Wall clock time and date at job start Wed Apr 1 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99832 * 2 1 4 4 N 1.34775 * 119.99855 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00154 * 5.35725 * 4 2 1 6 6 C 1.46494 * 119.99592 * 185.36462 * 4 2 1 7 7 C 1.53043 * 109.46440 * 119.99693 * 6 4 2 8 8 C 1.53192 * 109.31329 * 181.37965 * 7 6 4 9 9 N 1.46924 * 108.77779 * 305.36664 * 8 7 6 10 10 C 1.34777 * 120.62590 * 233.58510 * 9 8 7 11 11 O 1.21281 * 120.00704 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99900 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47013 * 60.00141 * 12 10 9 14 14 C 1.50704 * 109.47263 * 300.00265 * 12 10 9 15 15 H 1.08000 * 120.00177 * 125.83740 * 14 12 10 16 16 C 1.37879 * 119.99920 * 305.83512 * 14 12 10 17 17 N 1.31517 * 119.99590 * 5.10188 * 16 14 12 18 18 Si 1.86796 * 119.99819 * 185.10019 * 16 14 12 19 19 H 1.48500 * 109.47373 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47205 * 120.00468 * 18 16 14 21 21 H 1.48510 * 109.46710 * 240.00274 * 18 16 14 22 22 C 1.50699 * 109.47542 * 180.02562 * 12 10 9 23 23 C 1.38228 * 120.00570 * 115.08589 * 22 12 10 24 24 C 1.38231 * 120.00451 * 179.97438 * 23 22 12 25 25 C 1.38237 * 119.99948 * 359.97438 * 24 23 22 26 26 C 1.38238 * 119.99877 * 0.06635 * 25 24 23 27 27 C 1.38236 * 119.99886 * 359.89238 * 26 25 24 28 28 C 1.46923 * 118.73964 * 53.85842 * 9 8 7 29 29 C 1.53047 * 109.46000 * 240.06260 * 6 4 2 30 30 H 1.09003 * 109.47371 * 185.17678 * 1 2 3 31 31 H 1.08995 * 109.47449 * 305.17677 * 1 2 3 32 32 H 1.09003 * 109.47361 * 65.17671 * 1 2 3 33 33 H 1.09004 * 109.47474 * 265.27528 * 5 4 2 34 34 H 1.09000 * 109.47272 * 25.27473 * 5 4 2 35 35 H 1.08999 * 109.47382 * 145.28148 * 5 4 2 36 36 H 1.09002 * 109.46659 * 0.02562 * 6 4 2 37 37 H 1.09002 * 109.49590 * 61.42623 * 7 6 4 38 38 H 1.08998 * 109.51872 * 301.34987 * 7 6 4 39 39 H 1.09001 * 109.58155 * 185.57460 * 8 7 6 40 40 H 1.08999 * 109.70320 * 65.22614 * 8 7 6 41 41 H 0.96996 * 119.99341 * 179.97438 * 17 16 14 42 42 H 1.08008 * 119.99614 * 359.97438 * 23 22 12 43 43 H 1.08000 * 119.99777 * 179.71786 * 24 23 22 44 44 H 1.07998 * 120.00111 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00071 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.99717 * 180.11049 * 27 26 25 47 47 H 1.08995 * 109.58468 * 65.92924 * 28 9 8 48 48 H 1.08995 * 109.58399 * 186.35311 * 28 9 8 49 49 H 1.09006 * 109.49466 * 298.56904 * 29 6 4 50 50 H 1.09003 * 109.49718 * 58.65998 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4532 -2.4331 -0.1195 6 6 3.6410 -1.1700 0.1181 7 6 4.0495 -1.9505 1.3695 8 6 5.5748 -1.9220 1.5090 9 7 6.1730 -2.4222 0.2638 10 6 7.0663 -3.4312 0.2881 11 8 7.3831 -3.9354 1.3447 12 6 7.6707 -3.9336 -0.9977 13 1 8.2048 -3.1209 -1.4900 14 6 6.5769 -4.4374 -1.9038 15 1 6.4902 -4.0549 -2.9100 16 6 5.6869 -5.3867 -1.4481 17 7 5.7291 -5.7790 -0.1935 18 14 4.4212 -6.1156 -2.6126 19 1 4.5821 -5.5115 -3.9596 20 1 4.6193 -7.5846 -2.7026 21 1 3.0563 -5.8305 -2.1015 22 6 8.6301 -5.0561 -0.6970 23 6 8.3644 -6.3335 -1.1536 24 6 9.2447 -7.3631 -0.8782 25 6 10.3911 -7.1152 -0.1465 26 6 10.6564 -5.8380 0.3109 27 6 9.7764 -4.8082 0.0348 28 6 5.7836 -1.7976 -1.0078 29 6 4.2519 -1.8313 -1.1196 30 1 -0.3634 -1.0235 0.0927 31 1 -0.3634 0.5920 0.8399 32 1 -0.3634 0.4314 -0.9327 33 1 1.2630 -2.8378 0.8746 34 1 0.5052 -2.2607 -0.6291 35 1 2.0499 -3.1428 -0.6925 36 1 4.0010 -0.1441 0.1965 37 1 3.7115 -2.9830 1.2808 38 1 3.5951 -1.4932 2.2484 39 1 5.8775 -2.5577 2.3411 40 1 5.9083 -0.9001 1.6899 41 1 5.1027 -6.4466 0.1272 42 1 7.4690 -6.5271 -1.7257 43 1 9.0348 -8.3619 -1.2312 44 1 11.0786 -7.9196 0.0690 45 1 11.5517 -5.6443 0.8829 46 1 9.9846 -3.8100 0.3906 47 1 6.1317 -0.7650 -1.0293 48 1 6.2241 -2.3513 -1.8368 49 1 3.9119 -2.8649 -1.1849 50 1 3.9415 -1.2887 -2.0126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362163314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:57 Heat of formation + Delta-G solvation = -30.920538 kcal Electronic energy + Delta-G solvation = -32064.192835 eV Core-core repulsion = 28056.742629 eV Total energy + Delta-G solvation = -4007.450206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.14231 -39.14853 -37.92235 -36.56915 -34.79539 -33.88378 -31.71382 -31.04407 -30.42889 -29.67590 -29.22495 -27.36090 -26.93330 -24.58986 -23.53199 -22.74805 -21.29354 -20.89162 -20.00407 -19.06975 -18.15159 -17.17197 -16.98903 -16.05204 -15.75991 -15.52636 -15.33579 -14.92536 -14.71209 -14.08413 -13.97165 -13.72541 -13.57325 -13.51210 -13.37218 -13.13113 -13.02735 -12.57020 -12.50183 -12.28939 -12.20087 -12.12532 -11.89428 -11.64963 -11.62124 -11.34435 -11.29264 -11.07098 -10.83244 -10.74383 -10.46118 -10.31881 -10.11386 -10.07838 -9.77419 -9.72637 -9.42000 -8.68747 -8.54912 -8.28192 -7.79099 -7.60757 -7.42811 -6.23797 -4.35060 2.47194 2.56971 2.62358 3.05545 3.06968 3.19877 3.22246 4.00996 4.14048 4.36281 4.57601 4.96123 4.98246 4.99310 5.03468 5.14738 5.20446 5.26285 5.47189 5.48589 5.60847 5.61830 5.72757 5.75838 5.80992 5.90272 5.90757 6.00366 6.02432 6.13547 6.16459 6.24439 6.35060 6.48046 6.56830 6.59040 6.63058 6.69839 6.75183 6.78068 6.83996 7.05942 7.19120 7.45308 7.47552 7.56206 7.59308 7.65696 7.74697 8.10869 8.18648 8.21566 8.53158 8.73157 9.25775 9.71532 10.76791 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003796 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.190536 B = 7373.470364 C = 8418.797079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.509 3.491 3 O -0.553 6.553 4 N -0.608 5.608 5 C 0.072 3.928 6 C 0.140 3.860 7 C -0.135 4.135 8 C 0.122 3.878 9 N -0.614 5.614 10 C 0.562 3.438 11 O -0.548 6.548 12 C 0.055 3.945 13 H 0.055 0.945 14 C -0.532 4.532 15 H 0.070 0.930 16 C 0.074 3.926 17 N -0.840 5.840 18 Si 0.877 3.123 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.283 1.283 22 C -0.018 4.018 23 C -0.059 4.059 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.114 4.114 28 C 0.116 3.884 29 C -0.135 4.135 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.265 0.735 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.043 0.957 48 H 0.121 0.879 49 H 0.077 0.923 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 5.137 -1.128 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.298 3.702 3 O -0.432 6.432 4 N -0.341 5.341 5 C -0.071 4.071 6 C 0.037 3.963 7 C -0.175 4.175 8 C -0.002 4.002 9 N -0.349 5.349 10 C 0.353 3.647 11 O -0.425 6.425 12 C 0.034 3.966 13 H 0.073 0.927 14 C -0.570 4.570 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.473 5.473 18 Si 0.704 3.296 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.209 1.209 22 C -0.019 4.019 23 C -0.077 4.077 24 C -0.167 4.167 25 C -0.162 4.162 26 C -0.161 4.161 27 C -0.132 4.132 28 C -0.008 4.008 29 C -0.174 4.174 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.154 0.846 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.062 0.938 48 H 0.139 0.861 49 H 0.096 0.904 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.133 5.254 -0.394 8.086 hybrid contribution -1.161 -0.764 -0.375 1.439 sum -7.294 4.491 -0.769 8.600 Atomic orbital electron populations 1.21989 0.92324 1.04470 1.04930 1.20783 0.90481 0.83306 0.75601 1.90690 1.70685 1.31192 1.50596 1.48058 1.07616 1.06249 1.72176 1.21867 0.97102 0.86153 1.02009 1.21184 0.78107 1.01226 0.95749 1.22196 0.97273 1.01171 0.96811 1.21215 0.90873 0.98456 0.89655 1.47816 1.44716 1.36735 1.05586 1.20866 0.76977 0.75635 0.91254 1.90521 1.62350 1.55974 1.33609 1.17951 0.93818 0.92805 0.92058 0.92704 1.20696 1.12783 1.24513 0.98992 0.91206 1.24986 0.96961 0.96401 0.94919 1.70085 1.35231 1.28954 1.13003 0.86764 0.81510 0.79685 0.81664 1.19298 1.20664 1.20905 1.19839 0.92471 0.95780 0.93764 1.21409 0.97467 0.91575 0.97269 1.21065 0.95714 0.98630 1.01260 1.20797 0.98093 0.96233 1.01048 1.20784 0.99620 0.93576 1.02099 1.20888 0.95250 0.98140 0.98922 1.21846 0.93223 0.96832 0.88935 1.22249 0.97055 1.01779 0.96352 0.90093 0.89000 0.89033 0.92510 0.90820 0.90366 0.88573 0.90951 0.91937 0.89376 0.93186 0.92450 0.84620 0.88025 0.88118 0.87991 0.88066 0.93847 0.86095 0.90445 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.90 36.01 0.36 -1.21 16 2 C 0.51 6.94 7.77 -10.98 -0.09 6.85 16 3 O -0.55 -9.74 16.44 5.56 0.09 -9.65 16 4 N -0.61 -8.15 2.76 -173.89 -0.48 -8.63 16 5 C 0.07 0.79 9.09 59.84 0.54 1.34 16 6 C 0.14 2.13 2.48 -67.89 -0.17 1.96 16 7 C -0.14 -2.14 5.34 -26.61 -0.14 -2.28 16 8 C 0.12 2.17 6.43 -3.71 -0.02 2.14 16 9 N -0.61 -12.06 2.97 -172.52 -0.51 -12.57 16 10 C 0.56 12.97 5.30 -10.99 -0.06 12.91 16 11 O -0.55 -14.52 14.56 5.56 0.08 -14.44 16 12 C 0.05 1.24 1.89 -94.07 -0.18 1.06 16 13 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 14 C -0.53 -11.98 5.32 -34.44 -0.18 -12.16 16 15 H 0.07 1.53 7.56 -52.49 -0.40 1.14 16 16 C 0.07 1.72 3.19 -17.82 -0.06 1.67 16 17 N -0.84 -21.18 10.42 55.43 0.58 -20.60 16 18 Si 0.88 18.22 29.54 -169.99 -5.02 13.20 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.02 -0.41 4.50 -104.63 -0.47 -0.88 16 23 C -0.06 -1.37 8.01 -39.59 -0.32 -1.69 16 24 C -0.15 -3.08 10.05 -39.58 -0.40 -3.48 16 25 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 26 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 27 C -0.11 -2.47 8.74 -39.58 -0.35 -2.82 16 28 C 0.12 1.98 5.91 -3.49 -0.02 1.96 16 29 C -0.14 -2.15 5.31 -26.39 -0.14 -2.29 16 30 H 0.08 0.56 5.60 -51.93 -0.29 0.27 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.61 6.02 -51.93 -0.31 0.30 16 35 H 0.08 1.00 6.48 -51.93 -0.34 0.67 16 36 H 0.10 1.59 6.91 -51.93 -0.36 1.23 16 37 H 0.07 1.27 7.72 -51.93 -0.40 0.87 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.75 7.01 -51.93 -0.36 1.38 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.14 3.27 4.97 -52.48 -0.26 3.01 16 43 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 44 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.12 2.21 4.42 -51.93 -0.23 1.98 16 49 H 0.08 1.38 6.76 -51.93 -0.35 1.03 16 50 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -29.98 386.23 -9.43 -39.41 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -7.50 Total: 10.78 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.48 Total: -3.32 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.41 Total: -41.81 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.17 Total: -24.08 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.98 -9.43 -39.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.486 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds