Wall clock time and date at job start Wed Apr 1 2020 03:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36738 * 127.13981 * 2 1 4 4 C 1.50705 * 126.34515 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46890 * 89.99931 * 4 3 2 6 6 C 1.50705 * 109.46856 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00218 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99513 * 179.72267 * 6 5 4 9 9 N 1.31515 * 119.99652 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00534 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46854 * 89.99848 * 10 8 6 12 12 H 1.48498 * 109.47278 * 209.99784 * 10 8 6 13 13 H 1.48503 * 109.47111 * 330.00178 * 10 8 6 14 14 N 1.30293 * 107.30844 * 180.26209 * 3 2 1 15 15 N 1.28533 * 110.05334 * 359.56262 * 14 3 2 16 16 C 1.31217 * 109.85647 * 0.44907 * 15 14 3 17 17 N 1.38583 * 126.47210 * 179.72992 * 16 15 14 18 18 C 1.46953 * 110.99737 * 62.01917 * 17 16 15 19 19 C 1.53056 * 109.36645 * 176.81242 * 18 17 16 20 20 N 1.46952 * 109.36139 * 58.39724 * 19 18 17 21 21 C 1.38425 * 110.99932 * 176.81682 * 20 19 18 22 22 N 1.32732 * 119.65718 * 303.79723 * 21 20 19 23 23 C 1.32385 * 119.46170 * 179.97438 * 22 21 20 24 24 C 1.38752 * 118.82618 * 0.02562 * 23 22 21 25 25 N 1.32167 * 119.29052 * 359.97438 * 24 23 22 26 26 N 1.28740 * 120.48885 * 359.74105 * 25 24 23 27 27 C 1.46961 * 110.88617 * 300.68196 * 20 19 18 28 28 C 1.46958 * 111.00117 * 298.21963 * 17 16 15 29 29 H 1.08994 * 109.47525 * 85.53248 * 1 2 3 30 30 H 1.09004 * 109.47114 * 205.53702 * 1 2 3 31 31 H 1.08998 * 109.46935 * 325.53386 * 1 2 3 32 32 H 1.08993 * 109.47086 * 330.00034 * 4 3 2 33 33 H 1.08998 * 109.47051 * 209.99755 * 4 3 2 34 34 H 1.09001 * 109.46989 * 60.00464 * 5 4 3 35 35 H 1.08994 * 109.47689 * 300.00228 * 5 4 3 36 36 H 0.96997 * 120.00311 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.49223 * 296.78012 * 18 17 16 38 38 H 1.09005 * 109.49096 * 56.84712 * 18 17 16 39 39 H 1.09004 * 109.48726 * 298.43469 * 19 18 17 40 40 H 1.08993 * 109.51176 * 178.38066 * 19 18 17 41 41 H 1.07997 * 120.58719 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.34992 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.48694 * 299.35646 * 27 20 19 44 44 H 1.08994 * 109.50684 * 179.29925 * 27 20 19 45 45 H 1.09006 * 109.48630 * 303.15718 * 28 17 16 46 46 H 1.09002 * 109.48861 * 63.19881 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8621 2.5349 0.0005 5 6 1.7177 3.0234 1.4432 6 6 1.2899 4.4685 1.4438 7 1 1.1360 4.9864 0.5087 8 6 1.0889 5.1274 2.6381 9 7 0.7151 6.3883 2.6386 10 14 1.3476 4.2293 4.2555 11 1 2.7585 4.3893 4.6903 12 1 0.4440 4.7981 5.2876 13 1 1.0460 2.7866 4.0743 14 7 3.5162 0.6480 -0.0057 15 7 3.5212 -0.6373 0.0000 16 6 2.2888 -1.0878 0.0000 17 7 1.8977 -2.4173 -0.0001 18 6 2.3667 -3.1042 1.2115 19 6 1.8482 -4.5443 1.2113 20 7 2.3219 -5.2325 0.0024 21 6 1.9313 -6.5604 0.0023 22 7 2.2652 -7.3433 1.0209 23 6 1.8891 -8.6126 1.0171 24 6 1.1532 -9.0891 -0.0584 25 7 0.8472 -8.2674 -1.0473 26 7 1.2222 -7.0363 -1.0134 27 6 1.8530 -4.5456 -1.2092 28 6 2.3714 -3.1056 -1.2090 29 1 -0.3634 0.0800 -1.0245 30 1 -0.3633 -0.9273 0.4430 31 1 -0.3633 0.8473 0.5816 32 1 0.9055 2.6304 -0.5129 33 1 2.6120 3.1364 -0.5133 34 1 2.6744 2.9280 1.9567 35 1 0.9680 2.4220 1.9572 36 1 0.5733 6.8518 3.4788 37 1 3.4565 -3.1101 1.2274 38 1 1.9926 -2.5831 2.0928 39 1 0.7583 -4.5384 1.2229 40 1 2.2184 -5.0645 2.0946 41 1 2.1512 -9.2659 1.8362 42 1 0.8340 -10.1205 -0.0871 43 1 0.7631 -4.5397 -1.2251 44 1 2.2267 -5.0665 -2.0907 45 1 2.0009 -2.5855 -2.0924 46 1 3.4614 -3.1112 -1.2208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338561634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:25 Heat of formation + Delta-G solvation = 192.191970 kcal Electronic energy + Delta-G solvation = -29472.563335 eV Core-core repulsion = 25435.833172 eV Total energy + Delta-G solvation = -4036.730162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79194 -42.38944 -39.81751 -36.58174 -35.34702 -34.97490 -33.95229 -32.49869 -31.77685 -31.58695 -29.30142 -27.72891 -26.93812 -26.49825 -25.45605 -24.28225 -23.94808 -21.91599 -21.41821 -20.38513 -19.95201 -19.09366 -18.50118 -17.32088 -16.91493 -16.82814 -16.52868 -16.24172 -15.97319 -15.35766 -15.21148 -14.93495 -14.78067 -14.34010 -14.16720 -13.59238 -13.44731 -13.24461 -12.93761 -12.76519 -12.57598 -12.56056 -12.29362 -12.17453 -11.82802 -11.80089 -11.72875 -11.57097 -11.34650 -11.20662 -11.11484 -10.55191 -10.43730 -10.07603 -9.91976 -9.90552 -9.88729 -9.33639 -9.18708 -8.96872 -8.64542 -8.62289 -6.13000 -4.12748 0.01740 0.21405 1.88596 2.28545 2.40166 2.93113 3.07123 3.20844 3.26397 3.33796 3.36302 3.53078 3.60935 3.91027 4.20040 4.37809 4.40138 4.41714 4.54621 4.71063 4.73841 4.82245 4.87094 4.93870 4.99855 5.17028 5.18929 5.20655 5.29796 5.31206 5.36103 5.50290 5.50999 5.54467 5.73742 5.84819 6.06009 6.13804 6.16103 6.24067 6.36951 6.44447 6.57658 6.73937 7.08502 7.20836 7.27700 7.65247 7.93382 8.40816 8.90105 8.97532 9.48426 10.99798 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.002092 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.083958 B =13378.715839 C =13865.752570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.466 5.466 3 C 0.214 3.786 4 C -0.023 4.023 5 C -0.004 4.004 6 C -0.524 4.524 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.878 3.122 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.269 1.269 14 N -0.295 5.295 15 N -0.307 5.307 16 C 0.316 3.684 17 N -0.463 5.463 18 C 0.067 3.933 19 C 0.071 3.929 20 N -0.453 5.453 21 C 0.436 3.564 22 N -0.481 5.481 23 C 0.155 3.845 24 C -0.048 4.048 25 N -0.167 5.167 26 N -0.312 5.312 27 C 0.070 3.930 28 C 0.067 3.933 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.021 0.979 35 H 0.013 0.987 36 H 0.265 0.735 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.189 0.811 42 H 0.187 0.813 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 -31.908 -4.579 32.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.158 5.158 3 C -0.053 4.053 4 C -0.063 4.063 5 C -0.043 4.043 6 C -0.561 4.561 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.706 3.294 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.193 1.193 14 N -0.135 5.135 15 N -0.151 5.151 16 C -0.040 4.040 17 N -0.189 5.189 18 C -0.061 4.061 19 C -0.055 4.055 20 N -0.174 5.174 21 C 0.078 3.922 22 N -0.205 5.205 23 C -0.024 4.024 24 C -0.218 4.218 25 N -0.016 5.016 26 N -0.166 5.166 27 C -0.057 4.057 28 C -0.061 4.061 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.206 0.794 42 H 0.204 0.796 43 H 0.088 0.912 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.134 -30.939 -5.266 31.404 hybrid contribution -0.974 -1.143 1.667 2.244 sum -2.108 -32.082 -3.599 32.352 Atomic orbital electron populations 1.22050 0.75224 1.05259 1.03921 1.46239 1.08950 1.05975 1.54643 1.25699 0.86356 0.92559 1.00731 1.20264 1.01747 0.82344 1.01978 1.19548 0.97032 0.97345 0.90325 1.20999 1.46500 0.93877 0.94768 0.90558 1.24970 0.94378 0.94679 0.99077 1.69896 1.46910 1.09808 1.27037 0.86807 0.78575 0.80329 0.83729 1.20031 1.21284 1.19341 1.74086 1.17656 1.02028 1.19747 1.74513 1.16914 1.04439 1.19234 1.21992 0.86373 0.87518 1.08108 1.58740 1.59459 0.96338 1.04364 1.22261 1.00554 0.91669 0.91613 1.22368 0.99062 0.93336 0.90705 1.58512 1.54810 0.97453 1.06579 1.22552 0.87828 0.93566 0.88241 1.68682 1.20154 1.05330 1.26327 1.24161 0.89356 0.91306 0.97548 1.24960 1.00199 1.03476 0.93186 1.73581 1.10546 0.96872 1.20596 1.74000 1.11063 1.07493 1.24044 1.22276 1.00195 0.92518 0.90709 1.22293 1.00275 0.92059 0.91480 0.90320 0.89065 0.88581 0.90434 0.88555 0.96056 0.96860 0.92564 0.91175 0.88904 0.92233 0.87588 0.79387 0.79573 0.91203 0.88023 0.88956 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.88 59.85 0.65 1.54 16 2 N -0.47 -7.17 3.21 -121.46 -0.39 -7.56 16 3 C 0.21 3.93 7.32 -154.01 -1.13 2.81 16 4 C -0.02 -0.45 5.45 -27.88 -0.15 -0.60 16 5 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 6 C -0.52 -14.22 9.66 -34.44 -0.33 -14.55 16 7 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 10 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 14 N -0.30 -5.99 12.18 32.99 0.40 -5.59 16 15 N -0.31 -5.67 12.19 30.32 0.37 -5.30 16 16 C 0.32 4.84 6.45 -318.87 -2.06 2.78 16 17 N -0.46 -5.42 4.71 -174.35 -0.82 -6.24 16 18 C 0.07 0.71 5.53 -3.77 -0.02 0.69 16 19 C 0.07 0.63 5.47 -3.77 -0.02 0.61 16 20 N -0.45 -4.41 4.77 -175.10 -0.84 -5.25 16 21 C 0.44 4.32 7.23 -322.21 -2.33 1.99 16 22 N -0.48 -4.13 9.85 -13.77 -0.14 -4.26 16 23 C 0.15 0.76 11.32 -17.12 -0.19 0.56 16 24 C -0.05 -0.25 11.35 -17.22 -0.20 -0.44 16 25 N -0.17 -1.52 11.62 30.62 0.36 -1.17 16 26 N -0.31 -3.26 9.89 29.84 0.30 -2.96 16 27 C 0.07 0.63 4.78 -3.77 -0.02 0.62 16 28 C 0.07 0.69 5.53 -3.77 -0.02 0.66 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.88 8.12 -51.93 -0.42 0.45 16 31 H 0.10 1.13 8.04 -51.93 -0.42 0.72 16 32 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 34 H 0.02 0.51 7.58 -51.93 -0.39 0.12 16 35 H 0.01 0.30 7.18 -51.93 -0.37 -0.07 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.87 7.66 -51.93 -0.40 0.47 16 41 H 0.19 0.09 8.06 -52.49 -0.42 -0.33 16 42 H 0.19 0.19 8.06 -52.49 -0.42 -0.23 16 43 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 44 H 0.10 0.89 7.82 -51.93 -0.41 0.48 16 45 H 0.09 0.91 8.13 -51.93 -0.42 0.48 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -35.52 382.86 -11.54 -47.06 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.63 Total: -3.50 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -6.03 Total: -1.63 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.01 Total: -64.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.52 -11.54 -47.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338561634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.252 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds