Wall clock time and date at job start Wed Apr 1 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 120.00374 * 2 1 4 4 N 1.34782 * 119.99710 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00069 * 5.35906 * 4 2 1 6 6 C 1.46500 * 119.99647 * 185.36500 * 4 2 1 7 7 C 1.53049 * 109.45596 * 239.99781 * 6 4 2 8 8 C 1.53192 * 109.30825 * 178.61802 * 7 6 4 9 9 N 1.46925 * 108.77933 * 54.63369 * 8 7 6 10 10 C 1.34775 * 120.63031 * 126.36444 * 9 8 7 11 11 O 1.21280 * 120.00156 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00037 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.46470 * 299.99937 * 12 10 9 14 14 C 1.50698 * 109.47111 * 60.00185 * 12 10 9 15 15 H 1.07998 * 120.00013 * 34.47341 * 14 12 10 16 16 C 1.37871 * 119.99839 * 214.47769 * 14 12 10 17 17 N 1.31518 * 120.00192 * 4.81780 * 16 14 12 18 18 Si 1.86802 * 120.00105 * 184.81859 * 16 14 12 19 19 H 1.48496 * 109.46980 * 269.99974 * 18 16 14 20 20 H 1.48500 * 109.46850 * 29.99811 * 18 16 14 21 21 H 1.48499 * 109.47062 * 149.99673 * 18 16 14 22 22 C 1.50701 * 109.47021 * 180.02562 * 12 10 9 23 23 C 1.38231 * 119.99845 * 294.55364 * 22 12 10 24 24 C 1.38242 * 120.00140 * 179.81210 * 23 22 12 25 25 C 1.38237 * 119.99322 * 0.39787 * 24 23 22 26 26 C 1.38232 * 120.00505 * 359.85543 * 25 24 23 27 27 C 1.38234 * 119.99982 * 114.82758 * 22 12 10 28 28 C 1.46921 * 118.73787 * 306.64204 * 9 8 7 29 29 C 1.52764 * 109.00941 * 53.31013 * 28 9 8 30 30 H 1.08997 * 109.47519 * 274.79774 * 1 2 3 31 31 H 1.09008 * 109.46741 * 34.79702 * 1 2 3 32 32 H 1.09000 * 109.47536 * 154.79229 * 1 2 3 33 33 H 1.09001 * 109.47261 * 275.52241 * 5 4 2 34 34 H 1.08999 * 109.46947 * 35.52353 * 5 4 2 35 35 H 1.09001 * 109.47320 * 155.52145 * 5 4 2 36 36 H 1.08999 * 109.46216 * 359.96658 * 6 4 2 37 37 H 1.08997 * 109.49626 * 58.66045 * 7 6 4 38 38 H 1.09007 * 109.52121 * 298.57951 * 7 6 4 39 39 H 1.08997 * 109.58634 * 294.84013 * 8 7 6 40 40 H 1.09001 * 109.69687 * 174.49244 * 8 7 6 41 41 H 0.96997 * 119.99720 * 354.87517 * 17 16 14 42 42 H 1.08002 * 120.00274 * 359.97438 * 23 22 12 43 43 H 1.07993 * 120.00147 * 180.23027 * 24 23 22 44 44 H 1.08003 * 119.99266 * 179.83373 * 25 24 23 45 45 H 1.07991 * 119.99910 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00226 * 359.97438 * 27 22 12 47 47 H 1.08999 * 109.58342 * 173.14488 * 28 9 8 48 48 H 1.08996 * 109.58648 * 293.56813 * 28 9 8 49 49 H 1.09001 * 109.56484 * 185.55506 * 29 28 9 50 50 H 1.08996 * 109.36282 * 65.49845 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4531 -2.4331 -0.1196 6 6 3.6410 -1.1701 0.1181 7 6 4.2517 -1.8329 -1.1189 8 6 5.7793 -1.8031 -1.0074 9 7 6.1728 -2.4226 0.2654 10 6 7.0652 -3.4322 0.2907 11 8 7.5519 -3.8375 -0.7436 12 6 7.4583 -4.0577 1.6043 13 1 7.9006 -3.2990 2.2499 14 6 6.2365 -4.6349 2.2714 15 1 5.4487 -5.0684 1.6732 16 6 6.1244 -4.6095 3.6453 17 7 7.0371 -3.9981 4.3684 18 14 4.6762 -5.4436 4.4799 19 1 3.5599 -4.4743 4.6192 20 1 4.2298 -6.5980 3.6594 21 1 5.0877 -5.9214 5.8243 22 6 8.4621 -5.1544 1.3580 23 6 8.0911 -6.2861 0.6563 24 6 9.0130 -7.2904 0.4270 25 6 10.3036 -7.1665 0.9065 26 6 10.6732 -6.0371 1.6127 27 6 9.7523 -5.0311 1.8386 28 6 5.5704 -1.9245 1.5094 29 6 4.0493 -1.9493 1.3704 30 1 -0.3634 0.0859 1.0240 31 1 -0.3633 0.8440 -0.5865 32 1 -0.3634 -0.9298 -0.4377 33 1 1.1044 -2.7458 0.8647 34 1 0.5982 -2.2998 -0.7825 35 1 2.1152 -3.1958 -0.5296 36 1 4.0011 -0.1442 0.1954 37 1 3.9414 -1.2912 -2.0124 38 1 3.9117 -2.8666 -1.1836 39 1 6.1275 -0.7706 -1.0345 40 1 6.2190 -2.3588 -1.8357 41 1 7.8267 -3.6297 3.9422 42 1 7.0817 -6.3846 0.2850 43 1 8.7241 -8.1729 -0.1244 44 1 11.0230 -7.9523 0.7297 45 1 11.6813 -5.9406 1.9876 46 1 10.0411 -4.1487 2.3903 47 1 5.8704 -2.5619 2.3413 48 1 5.9013 -0.9022 1.6919 49 1 3.5950 -1.4904 2.2486 50 1 3.7112 -2.9818 1.2828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362163308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:52 Heat of formation + Delta-G solvation = -61.464196 kcal Electronic energy + Delta-G solvation = -31545.714726 eV Core-core repulsion = 27536.940048 eV Total energy + Delta-G solvation = -4008.774678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61901 -40.83615 -39.66112 -38.31838 -36.36715 -35.95368 -33.18077 -32.70217 -32.09158 -31.64062 -30.26270 -28.88574 -27.92775 -26.12625 -25.16259 -24.31650 -23.28703 -22.67733 -21.67703 -20.30152 -20.04027 -19.03265 -18.11588 -17.76446 -17.57599 -17.01675 -16.81033 -16.54368 -16.24035 -15.82220 -15.62334 -15.51245 -14.92991 -14.92058 -14.67120 -14.51861 -14.44846 -14.10411 -14.07022 -13.88174 -13.75889 -13.65148 -13.26151 -13.15039 -13.04931 -12.87008 -12.70764 -12.68006 -12.52545 -12.24854 -11.99531 -11.94106 -11.84775 -11.70642 -11.59537 -10.91171 -10.86673 -10.71227 -10.35561 -9.67399 -9.66106 -9.59298 -9.34504 -8.59800 -6.31424 0.64344 0.70097 1.55663 1.59681 1.63325 1.79367 1.80151 2.01636 2.21508 2.55839 3.07133 3.22604 3.53666 3.75931 3.85870 3.97747 4.07788 4.11495 4.17263 4.21390 4.22531 4.29508 4.33929 4.38045 4.39760 4.43492 4.58339 4.61570 4.64679 4.72038 4.75624 4.80144 4.83466 4.86830 4.89698 4.94720 5.01955 5.12259 5.14218 5.24638 5.27583 5.32031 5.50203 5.68013 5.70390 5.75193 5.77214 6.04090 6.16491 6.29611 6.41638 6.46220 6.59395 7.14731 7.35135 7.40869 8.77137 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003669 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.354915 B = 7630.032899 C = 8767.969087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.501 3.499 3 O -0.602 6.602 4 N -0.609 5.609 5 C 0.067 3.933 6 C 0.145 3.855 7 C -0.123 4.123 8 C 0.110 3.890 9 N -0.602 5.602 10 C 0.529 3.471 11 O -0.593 6.593 12 C 0.042 3.958 13 H 0.052 0.948 14 C -0.567 4.567 15 H 0.047 0.953 16 C -0.001 4.001 17 N -0.919 5.919 18 Si 1.099 2.901 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.291 1.291 22 C -0.049 4.049 23 C -0.104 4.104 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.152 4.152 28 C 0.100 3.900 29 C -0.121 4.121 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.262 0.738 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.149 0.851 45 H 0.141 0.859 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.055 0.945 49 H 0.074 0.926 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 0.845 -7.048 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.293 3.707 3 O -0.484 6.484 4 N -0.341 5.341 5 C -0.074 4.074 6 C 0.041 3.959 7 C -0.162 4.162 8 C -0.012 4.012 9 N -0.334 5.334 10 C 0.320 3.680 11 O -0.474 6.474 12 C 0.020 3.980 13 H 0.069 0.931 14 C -0.604 4.604 15 H 0.066 0.934 16 C -0.203 4.203 17 N -0.555 5.555 18 Si 0.922 3.078 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.217 1.217 22 C -0.050 4.050 23 C -0.123 4.123 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.171 4.171 28 C -0.023 4.023 29 C -0.160 4.160 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.156 0.844 44 H 0.167 0.833 45 H 0.159 0.841 46 H 0.125 0.875 47 H 0.131 0.869 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.816 0.938 -6.122 12.464 hybrid contribution 1.091 0.450 -1.232 1.706 sum -9.725 1.388 -7.354 12.271 Atomic orbital electron populations 1.22005 0.88000 1.06415 1.06089 1.21705 0.92472 0.82368 0.74187 1.90680 1.72083 1.32971 1.52690 1.48104 1.06435 1.07672 1.71898 1.22100 0.97728 0.84309 1.03286 1.20911 0.80257 1.00133 0.94615 1.22098 0.94126 1.01760 0.98232 1.21560 0.94973 0.98059 0.86648 1.47970 1.42614 1.34777 1.08070 1.21299 0.77229 0.77999 0.91470 1.90537 1.56661 1.63711 1.36536 1.18143 0.95585 0.93237 0.91008 0.93064 1.21441 1.02692 1.42758 0.93558 0.93419 1.26813 1.03847 0.94797 0.94846 1.70911 1.10614 1.34381 1.39609 0.83151 0.73266 0.76417 0.75007 1.18726 1.20143 1.21738 1.20189 0.93675 0.96506 0.94671 1.20810 0.98841 0.94061 0.98548 1.21368 0.94056 0.98908 1.00705 1.21317 0.96508 0.98583 0.99396 1.21309 0.99670 0.94043 0.99435 1.21165 0.93697 1.00088 1.02108 1.21935 0.92936 0.99438 0.87954 1.21946 0.95222 1.01134 0.97722 0.87462 0.88689 0.87147 0.91257 0.87873 0.90970 0.90091 0.89442 0.91121 0.91061 0.90241 0.92674 0.88658 0.84401 0.83287 0.84088 0.87549 0.86906 0.92667 0.90724 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.89 71.24 0.70 -1.44 16 2 C 0.50 11.99 7.77 87.66 0.68 12.67 16 3 O -0.60 -20.39 16.44 -3.04 -0.05 -20.44 16 4 N -0.61 -13.65 2.76 -822.42 -2.27 -15.92 16 5 C 0.07 1.01 9.07 127.77 1.16 2.17 16 6 C 0.14 3.99 2.47 45.02 0.11 4.10 16 7 C -0.12 -3.26 5.32 30.67 0.16 -3.10 16 8 C 0.11 3.55 6.43 86.36 0.56 4.11 16 9 N -0.60 -23.27 2.98 -819.75 -2.44 -25.71 16 10 C 0.53 24.28 6.98 87.66 0.61 24.89 16 11 O -0.59 -29.63 14.80 -3.03 -0.04 -29.67 16 12 C 0.04 1.99 1.51 -13.03 -0.02 1.97 16 13 H 0.05 2.61 5.75 -2.39 -0.01 2.60 16 14 C -0.57 -27.47 5.44 25.60 0.14 -27.33 16 15 H 0.05 2.37 7.82 -2.91 -0.02 2.35 16 16 C 0.00 -0.07 4.74 84.65 0.40 0.33 16 17 N -0.92 -49.05 13.63 21.45 0.29 -48.76 16 18 Si 1.10 44.60 29.91 68.60 2.05 46.66 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 22 C -0.05 -2.33 4.31 -19.87 -0.09 -2.41 16 23 C -0.10 -4.66 8.28 22.27 0.18 -4.47 16 24 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 25 C -0.14 -4.68 10.05 22.27 0.22 -4.45 16 26 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 27 C -0.15 -6.57 9.67 22.27 0.22 -6.36 16 28 C 0.10 3.69 5.86 86.22 0.50 4.19 16 29 C -0.12 -3.74 5.32 30.53 0.16 -3.58 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.11 0.77 5.76 -2.39 -0.01 0.76 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 0.88 6.19 -2.39 -0.01 0.86 16 35 H 0.07 1.21 6.47 -2.39 -0.02 1.19 16 36 H 0.08 2.57 6.91 -2.39 -0.02 2.56 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 1.89 6.72 -2.38 -0.02 1.87 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 41 H 0.26 14.23 6.46 -92.71 -0.60 13.63 16 42 H 0.10 4.42 7.91 -2.91 -0.02 4.40 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 45 H 0.14 4.05 8.06 -2.92 -0.02 4.03 16 46 H 0.11 4.48 7.95 -2.91 -0.02 4.46 16 47 H 0.11 4.90 4.01 -2.39 -0.01 4.89 16 48 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.07 2.25 7.72 -2.39 -0.02 2.23 16 Total: -1.00 -68.98 392.90 4.81 -64.18 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 1.11 Total: 37.37 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 6.16 Total: -7.71 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -4.42 Total: -90.39 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.09 Total: -50.11 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.05 Total: 46.66 kcal Total: -68.98 4.81 -64.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.711 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds