Wall clock time and date at job start Wed Apr 1 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99874 * 2 1 4 4 O 1.21286 * 119.99927 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00183 * 0.02562 * 3 2 1 6 6 O 1.42902 * 109.46993 * 179.97438 * 5 3 2 7 7 C 1.42898 * 113.99764 * 179.97438 * 6 5 3 8 8 C 1.50695 * 109.47296 * 179.97438 * 7 6 5 9 9 C 1.32568 * 119.99995 * 136.49133 * 8 7 6 10 10 C 1.47813 * 120.00121 * 7.71384 * 9 8 7 11 11 C 1.39536 * 120.14062 * 215.93469 * 10 9 8 12 12 C 1.37971 * 119.85306 * 179.67458 * 11 10 9 13 13 C 1.38350 * 120.14129 * 0.62973 * 12 11 10 14 14 C 1.38344 * 120.28639 * 359.66632 * 13 12 11 15 15 C 1.37972 * 120.14201 * 0.02562 * 14 13 12 16 16 C 1.46499 * 120.00107 * 180.02562 * 2 1 3 17 17 C 1.53785 * 113.61379 * 116.13558 * 16 2 1 18 18 C 1.53773 * 87.08281 * 270.88390 * 17 16 2 19 19 N 1.46498 * 113.61583 * 89.11771 * 18 17 16 20 20 C 1.36939 * 120.00285 * 159.72474 * 19 18 17 21 21 H 1.07995 * 120.00287 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99762 * 180.02562 * 20 19 18 23 23 N 1.31610 * 120.00207 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99548 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47085 * 59.99934 * 24 22 20 26 26 H 1.48501 * 109.46753 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47165 * 299.99785 * 24 22 20 28 28 C 1.53781 * 113.61341 * 18.64115 * 16 2 1 29 29 H 1.09003 * 109.46338 * 271.89526 * 1 2 3 30 30 H 1.08996 * 109.47480 * 31.89245 * 1 2 3 31 31 H 1.08996 * 109.47091 * 151.90424 * 1 2 3 32 32 H 1.09005 * 109.46760 * 299.99834 * 5 3 2 33 33 H 1.08997 * 109.46901 * 59.99513 * 5 3 2 34 34 H 1.09004 * 109.47507 * 300.00149 * 7 6 5 35 35 H 1.09006 * 109.47265 * 59.99770 * 7 6 5 36 36 H 1.07995 * 120.00028 * 316.49117 * 8 7 6 37 37 H 1.07997 * 119.99802 * 187.71130 * 9 8 7 38 38 H 1.07994 * 120.07293 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.93281 * 180.32309 * 12 11 10 40 40 H 1.08002 * 119.85812 * 179.70147 * 13 12 11 41 41 H 1.07997 * 119.92984 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.07240 * 180.02562 * 15 14 13 43 43 H 1.08992 * 112.90984 * 247.38811 * 16 2 1 44 44 H 1.09002 * 113.61189 * 25.43768 * 17 16 2 45 45 H 1.09006 * 113.60877 * 156.33399 * 17 16 2 46 46 H 1.08996 * 113.61508 * 220.01767 * 18 17 16 47 47 H 0.97004 * 120.00048 * 339.72490 * 19 18 17 48 48 H 0.97007 * 120.00288 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.61167 * 203.66324 * 28 16 2 50 50 H 1.08993 * 113.61684 * 334.56715 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 8 2.3140 3.5585 0.0011 7 6 1.6995 4.8485 0.0011 8 6 2.7661 5.9131 0.0022 9 6 2.6476 6.9710 -0.7879 10 6 1.3957 7.1941 -1.5415 11 6 1.4383 7.7395 -2.8251 12 6 0.2667 7.9390 -3.5258 13 6 -0.9495 7.6117 -2.9533 14 6 -0.9990 7.0764 -1.6786 15 6 0.1658 6.8660 -0.9698 16 6 2.1975 -1.2687 -0.0006 17 6 3.0431 -1.4913 -1.2657 18 6 1.7990 -2.1480 -1.8865 19 7 0.9200 -1.2025 -2.5790 20 6 0.0261 -1.6559 -3.5120 21 1 -0.0312 -2.7105 -3.7372 22 6 -0.8064 -0.7597 -4.1685 23 7 -0.7369 0.5255 -3.8937 24 14 -2.0262 -1.3783 -5.4408 25 1 -2.9634 -2.3374 -4.8028 26 1 -2.7916 -0.2310 -5.9915 27 1 -1.2938 -2.0583 -6.5392 28 6 1.3493 -2.4695 -0.4515 29 1 -0.3632 0.0340 1.0272 30 1 -0.3634 0.8725 -0.5429 31 1 -0.3633 -0.9065 -0.4840 32 1 0.7584 2.5302 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 1.0796 4.9558 -0.8891 35 1 1.0789 4.9555 0.8909 36 1 3.6270 5.8142 0.6467 37 1 3.4658 7.6697 -0.8810 38 1 2.3867 8.0003 -3.2710 39 1 0.2986 8.3562 -4.5214 40 1 -1.8642 7.7743 -3.5040 41 1 -1.9515 6.8226 -1.2373 42 1 0.1259 6.4476 0.0252 43 1 2.7440 -1.4436 0.9261 44 1 3.3413 -0.5665 -1.7598 45 1 3.8742 -2.1813 -1.1195 46 1 2.0236 -3.0327 -2.4823 47 1 0.9711 -0.2552 -2.3765 48 1 -1.3189 1.1517 -4.3522 49 1 1.7173 -3.4270 -0.0828 50 1 0.2801 -2.3347 -0.2884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333083733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:11 Heat of formation + Delta-G solvation = 21.711550 kcal Electronic energy + Delta-G solvation = -30261.075229 eV Core-core repulsion = 26255.907322 eV Total energy + Delta-G solvation = -4005.167907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13716 -39.53005 -38.17970 -37.02462 -34.68253 -34.15074 -33.14887 -31.15466 -30.11467 -29.88831 -28.08197 -26.80859 -25.95457 -24.85167 -23.98966 -22.66917 -22.58469 -22.34471 -19.82742 -19.29502 -17.87089 -17.51418 -17.11080 -16.47384 -16.30053 -16.13314 -15.88435 -15.53645 -15.04211 -14.86273 -14.70508 -14.36753 -14.13040 -13.66269 -13.48736 -13.35550 -13.08571 -12.97914 -12.70240 -12.59400 -12.32876 -12.14727 -11.97070 -11.71129 -11.61924 -11.31069 -11.18147 -11.13267 -10.87729 -10.80795 -10.75501 -10.27295 -10.13884 -10.05982 -9.79857 -9.61365 -9.49250 -9.15921 -8.96421 -8.90616 -8.36532 -8.09365 -7.01650 -5.84194 -3.12490 0.89361 1.31059 2.17761 3.01816 3.14315 3.39116 3.44646 3.44951 3.74509 4.10891 4.53183 4.62145 4.74653 4.81972 4.86937 5.00159 5.04507 5.17864 5.22505 5.25249 5.27424 5.34302 5.36673 5.43353 5.45526 5.49641 5.54842 5.68815 5.75351 5.83952 5.84833 5.87109 5.93825 5.98513 6.18724 6.20629 6.25496 6.31058 6.38415 6.42573 6.46628 6.60397 6.62289 6.67652 6.79383 6.88874 6.91772 7.08065 7.25843 7.66272 7.82875 8.35465 8.63100 9.46804 10.04815 10.41165 11.37903 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.003368 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.979057 B = 8311.835613 C =10814.206582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.585 5.585 3 C 0.520 3.480 4 O -0.527 6.527 5 C 0.046 3.954 6 O -0.361 6.361 7 C 0.078 3.922 8 C -0.129 4.129 9 C -0.117 4.117 10 C -0.060 4.060 11 C -0.107 4.107 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.131 3.869 17 C -0.162 4.162 18 C 0.165 3.835 19 N -0.704 5.704 20 C -0.243 4.243 21 H 0.071 0.929 22 C -0.009 4.009 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.184 4.184 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.387 0.613 48 H 0.256 0.744 49 H 0.081 0.919 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 11.666 9.316 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.319 5.319 3 C 0.307 3.693 4 O -0.403 6.403 5 C -0.033 4.033 6 O -0.280 6.280 7 C 0.002 3.998 8 C -0.147 4.147 9 C -0.135 4.135 10 C -0.060 4.060 11 C -0.125 4.125 12 C -0.138 4.138 13 C -0.136 4.136 14 C -0.137 4.137 15 C -0.133 4.133 16 C 0.028 3.972 17 C -0.201 4.201 18 C 0.052 3.948 19 N -0.344 5.344 20 C -0.374 4.374 21 H 0.089 0.911 22 C -0.205 4.205 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.225 4.225 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.222 0.778 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.334 11.579 9.157 14.822 hybrid contribution -1.078 0.035 -0.669 1.269 sum 0.255 11.614 8.488 14.387 Atomic orbital electron populations 1.22048 0.78791 1.06341 1.00143 1.47362 1.07182 1.04558 1.72826 1.20034 0.87899 0.84588 0.76802 1.90672 1.13680 1.87177 1.48811 1.22279 0.92066 0.86217 1.02782 1.87973 1.31930 1.12594 1.95464 1.21976 0.94456 0.82442 1.00879 1.23032 0.99891 0.93620 0.98175 1.21645 0.95959 0.99456 0.96441 1.19103 0.93139 0.99242 0.94557 1.21262 0.98455 0.98908 0.93918 1.21108 0.92544 1.00265 0.99852 1.21234 0.97975 0.98909 0.95506 1.21107 0.98221 0.99270 0.95078 1.21461 0.91891 0.99636 1.00297 1.21733 0.94468 0.83455 0.97592 1.23700 0.97736 1.01844 0.96851 1.21159 0.89773 0.93354 0.90469 1.42280 1.41305 1.05756 1.45083 1.19252 1.11508 0.92891 1.13755 0.91118 1.24705 1.00203 0.95325 1.00287 1.69636 1.41906 1.00802 1.45540 0.86280 0.81043 0.77307 0.81598 1.21285 1.21747 1.21309 1.24255 1.00581 0.95676 1.02010 0.93953 0.90659 0.87953 0.89175 0.90864 0.91097 0.92459 0.85662 0.85506 0.85871 0.85979 0.86060 0.85837 0.85709 0.91229 0.90773 0.89868 0.92128 0.77770 0.93452 0.90101 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 8.59 59.85 0.51 1.64 16 2 N -0.58 -10.41 2.10 -173.00 -0.36 -10.77 16 3 C 0.52 10.00 7.45 -10.99 -0.08 9.92 16 4 O -0.53 -11.86 15.50 -14.36 -0.22 -12.08 16 5 C 0.05 0.75 5.00 36.01 0.18 0.93 16 6 O -0.36 -6.19 9.86 -55.14 -0.54 -6.73 16 7 C 0.08 1.03 4.54 36.00 0.16 1.19 16 8 C -0.13 -1.53 9.84 -36.22 -0.36 -1.89 16 9 C -0.12 -1.27 9.80 -37.57 -0.37 -1.64 16 10 C -0.06 -0.71 5.15 -105.01 -0.54 -1.25 16 11 C -0.11 -1.20 9.79 -39.20 -0.38 -1.58 16 12 C -0.12 -1.28 10.03 -39.64 -0.40 -1.67 16 13 C -0.12 -1.26 10.04 -39.50 -0.40 -1.65 16 14 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 15 C -0.12 -1.29 7.43 -39.19 -0.29 -1.58 16 16 C 0.13 2.27 4.13 -67.12 -0.28 1.99 16 17 C -0.16 -3.02 7.13 -25.92 -0.18 -3.21 16 18 C 0.16 3.29 4.55 -67.12 -0.31 2.98 16 19 N -0.70 -17.01 4.00 -52.64 -0.21 -17.22 16 20 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -26.36 13.06 55.49 0.72 -25.64 16 24 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C -0.18 -3.05 7.16 -25.92 -0.19 -3.23 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.28 6.52 -51.93 -0.34 0.94 16 31 H 0.10 1.88 4.65 -51.93 -0.24 1.63 16 32 H 0.09 1.52 7.40 -51.93 -0.38 1.14 16 33 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 34 H 0.07 0.99 5.35 -51.93 -0.28 0.71 16 35 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.22 5.90 -52.48 -0.31 0.91 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.63 7.23 -51.93 -0.38 1.25 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 47 H 0.39 9.92 6.15 -40.82 -0.25 9.67 16 48 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.08 1.37 5.62 -51.93 -0.29 1.08 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -32.39 401.15 -10.63 -43.01 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -7.48 Total: 14.48 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.56 Total: -7.64 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.15 Total: -53.63 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.77 Total: -18.81 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.39 -10.63 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333083733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.726 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds