Wall clock time and date at job start Wed Apr 1 2020 03:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36738 * 127.13981 * 2 1 4 4 C 1.50705 * 126.34515 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46890 * 89.99931 * 4 3 2 6 6 C 1.50705 * 109.46856 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00218 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99513 * 179.72267 * 6 5 4 9 9 N 1.31515 * 119.99652 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00534 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46854 * 89.99848 * 10 8 6 12 12 H 1.48498 * 109.47278 * 209.99784 * 10 8 6 13 13 H 1.48503 * 109.47111 * 330.00178 * 10 8 6 14 14 N 1.30293 * 107.30844 * 180.26209 * 3 2 1 15 15 N 1.28533 * 110.05334 * 359.56262 * 14 3 2 16 16 C 1.31217 * 109.85647 * 0.44907 * 15 14 3 17 17 N 1.38583 * 126.47210 * 179.72992 * 16 15 14 18 18 C 1.46953 * 110.99737 * 62.01917 * 17 16 15 19 19 C 1.53056 * 109.36645 * 176.81242 * 18 17 16 20 20 N 1.46952 * 109.36139 * 58.39724 * 19 18 17 21 21 C 1.38425 * 110.99932 * 176.81682 * 20 19 18 22 22 N 1.32732 * 119.65718 * 303.79723 * 21 20 19 23 23 C 1.32385 * 119.46170 * 179.97438 * 22 21 20 24 24 C 1.38752 * 118.82618 * 0.02562 * 23 22 21 25 25 N 1.32167 * 119.29052 * 359.97438 * 24 23 22 26 26 N 1.28740 * 120.48885 * 359.74105 * 25 24 23 27 27 C 1.46961 * 110.88617 * 300.68196 * 20 19 18 28 28 C 1.46958 * 111.00117 * 298.21963 * 17 16 15 29 29 H 1.08994 * 109.47525 * 85.53248 * 1 2 3 30 30 H 1.09004 * 109.47114 * 205.53702 * 1 2 3 31 31 H 1.08998 * 109.46935 * 325.53386 * 1 2 3 32 32 H 1.08993 * 109.47086 * 330.00034 * 4 3 2 33 33 H 1.08998 * 109.47051 * 209.99755 * 4 3 2 34 34 H 1.09001 * 109.46989 * 60.00464 * 5 4 3 35 35 H 1.08994 * 109.47689 * 300.00228 * 5 4 3 36 36 H 0.96997 * 120.00311 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.49223 * 296.78012 * 18 17 16 38 38 H 1.09005 * 109.49096 * 56.84712 * 18 17 16 39 39 H 1.09004 * 109.48726 * 298.43469 * 19 18 17 40 40 H 1.08993 * 109.51176 * 178.38066 * 19 18 17 41 41 H 1.07997 * 120.58719 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.34992 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.48694 * 299.35646 * 27 20 19 44 44 H 1.08994 * 109.50684 * 179.29925 * 27 20 19 45 45 H 1.09006 * 109.48630 * 303.15718 * 28 17 16 46 46 H 1.09002 * 109.48861 * 63.19881 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8621 2.5349 0.0005 5 6 1.7177 3.0234 1.4432 6 6 1.2899 4.4685 1.4438 7 1 1.1360 4.9864 0.5087 8 6 1.0889 5.1274 2.6381 9 7 0.7151 6.3883 2.6386 10 14 1.3476 4.2293 4.2555 11 1 2.7585 4.3893 4.6903 12 1 0.4440 4.7981 5.2876 13 1 1.0460 2.7866 4.0743 14 7 3.5162 0.6480 -0.0057 15 7 3.5212 -0.6373 0.0000 16 6 2.2888 -1.0878 0.0000 17 7 1.8977 -2.4173 -0.0001 18 6 2.3667 -3.1042 1.2115 19 6 1.8482 -4.5443 1.2113 20 7 2.3219 -5.2325 0.0024 21 6 1.9313 -6.5604 0.0023 22 7 2.2652 -7.3433 1.0209 23 6 1.8891 -8.6126 1.0171 24 6 1.1532 -9.0891 -0.0584 25 7 0.8472 -8.2674 -1.0473 26 7 1.2222 -7.0363 -1.0134 27 6 1.8530 -4.5456 -1.2092 28 6 2.3714 -3.1056 -1.2090 29 1 -0.3634 0.0800 -1.0245 30 1 -0.3633 -0.9273 0.4430 31 1 -0.3633 0.8473 0.5816 32 1 0.9055 2.6304 -0.5129 33 1 2.6120 3.1364 -0.5133 34 1 2.6744 2.9280 1.9567 35 1 0.9680 2.4220 1.9572 36 1 0.5733 6.8518 3.4788 37 1 3.4565 -3.1101 1.2274 38 1 1.9926 -2.5831 2.0928 39 1 0.7583 -4.5384 1.2229 40 1 2.2184 -5.0645 2.0946 41 1 2.1512 -9.2659 1.8362 42 1 0.8340 -10.1205 -0.0871 43 1 0.7631 -4.5397 -1.2251 44 1 2.2267 -5.0665 -2.0907 45 1 2.0009 -2.5855 -2.0924 46 1 3.4614 -3.1112 -1.2208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338561634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:24 Heat of formation + Delta-G solvation = 169.539750 kcal Electronic energy + Delta-G solvation = -29473.545609 eV Core-core repulsion = 25435.833172 eV Total energy + Delta-G solvation = -4037.712436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.08455 -42.94737 -40.60671 -37.42975 -36.40201 -35.90811 -35.54559 -33.89014 -32.93184 -32.36596 -30.67411 -28.82376 -27.93292 -27.11124 -27.04513 -24.92785 -24.69599 -23.44732 -22.69857 -21.63910 -21.06448 -19.68095 -19.24095 -19.00017 -18.16575 -17.55754 -17.35772 -17.14906 -16.95557 -16.38306 -16.07572 -15.86369 -15.71210 -15.56471 -15.30081 -15.05094 -14.78770 -14.62876 -14.31065 -13.71451 -13.68322 -13.38435 -13.14269 -13.00144 -12.94197 -12.78394 -12.75324 -12.53443 -12.52441 -12.44177 -12.21917 -12.09460 -11.81816 -11.77348 -11.55476 -11.43026 -11.10097 -10.78508 -10.44752 -10.10074 -10.05688 -9.73597 -8.30319 -6.34311 -0.44809 -0.29126 0.62550 1.16822 1.33606 1.36146 1.45209 1.68526 1.77640 2.33401 2.41786 2.52331 2.71118 3.05001 3.12967 3.36412 3.43917 3.55339 3.74228 3.77673 3.82203 3.97880 4.01246 4.07168 4.15780 4.19483 4.23532 4.35864 4.37467 4.51751 4.55325 4.59820 4.66319 4.67043 4.72884 4.78034 4.84703 4.92814 5.03487 5.19478 5.26773 5.37921 5.40868 5.45068 5.53301 5.61094 6.03565 6.11108 6.24043 6.72979 7.30172 7.40170 7.62794 8.85538 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.002092 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.083958 B =13378.715839 C =13865.752570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.462 5.462 3 C 0.203 3.797 4 C -0.011 4.011 5 C 0.004 3.996 6 C -0.526 4.526 7 H 0.048 0.952 8 C 0.013 3.987 9 N -0.943 5.943 10 Si 0.941 3.059 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.252 1.252 14 N -0.329 5.329 15 N -0.340 5.340 16 C 0.337 3.663 17 N -0.453 5.453 18 C 0.070 3.930 19 C 0.084 3.916 20 N -0.465 5.465 21 C 0.422 3.578 22 N -0.504 5.504 23 C 0.166 3.834 24 C -0.030 4.030 25 N -0.207 5.207 26 N -0.341 5.341 27 C 0.084 3.916 28 C 0.071 3.929 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.008 0.992 35 H 0.022 0.978 36 H 0.267 0.733 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.237 0.763 42 H 0.230 0.770 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -35.732 -3.519 36.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.153 5.153 3 C -0.066 4.066 4 C -0.051 4.051 5 C -0.034 4.034 6 C -0.564 4.564 7 H 0.066 0.934 8 C -0.185 4.185 9 N -0.583 5.583 10 Si 0.765 3.235 11 H -0.201 1.201 12 H -0.205 1.205 13 H -0.176 1.176 14 N -0.169 5.169 15 N -0.184 5.184 16 C -0.021 4.021 17 N -0.180 5.180 18 C -0.058 4.058 19 C -0.042 4.042 20 N -0.186 5.186 21 C 0.064 3.936 22 N -0.228 5.228 23 C -0.013 4.013 24 C -0.202 4.202 25 N -0.054 5.054 26 N -0.193 5.193 27 C -0.043 4.043 28 C -0.056 4.056 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.027 0.973 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.253 0.747 42 H 0.246 0.754 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.235 -34.776 -4.247 35.106 hybrid contribution -0.664 -0.154 1.307 1.474 sum -2.898 -34.930 -2.939 35.173 Atomic orbital electron populations 1.22386 0.72696 1.06274 1.05662 1.46407 1.10316 1.05020 1.53579 1.25324 0.86569 0.92736 1.01973 1.19986 1.02672 0.82912 0.99522 1.19385 0.96185 0.94900 0.92967 1.21299 1.45558 0.95870 0.93671 0.93399 1.25827 0.94349 0.95394 1.02894 1.70028 1.48666 1.11546 1.28106 0.85803 0.78384 0.79925 0.79362 1.20069 1.20542 1.17587 1.73990 1.19072 1.03142 1.20733 1.74449 1.18840 1.03852 1.21225 1.22314 0.85658 0.88767 1.05313 1.59003 1.58872 0.94752 1.05366 1.22264 0.99604 0.92832 0.91085 1.22245 0.99175 0.91841 0.90930 1.58529 1.55460 0.97941 1.06683 1.22535 0.88610 0.93543 0.88941 1.68729 1.20984 1.06880 1.26180 1.25038 0.87427 0.90417 0.98375 1.25703 0.98173 1.04582 0.91729 1.73481 1.12089 0.97064 1.22738 1.73921 1.12170 1.08535 1.24708 1.22104 1.00029 0.91280 0.90907 1.22291 0.99331 0.92932 0.91055 0.88028 0.86981 0.88854 0.88404 0.89334 0.97347 0.95921 0.92392 0.92843 0.88671 0.91699 0.86830 0.74710 0.75354 0.91070 0.87948 0.88369 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 10.88 127.77 1.39 2.81 16 2 N -0.46 -13.55 3.21 -538.18 -1.73 -15.27 16 3 C 0.20 7.35 7.32 137.64 1.01 8.36 16 4 C -0.01 -0.42 5.45 29.85 0.16 -0.26 16 5 C 0.00 0.19 4.02 29.85 0.12 0.31 16 6 C -0.53 -28.91 9.66 25.60 0.25 -28.66 16 7 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 8 C 0.01 0.75 5.47 84.65 0.46 1.21 16 9 N -0.94 -57.48 13.96 21.45 0.30 -57.18 16 10 Si 0.94 43.91 27.47 68.60 1.88 45.79 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 14 N -0.33 -13.45 12.18 -49.53 -0.60 -14.05 16 15 N -0.34 -12.59 12.19 -58.00 -0.71 -13.29 16 16 C 0.34 10.00 6.45 260.11 1.68 11.68 16 17 N -0.45 -10.08 4.71 -705.52 -3.32 -13.40 16 18 C 0.07 1.41 5.53 86.31 0.48 1.88 16 19 C 0.08 1.37 5.47 86.31 0.47 1.84 16 20 N -0.47 -8.66 4.77 -707.91 -3.38 -12.04 16 21 C 0.42 7.85 7.23 261.28 1.89 9.74 16 22 N -0.50 -7.52 9.85 -197.47 -1.95 -9.47 16 23 C 0.17 1.02 11.32 84.73 0.96 1.98 16 24 C -0.03 -0.21 11.35 84.77 0.96 0.75 16 25 N -0.21 -3.45 11.62 -57.04 -0.66 -4.11 16 26 N -0.34 -6.81 9.89 -59.51 -0.59 -7.40 16 27 C 0.08 1.46 4.78 86.31 0.41 1.87 16 28 C 0.07 1.43 5.53 86.31 0.48 1.90 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.80 8.12 -2.38 -0.02 1.78 16 31 H 0.09 1.97 8.04 -2.39 -0.02 1.96 16 32 H 0.10 3.24 7.97 -2.39 -0.02 3.22 16 33 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.01 0.39 7.58 -2.39 -0.02 0.38 16 35 H 0.02 0.99 7.18 -2.39 -0.02 0.97 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.88 8.13 -2.38 -0.02 1.86 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 1.68 7.66 -2.39 -0.02 1.67 16 41 H 0.24 -1.03 8.06 -2.91 -0.02 -1.05 16 42 H 0.23 -0.63 8.06 -2.91 -0.02 -0.66 16 43 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 44 H 0.10 1.77 7.82 -2.39 -0.02 1.75 16 45 H 0.10 1.84 8.13 -2.38 -0.02 1.82 16 46 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -79.66 382.86 0.90 -78.76 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.94 Total: 6.23 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 10.72 Total: 15.43 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -12.64 Total: -146.21 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -79.66 0.90 -78.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338561634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.300 kcal (2) G-P(sol) polarization free energy of solvation -79.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds