Wall clock time and date at job start Wed Apr 1 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 120.00374 * 2 1 4 4 N 1.34782 * 119.99710 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00069 * 5.35906 * 4 2 1 6 6 C 1.46500 * 119.99647 * 185.36500 * 4 2 1 7 7 C 1.53049 * 109.45596 * 239.99781 * 6 4 2 8 8 C 1.53192 * 109.30825 * 178.61802 * 7 6 4 9 9 N 1.46925 * 108.77933 * 54.63369 * 8 7 6 10 10 C 1.34775 * 120.63031 * 126.36444 * 9 8 7 11 11 O 1.21280 * 120.00156 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00037 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.46470 * 299.99937 * 12 10 9 14 14 C 1.50698 * 109.47111 * 60.00185 * 12 10 9 15 15 H 1.07998 * 120.00013 * 34.47341 * 14 12 10 16 16 C 1.37871 * 119.99839 * 214.47769 * 14 12 10 17 17 N 1.31518 * 120.00192 * 4.81780 * 16 14 12 18 18 Si 1.86802 * 120.00105 * 184.81859 * 16 14 12 19 19 H 1.48496 * 109.46980 * 269.99974 * 18 16 14 20 20 H 1.48500 * 109.46850 * 29.99811 * 18 16 14 21 21 H 1.48499 * 109.47062 * 149.99673 * 18 16 14 22 22 C 1.50701 * 109.47021 * 180.02562 * 12 10 9 23 23 C 1.38231 * 119.99845 * 294.55364 * 22 12 10 24 24 C 1.38242 * 120.00140 * 179.81210 * 23 22 12 25 25 C 1.38237 * 119.99322 * 0.39787 * 24 23 22 26 26 C 1.38232 * 120.00505 * 359.85543 * 25 24 23 27 27 C 1.38234 * 119.99982 * 114.82758 * 22 12 10 28 28 C 1.46921 * 118.73787 * 306.64204 * 9 8 7 29 29 C 1.52764 * 109.00941 * 53.31013 * 28 9 8 30 30 H 1.08997 * 109.47519 * 274.79774 * 1 2 3 31 31 H 1.09008 * 109.46741 * 34.79702 * 1 2 3 32 32 H 1.09000 * 109.47536 * 154.79229 * 1 2 3 33 33 H 1.09001 * 109.47261 * 275.52241 * 5 4 2 34 34 H 1.08999 * 109.46947 * 35.52353 * 5 4 2 35 35 H 1.09001 * 109.47320 * 155.52145 * 5 4 2 36 36 H 1.08999 * 109.46216 * 359.96658 * 6 4 2 37 37 H 1.08997 * 109.49626 * 58.66045 * 7 6 4 38 38 H 1.09007 * 109.52121 * 298.57951 * 7 6 4 39 39 H 1.08997 * 109.58634 * 294.84013 * 8 7 6 40 40 H 1.09001 * 109.69687 * 174.49244 * 8 7 6 41 41 H 0.96997 * 119.99720 * 354.87517 * 17 16 14 42 42 H 1.08002 * 120.00274 * 359.97438 * 23 22 12 43 43 H 1.07993 * 120.00147 * 180.23027 * 24 23 22 44 44 H 1.08003 * 119.99266 * 179.83373 * 25 24 23 45 45 H 1.07991 * 119.99910 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00226 * 359.97438 * 27 22 12 47 47 H 1.08999 * 109.58342 * 173.14488 * 28 9 8 48 48 H 1.08996 * 109.58648 * 293.56813 * 28 9 8 49 49 H 1.09001 * 109.56484 * 185.55506 * 29 28 9 50 50 H 1.08996 * 109.36282 * 65.49845 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4531 -2.4331 -0.1196 6 6 3.6410 -1.1701 0.1181 7 6 4.2517 -1.8329 -1.1189 8 6 5.7793 -1.8031 -1.0074 9 7 6.1728 -2.4226 0.2654 10 6 7.0652 -3.4322 0.2907 11 8 7.5519 -3.8375 -0.7436 12 6 7.4583 -4.0577 1.6043 13 1 7.9006 -3.2990 2.2499 14 6 6.2365 -4.6349 2.2714 15 1 5.4487 -5.0684 1.6732 16 6 6.1244 -4.6095 3.6453 17 7 7.0371 -3.9981 4.3684 18 14 4.6762 -5.4436 4.4799 19 1 3.5599 -4.4743 4.6192 20 1 4.2298 -6.5980 3.6594 21 1 5.0877 -5.9214 5.8243 22 6 8.4621 -5.1544 1.3580 23 6 8.0911 -6.2861 0.6563 24 6 9.0130 -7.2904 0.4270 25 6 10.3036 -7.1665 0.9065 26 6 10.6732 -6.0371 1.6127 27 6 9.7523 -5.0311 1.8386 28 6 5.5704 -1.9245 1.5094 29 6 4.0493 -1.9493 1.3704 30 1 -0.3634 0.0859 1.0240 31 1 -0.3633 0.8440 -0.5865 32 1 -0.3634 -0.9298 -0.4377 33 1 1.1044 -2.7458 0.8647 34 1 0.5982 -2.2998 -0.7825 35 1 2.1152 -3.1958 -0.5296 36 1 4.0011 -0.1442 0.1954 37 1 3.9414 -1.2912 -2.0124 38 1 3.9117 -2.8666 -1.1836 39 1 6.1275 -0.7706 -1.0345 40 1 6.2190 -2.3588 -1.8357 41 1 7.8267 -3.6297 3.9422 42 1 7.0817 -6.3846 0.2850 43 1 8.7241 -8.1729 -0.1244 44 1 11.0230 -7.9523 0.7297 45 1 11.6813 -5.9406 1.9876 46 1 10.0411 -4.1487 2.3903 47 1 5.8704 -2.5619 2.3413 48 1 5.9013 -0.9022 1.6919 49 1 3.5950 -1.4904 2.2486 50 1 3.7112 -2.9818 1.2828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362163308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:54 Heat of formation + Delta-G solvation = -45.468809 kcal Electronic energy + Delta-G solvation = -31545.021114 eV Core-core repulsion = 27536.940048 eV Total energy + Delta-G solvation = -4008.081066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.31578 -39.45359 -38.17653 -36.90267 -35.05660 -34.25510 -31.89996 -31.05758 -30.70743 -30.08401 -29.37383 -27.32370 -27.00310 -24.58632 -23.54919 -22.95399 -21.71643 -21.21763 -20.27044 -19.21636 -18.53221 -17.36838 -17.09210 -16.28681 -16.02223 -15.73617 -15.68497 -15.22070 -14.60563 -14.33299 -14.01994 -13.92949 -13.68507 -13.67469 -13.46887 -13.29484 -13.04759 -12.92658 -12.81386 -12.52064 -12.34665 -12.29217 -12.07491 -11.92605 -11.86320 -11.62213 -11.51180 -11.02093 -11.00039 -10.82089 -10.60190 -10.38416 -10.30186 -10.27441 -10.12973 -9.82761 -9.10448 -8.91075 -8.69622 -8.49694 -8.09467 -8.03487 -7.73201 -6.66766 -4.39867 2.21921 2.26655 2.55769 2.94383 3.23923 3.30945 3.45368 3.55340 3.75144 4.28529 4.48912 4.67750 4.87098 4.88726 5.00174 5.06029 5.08644 5.17117 5.23914 5.37573 5.43835 5.48225 5.56940 5.60636 5.63625 5.68407 5.70901 5.76226 5.84200 5.90663 5.99420 6.02785 6.06554 6.20730 6.29087 6.34939 6.41062 6.50332 6.54809 6.59134 6.70174 6.80361 6.91405 7.22147 7.24421 7.31158 7.34964 7.50657 7.74835 7.87661 8.08379 8.10965 8.15027 8.50014 9.08014 9.25725 10.69863 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003669 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.354915 B = 7630.032899 C = 8767.969087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.510 3.490 3 O -0.551 6.551 4 N -0.610 5.610 5 C 0.074 3.926 6 C 0.137 3.863 7 C -0.137 4.137 8 C 0.114 3.886 9 N -0.608 5.608 10 C 0.534 3.466 11 O -0.567 6.567 12 C 0.039 3.961 13 H 0.071 0.929 14 C -0.582 4.582 15 H 0.058 0.942 16 C 0.033 3.967 17 N -0.893 5.893 18 Si 1.065 2.935 19 H -0.284 1.284 20 H -0.286 1.286 21 H -0.282 1.282 22 C -0.020 4.020 23 C -0.079 4.079 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.128 4.128 27 C -0.128 4.128 28 C 0.101 3.899 29 C -0.133 4.133 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.141 0.859 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 2.052 -6.262 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.299 3.701 3 O -0.429 6.429 4 N -0.343 5.343 5 C -0.069 4.069 6 C 0.034 3.966 7 C -0.176 4.176 8 C -0.010 4.010 9 N -0.341 5.341 10 C 0.325 3.675 11 O -0.446 6.446 12 C 0.018 3.982 13 H 0.088 0.912 14 C -0.619 4.619 15 H 0.077 0.923 16 C -0.174 4.174 17 N -0.528 5.528 18 Si 0.892 3.108 19 H -0.210 1.210 20 H -0.211 1.211 21 H -0.207 1.207 22 C -0.021 4.021 23 C -0.097 4.097 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.022 4.022 29 C -0.172 4.172 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.158 0.842 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.232 2.144 -5.321 10.869 hybrid contribution 0.536 0.080 -1.425 1.525 sum -8.697 2.225 -6.746 11.229 Atomic orbital electron populations 1.21984 0.92087 1.04604 1.04848 1.20803 0.90567 0.83236 0.75535 1.90702 1.70717 1.31190 1.50311 1.48033 1.07387 1.06375 1.72500 1.21847 0.97105 0.86089 1.01876 1.21216 0.78344 1.01608 0.95395 1.22225 0.96240 1.01477 0.97655 1.21385 0.93147 0.97963 0.88536 1.47953 1.43692 1.35804 1.06654 1.21400 0.76678 0.77296 0.92111 1.90573 1.55426 1.62527 1.36045 1.18231 0.95584 0.93388 0.90999 0.91163 1.21511 1.02897 1.43800 0.93721 0.92344 1.25830 1.02589 0.94918 0.94091 1.70828 1.10090 1.32406 1.39434 0.83581 0.74594 0.76382 0.76236 1.21036 1.21146 1.20722 1.20085 0.92822 0.96127 0.93086 1.20785 0.98675 0.92973 0.97267 1.20991 0.93985 0.98859 1.01197 1.20833 0.96337 0.98099 1.01143 1.20894 0.98741 0.94747 1.00268 1.20982 0.93423 0.98918 1.01332 1.22004 0.91125 0.99903 0.89188 1.22089 0.97328 1.01141 0.96631 0.88802 0.89236 0.90007 0.92189 0.91202 0.90371 0.88322 0.91224 0.91206 0.92300 0.89192 0.91493 0.87046 0.87393 0.87487 0.87359 0.87254 0.84151 0.93407 0.91043 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.89 36.01 0.36 -1.06 16 2 C 0.51 6.53 7.77 -10.98 -0.09 6.45 16 3 O -0.55 -9.41 16.44 5.56 0.09 -9.32 16 4 N -0.61 -7.39 2.76 -173.88 -0.48 -7.87 16 5 C 0.07 0.66 9.07 59.85 0.54 1.21 16 6 C 0.14 1.93 2.47 -67.88 -0.17 1.76 16 7 C -0.14 -1.87 5.32 -26.61 -0.14 -2.01 16 8 C 0.11 1.81 6.43 -3.71 -0.02 1.78 16 9 N -0.61 -11.37 2.98 -173.04 -0.52 -11.88 16 10 C 0.53 11.73 6.98 -10.98 -0.08 11.65 16 11 O -0.57 -13.64 14.80 5.56 0.08 -13.56 16 12 C 0.04 0.89 1.51 -94.07 -0.14 0.75 16 13 H 0.07 1.66 5.75 -51.93 -0.30 1.37 16 14 C -0.58 -13.60 5.44 -34.44 -0.19 -13.79 16 15 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 16 C 0.03 0.79 4.74 -17.82 -0.08 0.70 16 17 N -0.89 -23.01 13.63 55.43 0.76 -22.25 16 18 Si 1.06 22.12 29.91 -169.99 -5.08 17.03 16 19 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.29 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.02 -0.46 4.31 -104.63 -0.45 -0.91 16 23 C -0.08 -1.73 8.28 -39.58 -0.33 -2.06 16 24 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 25 C -0.15 -2.64 10.05 -39.58 -0.40 -3.03 16 26 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 27 C -0.13 -2.71 9.67 -39.58 -0.38 -3.09 16 28 C 0.10 1.80 5.86 -3.93 -0.02 1.77 16 29 C -0.13 -2.06 5.32 -26.83 -0.14 -2.20 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 0.47 5.76 -51.93 -0.30 0.18 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.45 6.19 -51.93 -0.32 0.13 16 35 H 0.08 0.74 6.47 -51.93 -0.34 0.41 16 36 H 0.10 1.56 6.91 -51.93 -0.36 1.21 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.97 6.72 -51.93 -0.35 0.62 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.53 7.00 -51.93 -0.36 1.17 16 41 H 0.27 7.02 6.46 -40.82 -0.26 6.75 16 42 H 0.11 2.49 7.91 -52.49 -0.42 2.07 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 46 H 0.11 2.19 7.95 -52.49 -0.42 1.77 16 47 H 0.14 2.92 4.01 -51.93 -0.21 2.71 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.07 1.21 7.72 -51.93 -0.40 0.81 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -30.19 392.90 -9.23 -39.42 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.47 Total: 10.33 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.53 Total: -7.82 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.24 Total: -42.01 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.08 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.19 -9.23 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.049 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds