Wall clock time and date at job start Wed Apr 1 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99874 * 2 1 4 4 O 1.21286 * 119.99927 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00183 * 0.02562 * 3 2 1 6 6 O 1.42902 * 109.46993 * 179.97438 * 5 3 2 7 7 C 1.42898 * 113.99764 * 179.97438 * 6 5 3 8 8 C 1.50695 * 109.47296 * 179.97438 * 7 6 5 9 9 C 1.32568 * 119.99995 * 136.49133 * 8 7 6 10 10 C 1.47813 * 120.00121 * 7.71384 * 9 8 7 11 11 C 1.39536 * 120.14062 * 215.93469 * 10 9 8 12 12 C 1.37971 * 119.85306 * 179.67458 * 11 10 9 13 13 C 1.38350 * 120.14129 * 0.62973 * 12 11 10 14 14 C 1.38344 * 120.28639 * 359.66632 * 13 12 11 15 15 C 1.37972 * 120.14201 * 0.02562 * 14 13 12 16 16 C 1.46499 * 120.00107 * 180.02562 * 2 1 3 17 17 C 1.53785 * 113.61379 * 116.13558 * 16 2 1 18 18 C 1.53773 * 87.08281 * 270.88390 * 17 16 2 19 19 N 1.46498 * 113.61583 * 89.11771 * 18 17 16 20 20 C 1.36939 * 120.00285 * 159.72474 * 19 18 17 21 21 H 1.07995 * 120.00287 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99762 * 180.02562 * 20 19 18 23 23 N 1.31610 * 120.00207 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99548 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47085 * 59.99934 * 24 22 20 26 26 H 1.48501 * 109.46753 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47165 * 299.99785 * 24 22 20 28 28 C 1.53781 * 113.61341 * 18.64115 * 16 2 1 29 29 H 1.09003 * 109.46338 * 271.89526 * 1 2 3 30 30 H 1.08996 * 109.47480 * 31.89245 * 1 2 3 31 31 H 1.08996 * 109.47091 * 151.90424 * 1 2 3 32 32 H 1.09005 * 109.46760 * 299.99834 * 5 3 2 33 33 H 1.08997 * 109.46901 * 59.99513 * 5 3 2 34 34 H 1.09004 * 109.47507 * 300.00149 * 7 6 5 35 35 H 1.09006 * 109.47265 * 59.99770 * 7 6 5 36 36 H 1.07995 * 120.00028 * 316.49117 * 8 7 6 37 37 H 1.07997 * 119.99802 * 187.71130 * 9 8 7 38 38 H 1.07994 * 120.07293 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.93281 * 180.32309 * 12 11 10 40 40 H 1.08002 * 119.85812 * 179.70147 * 13 12 11 41 41 H 1.07997 * 119.92984 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.07240 * 180.02562 * 15 14 13 43 43 H 1.08992 * 112.90984 * 247.38811 * 16 2 1 44 44 H 1.09002 * 113.61189 * 25.43768 * 17 16 2 45 45 H 1.09006 * 113.60877 * 156.33399 * 17 16 2 46 46 H 1.08996 * 113.61508 * 220.01767 * 18 17 16 47 47 H 0.97004 * 120.00048 * 339.72490 * 19 18 17 48 48 H 0.97007 * 120.00288 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.61167 * 203.66324 * 28 16 2 50 50 H 1.08993 * 113.61684 * 334.56715 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 8 2.3140 3.5585 0.0011 7 6 1.6995 4.8485 0.0011 8 6 2.7661 5.9131 0.0022 9 6 2.6476 6.9710 -0.7879 10 6 1.3957 7.1941 -1.5415 11 6 1.4383 7.7395 -2.8251 12 6 0.2667 7.9390 -3.5258 13 6 -0.9495 7.6117 -2.9533 14 6 -0.9990 7.0764 -1.6786 15 6 0.1658 6.8660 -0.9698 16 6 2.1975 -1.2687 -0.0006 17 6 3.0431 -1.4913 -1.2657 18 6 1.7990 -2.1480 -1.8865 19 7 0.9200 -1.2025 -2.5790 20 6 0.0261 -1.6559 -3.5120 21 1 -0.0312 -2.7105 -3.7372 22 6 -0.8064 -0.7597 -4.1685 23 7 -0.7369 0.5255 -3.8937 24 14 -2.0262 -1.3783 -5.4408 25 1 -2.9634 -2.3374 -4.8028 26 1 -2.7916 -0.2310 -5.9915 27 1 -1.2938 -2.0583 -6.5392 28 6 1.3493 -2.4695 -0.4515 29 1 -0.3632 0.0340 1.0272 30 1 -0.3634 0.8725 -0.5429 31 1 -0.3633 -0.9065 -0.4840 32 1 0.7584 2.5302 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 1.0796 4.9558 -0.8891 35 1 1.0789 4.9555 0.8909 36 1 3.6270 5.8142 0.6467 37 1 3.4658 7.6697 -0.8810 38 1 2.3867 8.0003 -3.2710 39 1 0.2986 8.3562 -4.5214 40 1 -1.8642 7.7743 -3.5040 41 1 -1.9515 6.8226 -1.2373 42 1 0.1259 6.4476 0.0252 43 1 2.7440 -1.4436 0.9261 44 1 3.3413 -0.5665 -1.7598 45 1 3.8742 -2.1813 -1.1195 46 1 2.0236 -3.0327 -2.4823 47 1 0.9711 -0.2552 -2.3765 48 1 -1.3189 1.1517 -4.3522 49 1 1.7173 -3.4270 -0.0828 50 1 0.2801 -2.3347 -0.2884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333083733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:11 Heat of formation + Delta-G solvation = 5.310841 kcal Electronic energy + Delta-G solvation = -30261.786417 eV Core-core repulsion = 26255.907322 eV Total energy + Delta-G solvation = -4005.879095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58713 -40.39796 -39.52312 -38.35050 -35.76967 -35.61939 -34.92719 -31.98907 -31.89748 -30.89615 -29.30380 -28.20098 -27.05236 -26.40586 -25.68009 -24.19235 -23.45918 -23.24551 -21.22472 -20.27615 -19.47296 -19.18047 -18.35733 -17.69227 -17.53510 -17.33009 -17.10031 -16.63836 -16.43994 -16.38476 -15.81302 -15.57011 -15.50665 -15.06044 -14.86449 -14.56720 -14.31287 -14.24643 -13.93599 -13.62342 -13.54342 -13.37486 -13.28488 -13.18113 -13.03753 -12.72179 -12.60119 -12.54118 -12.42315 -12.18088 -11.97433 -11.70128 -11.67105 -11.62221 -11.18447 -11.13397 -10.83222 -10.63740 -10.53121 -9.80917 -9.52105 -9.22441 -8.94806 -7.89948 -5.17896 0.03783 0.48379 1.28121 1.50311 1.52038 1.56251 1.57621 1.85504 2.58364 2.85814 2.98223 3.41185 3.48809 3.74717 3.77992 3.84499 3.95308 3.96155 4.06112 4.07718 4.15824 4.19434 4.23767 4.26068 4.32913 4.36146 4.37848 4.44141 4.56961 4.60667 4.68121 4.81077 4.85279 4.91846 4.95243 5.03635 5.09479 5.13153 5.13747 5.35947 5.37316 5.40215 5.44209 5.55193 5.60358 5.62292 5.71658 5.77787 6.04085 6.09797 6.31764 6.42090 7.17727 7.38758 8.13838 8.39943 9.32071 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.003368 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.979057 B = 8311.835613 C =10814.206582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.583 5.583 3 C 0.510 3.490 4 O -0.569 6.569 5 C 0.053 3.947 6 O -0.389 6.389 7 C 0.077 3.923 8 C -0.148 4.148 9 C -0.107 4.107 10 C -0.081 4.081 11 C -0.121 4.121 12 C -0.131 4.131 13 C -0.129 4.129 14 C -0.131 4.131 15 C -0.125 4.125 16 C 0.127 3.873 17 C -0.157 4.157 18 C 0.145 3.855 19 N -0.716 5.716 20 C -0.243 4.243 21 H 0.075 0.925 22 C -0.063 4.063 23 N -0.960 5.960 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.287 1.287 28 C -0.158 4.158 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.088 0.912 44 H 0.033 0.967 45 H 0.111 0.889 46 H 0.062 0.938 47 H 0.377 0.623 48 H 0.249 0.751 49 H 0.117 0.883 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 10.924 10.362 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.317 5.317 3 C 0.298 3.702 4 O -0.448 6.448 5 C -0.026 4.026 6 O -0.309 6.309 7 C 0.002 3.998 8 C -0.165 4.165 9 C -0.124 4.124 10 C -0.081 4.081 11 C -0.139 4.139 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.143 4.143 16 C 0.024 3.976 17 C -0.197 4.197 18 C 0.035 3.965 19 N -0.356 5.356 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.256 4.256 23 N -0.610 5.610 24 Si 0.796 3.204 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.214 1.214 28 C -0.198 4.198 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.052 0.948 45 H 0.130 0.870 46 H 0.080 0.920 47 H 0.210 0.790 48 H 0.058 0.942 49 H 0.135 0.865 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.589 10.787 10.226 14.875 hybrid contribution -0.806 0.245 -1.030 1.330 sum -0.217 11.032 9.196 14.364 Atomic orbital electron populations 1.22049 0.77809 1.04840 1.02096 1.47480 1.07800 1.04558 1.71827 1.20591 0.87668 0.85808 0.76086 1.90637 1.15379 1.87850 1.50943 1.22241 0.91603 0.84951 1.03830 1.87936 1.33270 1.14000 1.95660 1.22136 0.95035 0.81120 1.01528 1.23067 1.00198 0.93817 0.99461 1.21865 0.96116 0.99338 0.95108 1.19353 0.93692 0.99930 0.95157 1.21539 0.99398 0.98945 0.94007 1.21423 0.92489 1.00199 1.00752 1.21568 0.98816 0.98589 0.95726 1.21412 0.98917 0.99206 0.95356 1.21675 0.92034 0.99634 1.00930 1.21877 0.94450 0.83634 0.97628 1.23696 0.98257 1.00486 0.97217 1.21455 0.90138 0.92789 0.92127 1.42378 1.41782 1.05917 1.45491 1.19575 1.11290 0.93049 1.13587 0.90702 1.25380 1.02232 0.95555 1.02419 1.69786 1.42816 1.01674 1.46684 0.85328 0.79115 0.76557 0.79368 1.20165 1.22498 1.21358 1.24062 1.00426 0.96940 0.98378 0.90097 0.91829 0.89754 0.90391 0.87208 0.92165 0.89990 0.85032 0.83447 0.84570 0.84163 0.84329 0.84205 0.84744 0.89413 0.94765 0.87047 0.92032 0.79000 0.94177 0.86458 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.33 8.59 127.77 1.10 3.43 16 2 N -0.58 -20.33 2.10 -819.64 -1.73 -22.05 16 3 C 0.51 19.73 7.45 87.66 0.65 20.39 16 4 O -0.57 -26.09 15.50 15.99 0.25 -25.84 16 5 C 0.05 1.73 5.00 71.24 0.36 2.08 16 6 O -0.39 -13.49 9.86 -129.94 -1.28 -14.77 16 7 C 0.08 2.01 4.54 71.23 0.32 2.34 16 8 C -0.15 -3.45 9.84 24.53 0.24 -3.21 16 9 C -0.11 -2.26 9.80 23.65 0.23 -2.03 16 10 C -0.08 -1.88 5.15 -20.12 -0.10 -1.99 16 11 C -0.12 -2.66 9.79 22.52 0.22 -2.44 16 12 C -0.13 -2.72 10.03 22.23 0.22 -2.50 16 13 C -0.13 -2.67 10.04 22.32 0.22 -2.44 16 14 C -0.13 -2.76 10.03 22.23 0.22 -2.54 16 15 C -0.12 -2.76 7.43 22.52 0.17 -2.60 16 16 C 0.13 4.19 4.13 45.52 0.19 4.38 16 17 C -0.16 -5.76 7.13 31.12 0.22 -5.54 16 18 C 0.15 5.65 4.55 45.52 0.21 5.86 16 19 N -0.72 -34.76 4.00 -320.46 -1.28 -36.04 16 20 C -0.24 -12.87 9.98 84.03 0.84 -12.03 16 21 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 23 N -0.96 -55.30 13.06 21.65 0.28 -55.02 16 24 Si 0.97 44.40 29.55 68.60 2.03 46.43 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 28 C -0.16 -4.80 7.16 31.12 0.22 -4.58 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 2.15 6.52 -2.39 -0.02 2.14 16 31 H 0.08 3.01 4.65 -2.39 -0.01 2.99 16 32 H 0.08 2.72 7.40 -2.38 -0.02 2.70 16 33 H 0.11 2.69 8.11 -2.39 -0.02 2.67 16 34 H 0.06 1.70 5.35 -2.38 -0.01 1.69 16 35 H 0.08 1.68 7.52 -2.38 -0.02 1.66 16 36 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.13 2.56 5.90 -2.91 -0.02 2.55 16 43 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.03 1.53 7.23 -2.39 -0.02 1.51 16 45 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 46 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 47 H 0.38 19.72 6.15 -92.71 -0.57 19.15 16 48 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 49 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 50 H 0.08 2.46 5.62 -2.39 -0.01 2.45 16 Total: -1.00 -71.19 401.15 4.65 -66.54 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: 0.38 Total: 47.12 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.00 Total: -6.38 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -2.73 Total: -113.11 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.03 Total: -40.61 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.19 4.65 -66.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333083733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.851 kcal (2) G-P(sol) polarization free energy of solvation -71.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds