Wall clock time and date at job start Wed Apr 1 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 119.99989 * 2 1 4 4 N 1.34777 * 120.00184 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00233 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47275 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.49559 * 305.07123 * 6 5 4 8 8 C 1.53045 * 109.49460 * 65.16439 * 6 5 4 9 9 C 1.53033 * 109.53655 * 181.31943 * 8 6 5 10 10 C 1.53199 * 109.31017 * 298.63241 * 9 8 6 11 11 N 1.46921 * 108.77375 * 54.64006 * 10 9 8 12 12 C 1.34776 * 120.63165 * 126.41646 * 11 10 9 13 13 O 1.21282 * 120.00252 * 179.97438 * 12 11 10 14 14 C 1.50700 * 120.00117 * 359.97438 * 12 11 10 15 15 H 1.09010 * 109.47080 * 321.88299 * 14 12 11 16 16 C 1.50699 * 109.47135 * 81.88011 * 14 12 11 17 17 H 1.07998 * 120.00222 * 33.08087 * 16 14 12 18 18 C 1.37885 * 120.00004 * 213.08437 * 16 14 12 19 19 N 1.31517 * 119.99839 * 179.45017 * 18 16 14 20 20 Si 1.86801 * 119.99884 * 359.44667 * 18 16 14 21 21 H 1.48493 * 109.47157 * 85.53053 * 20 18 16 22 22 H 1.48502 * 109.46713 * 205.52915 * 20 18 16 23 23 H 1.48496 * 109.47111 * 325.52813 * 20 18 16 24 24 C 1.50698 * 109.47521 * 201.88184 * 14 12 11 25 25 C 1.38239 * 119.99940 * 293.98926 * 24 14 12 26 26 C 1.38231 * 120.00217 * 179.74270 * 25 24 14 27 27 C 1.38240 * 119.99542 * 0.52827 * 26 25 24 28 28 C 1.38233 * 120.00393 * 359.74193 * 27 26 25 29 29 C 1.38231 * 120.00331 * 114.25701 * 24 14 12 30 30 C 1.46927 * 118.73958 * 306.38610 * 11 10 9 31 31 H 1.09004 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46942 * 299.99824 * 1 2 3 33 33 H 1.08992 * 109.47571 * 59.99871 * 1 2 3 34 34 H 0.97002 * 119.99617 * 359.97438 * 4 2 1 35 35 H 1.09003 * 109.46989 * 59.99848 * 5 4 2 36 36 H 1.08993 * 109.47468 * 300.00007 * 5 4 2 37 37 H 1.09005 * 109.45678 * 301.33944 * 8 6 5 38 38 H 1.08999 * 109.45556 * 61.29652 * 8 6 5 39 39 H 1.09000 * 109.50123 * 178.68487 * 9 8 6 40 40 H 1.09000 * 109.50277 * 58.58583 * 9 8 6 41 41 H 1.08999 * 109.58347 * 294.84502 * 10 9 8 42 42 H 1.09005 * 109.58328 * 174.42323 * 10 9 8 43 43 H 0.96994 * 119.99610 * 179.97438 * 19 18 16 44 44 H 1.08002 * 119.99372 * 359.97438 * 25 24 14 45 45 H 1.08003 * 120.00268 * 180.29383 * 26 25 24 46 46 H 1.08004 * 119.99416 * 179.77123 * 27 26 25 47 47 H 1.07994 * 120.00146 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.00114 * 0.02562 * 29 24 14 49 49 H 1.09000 * 109.58902 * 173.39795 * 30 11 10 50 50 H 1.09001 * 109.58558 * 293.82453 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 1 3.7208 -3.1493 0.8402 8 6 3.7543 -3.2936 -1.3099 9 6 4.2354 -4.7462 -1.2970 10 6 5.7632 -4.7730 -1.1864 11 7 6.1656 -3.9935 -0.0078 12 6 6.9632 -4.5351 0.9340 13 8 7.2888 -3.8812 1.9022 14 6 7.4505 -5.9532 0.7842 15 1 6.6555 -6.5680 0.3619 16 6 8.6463 -5.9793 -0.1326 17 1 9.3349 -5.1474 -0.1459 18 6 8.8611 -7.0652 -0.9548 19 7 9.8987 -7.0831 -1.7627 20 14 7.6786 -8.5108 -0.9208 21 1 6.5390 -8.2397 -1.8334 22 1 8.3859 -9.7393 -1.3635 23 1 7.1710 -8.7028 0.4614 24 6 7.8413 -6.4956 2.1348 25 6 8.9182 -5.9543 2.8118 26 6 9.2734 -6.4482 4.0531 27 6 8.5584 -7.4907 4.6125 28 6 7.4850 -8.0357 3.9331 29 6 7.1263 -7.5380 2.6943 30 6 5.6826 -2.6122 0.1244 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6959 -2.0072 -0.0005 35 1 4.0095 -0.6535 0.8889 36 1 4.0089 -0.6532 -0.8910 37 1 2.6694 -3.2712 -1.4133 38 1 4.2098 -2.7676 -2.1489 39 1 3.9288 -5.2393 -2.2195 40 1 3.7997 -5.2663 -0.4438 41 1 6.2021 -4.3339 -2.0823 42 1 6.1036 -5.8027 -1.0772 43 1 10.0500 -7.8472 -2.3408 44 1 9.4796 -5.1430 2.3725 45 1 10.1118 -6.0221 4.5841 46 1 8.8382 -7.8790 5.5807 47 1 6.9267 -8.8504 4.3700 48 1 6.2879 -7.9641 2.1633 49 1 5.9699 -2.2162 1.0984 50 1 6.1151 -1.9969 -0.6646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361940841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:53 Heat of formation + Delta-G solvation = -58.490568 kcal Electronic energy + Delta-G solvation = -30735.699148 eV Core-core repulsion = 26727.053416 eV Total energy + Delta-G solvation = -4008.645732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16738 -39.58986 -38.41668 -37.13937 -35.06329 -33.75360 -32.46690 -31.68402 -31.41266 -30.12675 -29.92351 -27.90168 -25.75420 -25.24231 -23.32970 -22.20660 -21.85790 -21.13837 -20.82746 -20.01139 -18.38002 -17.18034 -17.09305 -16.53575 -16.28066 -16.05724 -15.75427 -15.22528 -14.75651 -14.68184 -14.38649 -14.19613 -14.08415 -13.81638 -13.72510 -13.23469 -12.98420 -12.93670 -12.80228 -12.77005 -12.62676 -12.43473 -12.19269 -12.16917 -11.87956 -11.71025 -11.25035 -11.06270 -10.97837 -10.90876 -10.56883 -10.52125 -10.48419 -10.20856 -10.13109 -9.97530 -9.58250 -9.29294 -8.89380 -8.76254 -8.14845 -8.10456 -7.81154 -6.31557 -4.35307 2.14501 2.22002 2.42310 2.97434 3.07052 3.22004 3.24799 3.49655 3.60022 4.19363 4.49273 4.59045 4.62937 4.68268 4.78385 4.86017 5.01034 5.07843 5.12159 5.27879 5.33349 5.37474 5.47195 5.54068 5.54334 5.59728 5.63600 5.73687 5.77518 5.81686 5.89430 5.93534 5.96185 6.06728 6.12110 6.17989 6.21366 6.28165 6.34526 6.40763 6.43864 6.73429 6.86644 7.02640 7.17327 7.25887 7.26487 7.28093 7.60645 7.79967 7.98405 7.99479 8.24390 8.70219 8.99135 9.25149 10.79731 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003125 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.626297 B = 8957.881839 C =10024.115648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.550 6.550 4 N -0.727 5.727 5 C 0.124 3.876 6 C -0.113 4.113 7 H 0.080 0.920 8 C -0.112 4.112 9 C -0.139 4.139 10 C 0.111 3.889 11 N -0.611 5.611 12 C 0.540 3.460 13 O -0.555 6.555 14 C 0.036 3.964 15 H 0.058 0.942 16 C -0.506 4.506 17 H 0.081 0.919 18 C 0.086 3.914 19 N -0.882 5.882 20 Si 0.853 3.147 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.247 1.247 24 C -0.038 4.038 25 C -0.064 4.064 26 C -0.133 4.133 27 C -0.141 4.141 28 C -0.134 4.134 29 C -0.131 4.131 30 C 0.121 3.879 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.269 0.731 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.092 0.908 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.977 3.836 1.835 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.427 6.427 4 N -0.380 5.380 5 C 0.000 4.000 6 C -0.133 4.133 7 H 0.099 0.901 8 C -0.150 4.150 9 C -0.177 4.177 10 C -0.012 4.012 11 N -0.345 5.345 12 C 0.331 3.669 13 O -0.433 6.433 14 C 0.014 3.986 15 H 0.076 0.924 16 C -0.543 4.543 17 H 0.099 0.901 18 C -0.119 4.119 19 N -0.518 5.518 20 Si 0.679 3.321 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.171 1.171 24 C -0.039 4.039 25 C -0.083 4.083 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.153 4.153 29 C -0.150 4.150 30 C -0.003 4.003 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.139 0.861 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.110 0.890 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.220 4.824 2.199 17.065 hybrid contribution -0.698 -1.443 -0.288 1.629 sum -16.919 3.381 1.911 17.359 Atomic orbital electron populations 1.21846 0.91814 1.04144 1.05258 1.20809 0.90586 0.83519 0.75657 1.90737 1.70798 1.31455 1.49737 1.46159 1.07690 1.08714 1.75418 1.21345 0.79325 0.96583 1.02767 1.21787 0.97455 0.94799 0.99283 0.90130 1.21578 1.00267 0.96072 0.97042 1.21995 0.96820 0.96478 1.02396 1.21728 0.93029 0.98143 0.88308 1.47909 1.50406 1.12995 1.23173 1.21182 0.75419 0.90120 0.80157 1.90580 1.57333 1.64061 1.31309 1.18370 0.98339 0.89368 0.92522 0.92422 1.20453 1.07788 1.06302 1.19790 0.90061 1.24950 0.95166 0.97500 0.94284 1.69849 1.27650 1.30902 1.23378 0.87229 0.81730 0.83039 0.80146 1.19662 1.20997 1.17081 1.20137 0.94298 0.94665 0.94845 1.20920 0.95668 0.98386 0.93285 1.21061 1.00014 0.97645 0.96434 1.20875 0.97210 0.98205 0.99648 1.20869 0.98289 1.00447 0.95649 1.21026 1.00238 0.98134 0.95553 1.21324 0.91130 0.84415 1.03460 0.90638 0.88799 0.88797 0.76467 0.91099 0.91087 0.92175 0.91389 0.90767 0.91649 0.91326 0.88588 0.92102 0.86101 0.87122 0.87390 0.87372 0.87287 0.88974 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.39 36.00 0.37 -0.60 16 2 C 0.51 5.13 7.94 -10.99 -0.09 5.05 16 3 O -0.55 -8.25 17.10 5.56 0.10 -8.15 16 4 N -0.73 -6.25 5.27 -60.30 -0.32 -6.57 16 5 C 0.12 1.28 5.07 -4.04 -0.02 1.26 16 6 C -0.11 -1.21 2.37 -90.49 -0.21 -1.43 16 7 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 8 C -0.11 -1.07 5.06 -26.69 -0.13 -1.21 16 9 C -0.14 -1.57 6.08 -26.61 -0.16 -1.73 16 10 C 0.11 1.72 6.19 -3.71 -0.02 1.69 16 11 N -0.61 -10.57 2.97 -172.77 -0.51 -11.08 16 12 C 0.54 11.43 6.80 -10.99 -0.07 11.36 16 13 O -0.56 -12.96 14.50 5.56 0.08 -12.88 16 14 C 0.04 0.78 1.04 -94.08 -0.10 0.69 16 15 H 0.06 1.20 3.76 -51.92 -0.20 1.01 16 16 C -0.51 -12.89 7.85 -34.44 -0.27 -13.16 16 17 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 18 C 0.09 2.22 5.47 -17.82 -0.10 2.13 16 19 N -0.88 -24.77 13.96 55.43 0.77 -23.99 16 20 Si 0.85 18.81 26.15 -169.99 -4.45 14.36 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.25 -5.17 4.80 56.52 0.27 -4.90 16 24 C -0.04 -0.84 4.33 -104.63 -0.45 -1.30 16 25 C -0.06 -1.41 8.01 -39.58 -0.32 -1.73 16 26 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 27 C -0.14 -2.45 10.05 -39.58 -0.40 -2.85 16 28 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 29 C -0.13 -2.61 8.47 -39.58 -0.34 -2.94 16 30 C 0.12 1.72 5.72 -3.71 -0.02 1.70 16 31 H 0.07 0.25 7.91 -51.93 -0.41 -0.16 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.40 2.39 7.50 -40.82 -0.31 2.09 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.45 7.16 -51.93 -0.37 0.08 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.10 1.69 4.70 -51.93 -0.24 1.45 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.12 2.80 7.70 -52.49 -0.40 2.40 16 45 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 46 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 47 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 48 H 0.11 2.00 7.15 -52.48 -0.38 1.62 16 49 H 0.09 1.46 7.01 -51.93 -0.36 1.10 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -32.70 394.74 -9.36 -42.06 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.86 Total: 9.07 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.13 Total: -8.78 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.06 Total: -41.64 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.18 Total: -21.03 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.45 Total: 14.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.70 -9.36 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361940841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.432 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds