Wall clock time and date at job start Wed Apr 1 2020 03:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.47001 * 2 1 4 4 C 1.42898 * 113.99637 * 182.45864 * 3 2 1 5 5 H 1.09002 * 109.47750 * 343.50607 * 4 3 2 6 6 C 1.50703 * 109.47360 * 223.49954 * 4 3 2 7 7 O 1.21276 * 119.99716 * 0.02562 * 6 4 3 8 8 N 1.34773 * 120.00331 * 180.02562 * 6 4 3 9 9 C 1.46499 * 119.99944 * 180.02562 * 8 6 4 10 10 C 1.50700 * 109.46772 * 180.02562 * 9 8 6 11 11 C 1.38264 * 120.01434 * 269.71927 * 10 9 8 12 12 C 1.38147 * 119.96057 * 179.79229 * 11 10 9 13 13 C 1.38445 * 120.10168 * 0.44624 * 12 11 10 14 14 C 1.38073 * 119.93604 * 359.80789 * 13 12 11 15 15 C 1.38145 * 120.02489 * 90.00045 * 10 9 8 16 16 C 1.50777 * 108.86405 * 180.02562 * 14 13 12 17 17 N 1.46642 * 107.70115 * 359.97438 * 16 14 13 18 18 C 1.36931 * 126.55977 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00470 * 354.38341 * 18 17 16 20 20 C 1.38817 * 119.99835 * 174.38205 * 18 17 16 21 21 N 1.31618 * 119.99694 * 7.03085 * 20 18 17 22 22 Si 1.86802 * 120.00159 * 187.03234 * 20 18 17 23 23 H 1.48497 * 109.46973 * 94.98599 * 22 20 18 24 24 H 1.48501 * 109.47119 * 214.98186 * 22 20 18 25 25 H 1.48499 * 109.47023 * 334.98471 * 22 20 18 26 26 C 1.46634 * 106.87433 * 0.02562 * 17 16 14 27 27 C 1.53001 * 109.46846 * 103.50714 * 4 3 2 28 28 C 1.53002 * 117.49857 * 8.06736 * 27 4 3 29 29 C 1.53007 * 117.49733 * 299.40915 * 27 4 3 30 30 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47175 * 300.00184 * 1 2 3 32 32 H 1.09004 * 109.47101 * 59.99903 * 1 2 3 33 33 H 1.08999 * 109.47050 * 240.00578 * 2 1 3 34 34 H 1.08994 * 109.47198 * 120.00176 * 2 1 3 35 35 H 0.96997 * 119.99753 * 0.02562 * 8 6 4 36 36 H 1.08992 * 109.46869 * 299.99633 * 9 8 6 37 37 H 1.08989 * 109.47125 * 60.00264 * 9 8 6 38 38 H 1.07996 * 120.02134 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.95205 * 180.23238 * 12 11 10 40 40 H 1.07994 * 119.94533 * 359.96787 * 15 10 9 41 41 H 1.08995 * 109.81363 * 119.54537 * 16 14 13 42 42 H 1.09001 * 109.81102 * 240.45217 * 16 14 13 43 43 H 0.97009 * 119.99813 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.81205 * 119.54516 * 26 17 16 45 45 H 1.08998 * 109.81363 * 240.38673 * 26 17 16 46 46 H 1.08997 * 115.55356 * 153.74342 * 27 4 3 47 47 H 1.08995 * 117.49808 * 0.02562 * 28 27 4 48 48 H 1.09006 * 117.49775 * 145.01986 * 28 27 4 49 49 H 1.09001 * 117.49964 * 214.98054 * 29 27 4 50 50 H 1.08994 * 117.49671 * 359.97438 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4297 1.4605 -0.0560 5 1 3.8809 0.5030 0.2041 6 6 3.8887 2.5136 0.9194 7 8 3.0769 3.1083 1.5962 8 7 5.2013 2.7946 1.0396 9 6 5.6475 3.8179 1.9882 10 6 7.1485 3.9382 1.9281 11 6 7.9382 3.1632 2.7573 12 6 9.3142 3.2713 2.6982 13 6 9.9036 4.1612 1.8165 14 6 9.1148 4.9389 0.9923 15 6 7.7361 4.8270 1.0488 16 6 10.0067 5.8085 0.1428 17 7 11.3961 5.5099 0.5044 18 6 12.5192 6.0815 -0.0312 19 1 12.4330 6.7659 -0.8623 20 6 13.7686 5.7815 0.4941 21 7 13.8891 4.8460 1.4121 22 14 15.2788 6.7054 -0.1019 23 1 15.5583 7.8402 0.8142 24 1 16.4453 5.7866 -0.1218 25 1 15.0334 7.2237 -1.4717 26 6 11.3525 4.4820 1.5492 27 6 3.8544 1.8568 -1.4714 28 6 2.7500 2.2339 -2.4609 29 6 3.4910 0.9029 -2.6112 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.8506 2.3192 0.4980 36 1 5.1960 4.7754 1.7287 37 1 5.3454 3.5351 2.9965 38 1 7.4797 2.4711 3.4480 39 1 9.9309 2.6631 3.3433 40 1 7.1189 5.4351 0.4042 41 1 9.8432 5.5866 -0.9118 42 1 9.7923 6.8593 0.3377 43 1 14.7622 4.6366 1.7794 44 1 11.8726 3.5867 1.2086 45 1 11.8219 4.8587 2.4579 46 1 4.8010 2.3921 -1.5458 47 1 1.7209 2.2001 -2.1034 48 1 2.9701 3.0171 -3.1864 49 1 4.1983 0.8109 -3.4355 50 1 2.9497 -0.0071 -2.3525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327684354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:22 Heat of formation + Delta-G solvation = -17.568914 kcal Electronic energy + Delta-G solvation = -29242.567340 eV Core-core repulsion = 25235.696104 eV Total energy + Delta-G solvation = -4006.871236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40042 -40.93396 -39.26698 -37.83987 -36.97164 -35.71188 -34.11031 -32.67391 -32.27506 -31.45825 -29.73189 -28.37924 -27.57171 -25.71196 -24.00235 -23.60286 -22.98849 -22.52974 -22.10619 -21.44730 -21.15705 -19.00211 -18.74767 -17.88061 -17.41402 -17.19513 -16.68451 -16.44982 -16.26284 -16.06466 -15.91188 -15.65238 -15.50204 -15.28829 -14.86491 -14.60991 -14.50442 -13.78726 -13.65484 -13.51583 -13.47383 -13.36651 -13.30355 -13.10067 -13.06432 -13.02661 -12.71840 -12.47851 -12.29080 -12.13182 -12.08651 -11.99622 -11.83733 -11.68472 -11.62114 -11.23665 -10.92405 -10.82089 -10.36891 -10.13869 -9.72220 -9.57734 -8.84861 -7.95373 -5.30936 0.25985 0.45086 1.45649 1.48270 1.51895 1.57213 1.92602 2.44129 2.70229 2.90838 2.99684 3.26985 3.45884 3.53830 3.59614 3.71715 3.81252 3.90696 3.96982 4.13051 4.16315 4.17980 4.20110 4.29545 4.33751 4.44553 4.50266 4.51818 4.65449 4.72843 4.78302 4.81053 4.83829 4.86488 4.97180 4.99919 5.05221 5.17698 5.21050 5.27361 5.28280 5.32862 5.33222 5.34763 5.44887 5.52131 5.56660 5.86215 6.04092 6.09297 6.10096 6.53040 6.99721 7.19352 7.64736 8.33041 9.18216 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.001920 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.680872 B =14582.516138 C =15237.393935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.377 6.377 4 C 0.108 3.892 5 H 0.117 0.883 6 C 0.512 3.488 7 O -0.570 6.570 8 N -0.710 5.710 9 C 0.176 3.824 10 C -0.108 4.108 11 C -0.087 4.087 12 C -0.110 4.110 13 C -0.111 4.111 14 C -0.117 4.117 15 C -0.075 4.075 16 C 0.171 3.829 17 N -0.624 5.624 18 C -0.246 4.246 19 H 0.090 0.910 20 C -0.063 4.063 21 N -0.950 5.950 22 Si 0.986 3.014 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.264 1.264 26 C 0.220 3.780 27 C -0.187 4.187 28 C -0.172 4.172 29 C -0.157 4.157 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.251 0.749 44 H 0.023 0.977 45 H 0.025 0.975 46 H 0.122 0.878 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.412 -12.600 -3.958 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.296 6.296 4 C 0.047 3.953 5 H 0.135 0.865 6 C 0.299 3.701 7 O -0.448 6.448 8 N -0.363 5.363 9 C 0.053 3.947 10 C -0.108 4.108 11 C -0.105 4.105 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.094 4.094 16 C 0.047 3.953 17 N -0.351 5.351 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.813 3.187 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.189 1.189 26 C 0.095 3.905 27 C -0.205 4.205 28 C -0.209 4.209 29 C -0.194 4.194 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.043 0.957 46 H 0.140 0.860 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.127 0.873 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.914 -12.004 -3.460 27.871 hybrid contribution 1.897 0.295 -0.251 1.936 sum -23.017 -11.710 -3.711 26.090 Atomic orbital electron populations 1.21751 0.92988 1.03409 1.02520 1.22920 0.96478 0.82516 1.01246 1.88031 1.18805 1.28202 1.94526 1.21352 0.83527 0.98052 0.92400 0.86548 1.20961 0.82209 0.83880 0.83058 1.90701 1.54251 1.52750 1.47111 1.45975 1.07079 1.40635 1.42648 1.20022 0.88620 0.92144 0.93903 1.19605 0.94624 0.98404 0.98170 1.21158 0.91855 0.98790 0.98715 1.20686 0.95554 0.98253 0.98370 1.21188 0.96510 0.96743 0.96724 1.20564 0.94381 0.98415 0.98360 1.20485 0.91500 0.98647 0.98757 1.19804 0.83171 0.96188 0.96184 1.44250 1.01167 1.45381 1.44253 1.19397 0.84087 1.21319 1.12579 0.89208 1.25766 1.00725 0.99836 0.99280 1.70163 1.23343 1.33480 1.32814 0.84957 0.78154 0.77417 0.78170 1.21299 1.21868 1.18890 1.19295 0.88626 0.91171 0.91418 1.22728 1.01247 1.07084 0.89476 1.22929 0.97540 0.99370 1.01044 1.23118 1.03169 0.93966 0.99134 0.88845 0.93061 0.92088 0.91209 0.92653 0.74923 0.90885 0.90025 0.82707 0.85084 0.84299 0.93942 0.94219 0.93986 0.95920 0.95681 0.86019 0.88708 0.88508 0.87250 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.04 0.55 6.35 71.98 0.46 1.00 16 3 O -0.38 -7.29 7.87 -129.94 -1.02 -8.32 16 4 C 0.11 1.74 2.97 29.85 0.09 1.82 16 5 H 0.12 1.25 7.68 -2.39 -0.02 1.23 16 6 C 0.51 11.13 7.23 87.66 0.63 11.76 16 7 O -0.57 -17.76 16.50 16.02 0.26 -17.49 16 8 N -0.71 -12.37 5.32 -466.82 -2.48 -14.85 16 9 C 0.18 3.45 5.80 85.63 0.50 3.95 16 10 C -0.11 -2.44 5.25 -19.88 -0.10 -2.54 16 11 C -0.09 -2.02 9.70 22.25 0.22 -1.80 16 12 C -0.11 -3.38 10.05 22.30 0.22 -3.15 16 13 C -0.11 -4.38 6.22 -19.83 -0.12 -4.50 16 14 C -0.12 -4.24 6.22 -19.83 -0.12 -4.36 16 15 C -0.08 -2.04 9.70 22.30 0.22 -1.82 16 16 C 0.17 7.30 7.25 85.63 0.62 7.92 16 17 N -0.62 -33.16 3.41 -709.69 -2.42 -35.58 16 18 C -0.25 -13.88 10.31 84.04 0.87 -13.01 16 19 H 0.09 4.79 7.84 -2.91 -0.02 4.76 16 20 C -0.06 -3.56 5.48 84.86 0.47 -3.09 16 21 N -0.95 -56.98 10.49 21.65 0.23 -56.76 16 22 Si 0.99 45.27 29.56 68.60 2.03 47.30 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.22 11.26 5.40 85.63 0.46 11.72 16 27 C -0.19 -2.57 5.60 -10.79 -0.06 -2.63 16 28 C -0.17 -2.51 9.88 30.62 0.30 -2.21 16 29 C -0.16 -1.66 10.16 30.62 0.31 -1.35 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.58 6.16 -2.39 -0.01 0.57 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.41 5.58 8.08 -92.71 -0.75 4.83 16 36 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 38 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 40 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 44 H 0.02 1.29 7.62 -2.39 -0.02 1.28 16 45 H 0.03 1.45 7.38 -2.39 -0.02 1.43 16 46 H 0.12 1.57 7.63 -2.39 -0.02 1.55 16 47 H 0.09 1.63 7.06 -2.39 -0.02 1.61 16 48 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.10 0.88 6.16 -2.39 -0.01 0.87 16 Total: -1.00 -74.61 407.69 2.48 -72.13 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.19 Total: 16.78 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.69 Total: -3.21 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.67 Total: -107.19 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.76 Total: -25.81 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.61 2.48 -72.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327684354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.566 kcal (2) G-P(sol) polarization free energy of solvation -74.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds