Wall clock time and date at job start Wed Apr 1 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 119.99989 * 2 1 4 4 N 1.34777 * 120.00184 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00233 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47275 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.49559 * 305.07123 * 6 5 4 8 8 C 1.53045 * 109.49460 * 65.16439 * 6 5 4 9 9 C 1.53033 * 109.53655 * 181.31943 * 8 6 5 10 10 C 1.53199 * 109.31017 * 298.63241 * 9 8 6 11 11 N 1.46921 * 108.77375 * 54.64006 * 10 9 8 12 12 C 1.34776 * 120.63165 * 126.41646 * 11 10 9 13 13 O 1.21282 * 120.00252 * 179.97438 * 12 11 10 14 14 C 1.50700 * 120.00117 * 359.97438 * 12 11 10 15 15 H 1.09010 * 109.47080 * 321.88299 * 14 12 11 16 16 C 1.50699 * 109.47135 * 81.88011 * 14 12 11 17 17 H 1.07998 * 120.00222 * 33.08087 * 16 14 12 18 18 C 1.37885 * 120.00004 * 213.08437 * 16 14 12 19 19 N 1.31517 * 119.99839 * 179.45017 * 18 16 14 20 20 Si 1.86801 * 119.99884 * 359.44667 * 18 16 14 21 21 H 1.48493 * 109.47157 * 85.53053 * 20 18 16 22 22 H 1.48502 * 109.46713 * 205.52915 * 20 18 16 23 23 H 1.48496 * 109.47111 * 325.52813 * 20 18 16 24 24 C 1.50698 * 109.47521 * 201.88184 * 14 12 11 25 25 C 1.38239 * 119.99940 * 293.98926 * 24 14 12 26 26 C 1.38231 * 120.00217 * 179.74270 * 25 24 14 27 27 C 1.38240 * 119.99542 * 0.52827 * 26 25 24 28 28 C 1.38233 * 120.00393 * 359.74193 * 27 26 25 29 29 C 1.38231 * 120.00331 * 114.25701 * 24 14 12 30 30 C 1.46927 * 118.73958 * 306.38610 * 11 10 9 31 31 H 1.09004 * 109.47253 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46942 * 299.99824 * 1 2 3 33 33 H 1.08992 * 109.47571 * 59.99871 * 1 2 3 34 34 H 0.97002 * 119.99617 * 359.97438 * 4 2 1 35 35 H 1.09003 * 109.46989 * 59.99848 * 5 4 2 36 36 H 1.08993 * 109.47468 * 300.00007 * 5 4 2 37 37 H 1.09005 * 109.45678 * 301.33944 * 8 6 5 38 38 H 1.08999 * 109.45556 * 61.29652 * 8 6 5 39 39 H 1.09000 * 109.50123 * 178.68487 * 9 8 6 40 40 H 1.09000 * 109.50277 * 58.58583 * 9 8 6 41 41 H 1.08999 * 109.58347 * 294.84502 * 10 9 8 42 42 H 1.09005 * 109.58328 * 174.42323 * 10 9 8 43 43 H 0.96994 * 119.99610 * 179.97438 * 19 18 16 44 44 H 1.08002 * 119.99372 * 359.97438 * 25 24 14 45 45 H 1.08003 * 120.00268 * 180.29383 * 26 25 24 46 46 H 1.08004 * 119.99416 * 179.77123 * 27 26 25 47 47 H 1.07994 * 120.00146 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.00114 * 0.02562 * 29 24 14 49 49 H 1.09000 * 109.58902 * 173.39795 * 30 11 10 50 50 H 1.09001 * 109.58558 * 293.82453 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 1 3.7208 -3.1493 0.8402 8 6 3.7543 -3.2936 -1.3099 9 6 4.2354 -4.7462 -1.2970 10 6 5.7632 -4.7730 -1.1864 11 7 6.1656 -3.9935 -0.0078 12 6 6.9632 -4.5351 0.9340 13 8 7.2888 -3.8812 1.9022 14 6 7.4505 -5.9532 0.7842 15 1 6.6555 -6.5680 0.3619 16 6 8.6463 -5.9793 -0.1326 17 1 9.3349 -5.1474 -0.1459 18 6 8.8611 -7.0652 -0.9548 19 7 9.8987 -7.0831 -1.7627 20 14 7.6786 -8.5108 -0.9208 21 1 6.5390 -8.2397 -1.8334 22 1 8.3859 -9.7393 -1.3635 23 1 7.1710 -8.7028 0.4614 24 6 7.8413 -6.4956 2.1348 25 6 8.9182 -5.9543 2.8118 26 6 9.2734 -6.4482 4.0531 27 6 8.5584 -7.4907 4.6125 28 6 7.4850 -8.0357 3.9331 29 6 7.1263 -7.5380 2.6943 30 6 5.6826 -2.6122 0.1244 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6959 -2.0072 -0.0005 35 1 4.0095 -0.6535 0.8889 36 1 4.0089 -0.6532 -0.8910 37 1 2.6694 -3.2712 -1.4133 38 1 4.2098 -2.7676 -2.1489 39 1 3.9288 -5.2393 -2.2195 40 1 3.7997 -5.2663 -0.4438 41 1 6.2021 -4.3339 -2.0823 42 1 6.1036 -5.8027 -1.0772 43 1 10.0500 -7.8472 -2.3408 44 1 9.4796 -5.1430 2.3725 45 1 10.1118 -6.0221 4.5841 46 1 8.8382 -7.8790 5.5807 47 1 6.9267 -8.8504 4.3700 48 1 6.2879 -7.9641 2.1633 49 1 5.9699 -2.2162 1.0984 50 1 6.1151 -1.9969 -0.6646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361940841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:52 Heat of formation + Delta-G solvation = -80.013088 kcal Electronic energy + Delta-G solvation = -30736.632434 eV Core-core repulsion = 26727.053416 eV Total energy + Delta-G solvation = -4009.579018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47232 -40.63777 -39.77807 -38.48431 -36.18081 -35.51353 -33.70505 -33.25476 -32.57481 -31.62525 -30.61909 -29.48616 -26.73118 -26.67378 -25.00705 -23.38023 -23.24444 -22.51972 -21.64229 -21.16360 -19.80498 -19.09693 -18.21710 -17.78228 -17.48349 -17.26225 -16.66464 -16.57385 -16.40924 -15.92177 -15.59876 -15.49707 -15.25494 -15.15800 -14.78303 -14.61831 -14.43012 -14.22174 -14.04222 -13.83796 -13.78019 -13.59787 -13.40057 -13.27298 -13.02149 -12.90471 -12.86883 -12.65912 -12.15769 -12.11950 -11.93643 -11.83315 -11.67295 -11.60924 -11.46399 -11.42912 -11.00790 -10.77381 -10.51542 -10.13082 -9.61733 -9.55086 -9.36210 -8.33846 -6.43413 0.63673 0.70763 1.32886 1.41878 1.50830 1.65566 1.82572 2.05488 2.32890 2.40857 2.97870 3.14963 3.59252 3.72138 3.82876 3.98318 4.03985 4.07428 4.16417 4.22424 4.25310 4.33200 4.35270 4.41378 4.48109 4.48948 4.52544 4.60010 4.69030 4.71860 4.78778 4.82507 4.90209 4.92187 4.95904 5.07656 5.11169 5.13176 5.17058 5.22162 5.33254 5.38008 5.40932 5.47377 5.67248 5.71094 5.75971 5.96204 6.18892 6.29900 6.49486 6.58845 6.60556 7.21120 7.27626 7.36076 8.81520 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003125 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.626297 B = 8957.881839 C =10024.115648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.607 6.607 4 N -0.713 5.713 5 C 0.131 3.869 6 C -0.095 4.095 7 H 0.084 0.916 8 C -0.107 4.107 9 C -0.129 4.129 10 C 0.102 3.898 11 N -0.607 5.607 12 C 0.530 3.470 13 O -0.588 6.588 14 C 0.042 3.958 15 H 0.075 0.925 16 C -0.500 4.500 17 H 0.022 0.978 18 C 0.034 3.966 19 N -0.936 5.936 20 Si 0.914 3.086 21 H -0.240 1.240 22 H -0.293 1.293 23 H -0.226 1.226 24 C -0.067 4.067 25 C -0.098 4.098 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.127 4.127 29 C -0.143 4.143 30 C 0.115 3.885 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.418 0.582 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.270 0.730 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.128 0.872 49 H 0.070 0.930 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.471 1.299 2.697 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.290 3.710 3 O -0.489 6.489 4 N -0.367 5.367 5 C 0.006 3.994 6 C -0.114 4.114 7 H 0.103 0.897 8 C -0.144 4.144 9 C -0.167 4.167 10 C -0.021 4.021 11 N -0.339 5.339 12 C 0.321 3.679 13 O -0.469 6.469 14 C 0.021 3.979 15 H 0.092 0.908 16 C -0.537 4.537 17 H 0.040 0.960 18 C -0.166 4.166 19 N -0.574 5.574 20 Si 0.736 3.264 21 H -0.164 1.164 22 H -0.220 1.220 23 H -0.148 1.148 24 C -0.068 4.068 25 C -0.117 4.117 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.145 4.145 29 C -0.161 4.161 30 C -0.008 4.008 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.256 0.744 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.148 0.852 46 H 0.167 0.833 47 H 0.168 0.832 48 H 0.146 0.854 49 H 0.088 0.912 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.777 2.277 3.042 21.122 hybrid contribution 0.823 -0.553 -0.491 1.106 sum -19.954 1.724 2.551 20.191 Atomic orbital electron populations 1.21868 0.87897 1.06506 1.05876 1.21677 0.92427 0.82721 0.74160 1.90717 1.72278 1.33499 1.52415 1.46038 1.06734 1.09430 1.74462 1.21105 0.80728 0.95888 1.01674 1.21578 0.94067 0.95239 1.00562 0.89732 1.21587 1.02416 0.94625 0.95795 1.21958 0.92792 0.97940 1.03983 1.21919 0.96616 0.96506 0.87035 1.47970 1.49137 1.14116 1.22651 1.21145 0.76017 0.90052 0.80717 1.90547 1.58745 1.64636 1.32994 1.18234 0.96953 0.90403 0.92312 0.90764 1.20338 1.08049 1.04584 1.20769 0.95956 1.25799 0.96911 1.00462 0.93441 1.70016 1.30315 1.32117 1.24974 0.86252 0.80121 0.78194 0.81853 1.16360 1.21952 1.14847 1.20191 0.95270 0.96189 0.95176 1.20836 0.96716 0.98826 0.95304 1.21343 1.00867 0.98220 0.95293 1.21349 0.96201 0.96681 1.00946 1.21373 0.97997 1.00645 0.94501 1.21297 1.00572 0.97377 0.96813 1.21485 0.94228 0.82711 1.02404 0.87416 0.88251 0.87974 0.74433 0.92931 0.91747 0.88583 0.91391 0.88301 0.90897 0.91777 0.90661 0.92094 0.89857 0.85216 0.83269 0.83183 0.85440 0.91191 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.39 71.23 0.74 -0.60 16 2 C 0.50 9.31 7.94 87.66 0.70 10.00 16 3 O -0.61 -18.27 17.10 -3.03 -0.05 -18.32 16 4 N -0.71 -10.57 5.27 -463.07 -2.44 -13.01 16 5 C 0.13 2.61 5.07 86.38 0.44 3.05 16 6 C -0.09 -1.90 2.37 -10.71 -0.03 -1.92 16 7 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 8 C -0.11 -1.69 5.06 30.62 0.15 -1.54 16 9 C -0.13 -2.50 6.08 30.67 0.19 -2.31 16 10 C 0.10 3.09 6.19 86.37 0.53 3.63 16 11 N -0.61 -21.63 2.97 -818.90 -2.43 -24.07 16 12 C 0.53 23.67 6.80 87.66 0.60 24.27 16 13 O -0.59 -29.48 14.50 -3.04 -0.04 -29.52 16 14 C 0.04 1.93 1.04 -13.03 -0.01 1.92 16 15 H 0.07 3.06 3.76 -2.38 -0.01 3.05 16 16 C -0.50 -27.24 7.85 25.60 0.20 -27.04 16 17 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 18 C 0.03 1.81 5.47 84.66 0.46 2.27 16 19 N -0.94 -55.41 13.96 21.45 0.30 -55.11 16 20 Si 0.91 38.45 26.15 68.60 1.79 40.24 16 21 H -0.24 -8.85 7.11 99.48 0.71 -8.14 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.23 -8.64 4.80 99.48 0.48 -8.16 16 24 C -0.07 -3.01 4.33 -19.87 -0.09 -3.09 16 25 C -0.10 -4.53 8.01 22.27 0.18 -4.36 16 26 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 27 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 28 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 29 C -0.14 -5.33 8.47 22.27 0.19 -5.14 16 30 C 0.11 3.40 5.72 86.36 0.49 3.89 16 31 H 0.11 0.19 7.91 -2.39 -0.02 0.18 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.42 3.29 7.50 -92.71 -0.70 2.60 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 0.93 7.16 -2.38 -0.02 0.91 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.08 2.61 4.70 -2.38 -0.01 2.59 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.08 4.32 7.70 -2.91 -0.02 4.30 16 45 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 46 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 47 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 48 H 0.13 4.20 7.15 -2.91 -0.02 4.18 16 49 H 0.07 2.39 7.01 -2.39 -0.02 2.37 16 50 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -80.05 394.74 2.56 -77.49 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.02 Total: 32.04 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.42 Total: -9.75 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -4.58 Total: -92.19 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -0.10 Total: -47.84 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.79 Total: 40.24 kcal Total: -80.05 2.56 -77.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361940841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.523 kcal (2) G-P(sol) polarization free energy of solvation -80.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds