.917 3.083 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.204 3.796 27 C -0.181 4.181 28 C -0.158 4.158 29 C -0.176 4.176 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.403 0.597 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.255 0.745 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.118 0.882 47 H 0.107 0.893 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.514 -11.428 -3.290 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.269 6.269 4 C 0.044 3.956 5 H 0.110 0.890 6 C 0.298 3.702 7 O -0.397 6.397 8 N -0.375 5.375 9 C 0.049 3.951 10 C -0.132 4.132 11 C -0.122 4.122 12 C -0.131 4.131 13 C -0.081 4.081 14 C -0.107 4.107 15 C -0.102 4.102 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.355 4.355 19 H 0.102 0.898 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.746 3.254 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.080 3.920 27 C -0.199 4.199 28 C -0.195 4.195 29 C -0.212 4.212 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.136 0.864 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.007 -10.823 -2.761 25.575 hybrid contribution 1.455 -0.035 -0.469 1.529 sum -21.551 -10.858 -3.230 24.347 Atomic orbital electron populations 1.21726 0.93323 1.02272 1.03437 1.22715 0.96097 0.83614 1.00135 1.88048 1.18182 1.26251 1.94418 1.21309 0.83660 0.98016 0.92661 0.89023 1.20437 0.82440 0.83988 0.83385 1.90719 1.53038 1.50851 1.45110 1.46121 1.07137 1.41199 1.43084 1.20102 0.90248 0.91654 0.93106 1.19458 0.93782 1.00136 0.99864 1.20825 0.93288 0.99094 0.98982 1.20501 0.94120 0.99179 0.99270 1.21547 0.99267 0.93656 0.93662 1.20729 0.93199 0.98400 0.98372 1.20304 0.93136 0.98391 0.98400 1.19708 0.84645 0.95413 0.95258 1.43952 0.99657 1.45057 1.44022 1.18983 0.82967 1.21298 1.12274 0.89823 1.24859 0.97725 0.98908 0.98739 1.69938 1.23160 1.32129 1.31522 0.86027 0.82207 0.79020 0.78095 1.21432 1.21639 1.20473 1.19754 0.85639 0.93127 0.93484 1.22723 1.01303 1.06088 0.89832 1.22931 0.98009 0.97973 1.00587 1.23050 1.03891 0.94418 0.99886 0.91015 0.91553 0.91776 0.93060 0.93174 0.76261 0.90763 0.90801 0.86328 0.86115 0.86524 0.94669 0.94499 0.93446 0.92044 0.91564 0.86383 0.87491 0.88688 0.88308 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.05 0.37 6.35 37.16 0.24 0.60 16 3 O -0.35 -3.67 7.87 -55.14 -0.43 -4.10 16 4 C 0.11 0.97 2.97 -27.88 -0.08 0.89 16 5 H 0.09 0.65 7.68 -51.93 -0.40 0.25 16 6 C 0.51 6.14 7.23 -10.99 -0.08 6.06 16 7 O -0.52 -8.48 16.50 -14.35 -0.24 -8.71 16 8 N -0.72 -7.46 5.32 -61.48 -0.33 -7.79 16 9 C 0.17 1.98 5.80 -5.19 -0.03 1.95 16 10 C -0.13 -1.73 5.25 -104.65 -0.55 -2.27 16 11 C -0.10 -1.38 9.70 -39.61 -0.38 -1.77 16 12 C -0.11 -1.80 10.05 -39.54 -0.40 -2.19 16 13 C -0.08 -1.56 6.22 -104.56 -0.65 -2.21 16 14 C -0.11 -1.96 6.22 -104.57 -0.65 -2.62 16 15 C -0.08 -1.24 9.70 -39.54 -0.38 -1.62 16 16 C 0.18 3.68 7.25 -5.08 -0.04 3.65 16 17 N -0.60 -15.31 3.41 -175.67 -0.60 -15.91 16 18 C -0.23 -6.23 10.31 -15.06 -0.16 -6.39 16 19 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 20 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 21 N -0.92 -26.31 10.49 55.49 0.58 -25.73 16 22 Si 0.92 21.55 29.56 -169.99 -5.02 16.52 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.20 4.92 5.40 -5.08 -0.03 4.89 16 27 C -0.18 -1.47 5.60 -90.61 -0.51 -1.98 16 28 C -0.16 -1.28 9.88 -26.69 -0.26 -1.55 16 29 C -0.18 -1.18 10.16 -26.69 -0.27 -1.45 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.29 6.16 -51.93 -0.32 -0.03 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 3.48 8.08 -40.82 -0.33 3.15 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.07 0.86 8.08 -51.94 -0.42 0.44 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 1.61 7.62 -51.93 -0.40 1.22 16 45 H 0.07 1.76 7.38 -51.93 -0.38 1.37 16 46 H 0.12 0.92 7.63 -51.93 -0.40 0.53 16 47 H 0.11 0.96 7.06 -51.93 -0.37 0.60 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.56 6.16 -51.93 -0.32 0.24 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -32.41 407.69 -11.79 -44.20 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.95 Total: 2.18 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.95 Total: -6.80 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.34 Total: -49.42 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.67 Total: -12.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.41 -11.79 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327684354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.717 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds