Wall clock time and date at job start Wed Apr 1 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99832 * 2 1 4 4 N 1.34775 * 119.99855 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00154 * 5.35725 * 4 2 1 6 6 C 1.46494 * 119.99592 * 185.36462 * 4 2 1 7 7 C 1.53043 * 109.46440 * 119.99693 * 6 4 2 8 8 C 1.53192 * 109.31329 * 181.37965 * 7 6 4 9 9 N 1.46924 * 108.77779 * 305.36664 * 8 7 6 10 10 C 1.34777 * 120.62590 * 233.58510 * 9 8 7 11 11 O 1.21281 * 120.00704 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99900 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47013 * 60.00141 * 12 10 9 14 14 C 1.50704 * 109.47263 * 300.00265 * 12 10 9 15 15 H 1.08000 * 120.00177 * 125.83740 * 14 12 10 16 16 C 1.37879 * 119.99920 * 305.83512 * 14 12 10 17 17 N 1.31517 * 119.99590 * 5.10188 * 16 14 12 18 18 Si 1.86796 * 119.99819 * 185.10019 * 16 14 12 19 19 H 1.48500 * 109.47373 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47205 * 120.00468 * 18 16 14 21 21 H 1.48510 * 109.46710 * 240.00274 * 18 16 14 22 22 C 1.50699 * 109.47542 * 180.02562 * 12 10 9 23 23 C 1.38228 * 120.00570 * 115.08589 * 22 12 10 24 24 C 1.38231 * 120.00451 * 179.97438 * 23 22 12 25 25 C 1.38237 * 119.99948 * 359.97438 * 24 23 22 26 26 C 1.38238 * 119.99877 * 0.06635 * 25 24 23 27 27 C 1.38236 * 119.99886 * 359.89238 * 26 25 24 28 28 C 1.46923 * 118.73964 * 53.85842 * 9 8 7 29 29 C 1.53047 * 109.46000 * 240.06260 * 6 4 2 30 30 H 1.09003 * 109.47371 * 185.17678 * 1 2 3 31 31 H 1.08995 * 109.47449 * 305.17677 * 1 2 3 32 32 H 1.09003 * 109.47361 * 65.17671 * 1 2 3 33 33 H 1.09004 * 109.47474 * 265.27528 * 5 4 2 34 34 H 1.09000 * 109.47272 * 25.27473 * 5 4 2 35 35 H 1.08999 * 109.47382 * 145.28148 * 5 4 2 36 36 H 1.09002 * 109.46659 * 0.02562 * 6 4 2 37 37 H 1.09002 * 109.49590 * 61.42623 * 7 6 4 38 38 H 1.08998 * 109.51872 * 301.34987 * 7 6 4 39 39 H 1.09001 * 109.58155 * 185.57460 * 8 7 6 40 40 H 1.08999 * 109.70320 * 65.22614 * 8 7 6 41 41 H 0.96996 * 119.99341 * 179.97438 * 17 16 14 42 42 H 1.08008 * 119.99614 * 359.97438 * 23 22 12 43 43 H 1.08000 * 119.99777 * 179.71786 * 24 23 22 44 44 H 1.07998 * 120.00111 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00071 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.99717 * 180.11049 * 27 26 25 47 47 H 1.08995 * 109.58468 * 65.92924 * 28 9 8 48 48 H 1.08995 * 109.58399 * 186.35311 * 28 9 8 49 49 H 1.09006 * 109.49466 * 298.56904 * 29 6 4 50 50 H 1.09003 * 109.49718 * 58.65998 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4532 -2.4331 -0.1195 6 6 3.6410 -1.1700 0.1181 7 6 4.0495 -1.9505 1.3695 8 6 5.5748 -1.9220 1.5090 9 7 6.1730 -2.4222 0.2638 10 6 7.0663 -3.4312 0.2881 11 8 7.3831 -3.9354 1.3447 12 6 7.6707 -3.9336 -0.9977 13 1 8.2048 -3.1209 -1.4900 14 6 6.5769 -4.4374 -1.9038 15 1 6.4902 -4.0549 -2.9100 16 6 5.6869 -5.3867 -1.4481 17 7 5.7291 -5.7790 -0.1935 18 14 4.4212 -6.1156 -2.6126 19 1 4.5821 -5.5115 -3.9596 20 1 4.6193 -7.5846 -2.7026 21 1 3.0563 -5.8305 -2.1015 22 6 8.6301 -5.0561 -0.6970 23 6 8.3644 -6.3335 -1.1536 24 6 9.2447 -7.3631 -0.8782 25 6 10.3911 -7.1152 -0.1465 26 6 10.6564 -5.8380 0.3109 27 6 9.7764 -4.8082 0.0348 28 6 5.7836 -1.7976 -1.0078 29 6 4.2519 -1.8313 -1.1196 30 1 -0.3634 -1.0235 0.0927 31 1 -0.3634 0.5920 0.8399 32 1 -0.3634 0.4314 -0.9327 33 1 1.2630 -2.8378 0.8746 34 1 0.5052 -2.2607 -0.6291 35 1 2.0499 -3.1428 -0.6925 36 1 4.0010 -0.1441 0.1965 37 1 3.7115 -2.9830 1.2808 38 1 3.5951 -1.4932 2.2484 39 1 5.8775 -2.5577 2.3411 40 1 5.9083 -0.9001 1.6899 41 1 5.1027 -6.4466 0.1272 42 1 7.4690 -6.5271 -1.7257 43 1 9.0348 -8.3619 -1.2312 44 1 11.0786 -7.9196 0.0690 45 1 11.5517 -5.6443 0.8829 46 1 9.9846 -3.8100 0.3906 47 1 6.1317 -0.7650 -1.0293 48 1 6.2241 -2.3513 -1.8368 49 1 3.9119 -2.8649 -1.1849 50 1 3.9415 -1.2887 -2.0126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362163314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:56 Heat of formation + Delta-G solvation = -46.851764 kcal Electronic energy + Delta-G solvation = -32064.883665 eV Core-core repulsion = 28056.742629 eV Total energy + Delta-G solvation = -4008.141035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40782 -40.66980 -39.45511 -38.04845 -36.13613 -35.62971 -33.10111 -32.64778 -31.88676 -31.31695 -30.19118 -28.99068 -27.96200 -26.18755 -25.06584 -24.17572 -22.93182 -22.39303 -21.47796 -20.19872 -19.72565 -18.82965 -18.08662 -17.50093 -17.22336 -16.91671 -16.64518 -16.54794 -16.28329 -15.69099 -15.51408 -15.33580 -14.87571 -14.71279 -14.59748 -14.32099 -14.17583 -14.10204 -13.87863 -13.85250 -13.73620 -13.35034 -13.06538 -13.02691 -12.97773 -12.77515 -12.67779 -12.62136 -12.48258 -12.23351 -12.01233 -11.76769 -11.73346 -11.47767 -11.43743 -11.15095 -10.84800 -10.50421 -10.10806 -9.66396 -9.43503 -9.21562 -9.09319 -8.04513 -6.18672 0.83281 0.93144 1.38971 1.48121 1.54890 1.59368 2.01203 2.33128 2.44272 2.68411 3.21554 3.31536 3.59393 3.84799 3.92926 4.09362 4.21219 4.24450 4.30537 4.33683 4.35057 4.40319 4.46906 4.49823 4.56414 4.59237 4.66024 4.69663 4.74195 4.80962 4.85459 4.89185 4.94690 4.99254 5.07551 5.12087 5.14502 5.16933 5.20724 5.40323 5.42728 5.51032 5.56486 5.72482 5.86232 5.94858 5.99577 6.08016 6.41767 6.43126 6.52266 6.77220 7.01976 7.14294 7.44328 7.96189 8.95390 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003796 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.190536 B = 7373.470364 C = 8418.797079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.503 3.497 3 O -0.599 6.599 4 N -0.610 5.610 5 C 0.069 3.931 6 C 0.147 3.853 7 C -0.121 4.121 8 C 0.121 3.879 9 N -0.613 5.613 10 C 0.560 3.440 11 O -0.590 6.590 12 C 0.049 3.951 13 H 0.062 0.938 14 C -0.523 4.523 15 H 0.073 0.927 16 C 0.049 3.951 17 N -0.870 5.870 18 Si 0.925 3.075 19 H -0.261 1.261 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.041 4.041 23 C -0.084 4.084 24 C -0.156 4.156 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.131 4.131 28 C 0.113 3.887 29 C -0.125 4.125 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.256 0.744 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.057 0.943 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 5.382 -1.680 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.294 3.706 3 O -0.480 6.480 4 N -0.341 5.341 5 C -0.073 4.073 6 C 0.044 3.956 7 C -0.160 4.160 8 C -0.003 4.003 9 N -0.346 5.346 10 C 0.351 3.649 11 O -0.470 6.470 12 C 0.028 3.972 13 H 0.080 0.920 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.155 4.155 17 N -0.504 5.504 18 Si 0.751 3.249 19 H -0.185 1.185 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.042 4.042 23 C -0.102 4.102 24 C -0.174 4.174 25 C -0.159 4.159 26 C -0.161 4.161 27 C -0.149 4.149 28 C -0.010 4.010 29 C -0.164 4.164 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.156 0.844 45 H 0.152 0.848 46 H 0.120 0.880 47 H 0.084 0.916 48 H 0.128 0.872 49 H 0.076 0.924 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.239 5.518 -0.983 9.155 hybrid contribution -0.766 -0.818 -0.205 1.139 sum -8.005 4.700 -1.188 9.358 Atomic orbital electron populations 1.22018 0.88183 1.06404 1.06155 1.21669 0.92389 0.82317 0.74182 1.90670 1.71992 1.32701 1.52683 1.48123 1.06802 1.07362 1.71837 1.22020 0.97917 0.84642 1.02681 1.20917 0.79819 1.00133 0.94760 1.22028 0.95714 1.00224 0.98029 1.21299 0.92196 0.98747 0.88072 1.47850 1.43775 1.35886 1.07115 1.20949 0.77291 0.75879 0.90756 1.90480 1.64026 1.57689 1.34843 1.18029 0.94030 0.93162 0.92006 0.91974 1.20796 1.12408 1.23989 0.98897 0.90850 1.25383 0.98140 0.96493 0.95486 1.70238 1.35947 1.29614 1.14634 0.86013 0.80041 0.78282 0.80570 1.18510 1.21784 1.20396 1.19996 0.93288 0.96074 0.94830 1.21381 0.97825 0.92474 0.98507 1.21360 0.95825 0.98998 1.01195 1.21203 0.97930 0.97110 0.99611 1.21185 1.00104 0.93259 1.01518 1.21046 0.95558 0.99020 0.99306 1.21946 0.94211 0.97509 0.87354 1.22118 0.95982 1.00839 0.97430 0.87751 0.87923 0.87566 0.91703 0.87339 0.92349 0.89483 0.92937 0.90374 0.91903 0.91104 0.93431 0.86375 0.85999 0.84385 0.84837 0.88023 0.91627 0.87236 0.92387 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.90 71.24 0.70 -1.69 16 2 C 0.50 12.69 7.77 87.66 0.68 13.37 16 3 O -0.60 -20.45 16.44 -3.03 -0.05 -20.50 16 4 N -0.61 -15.33 2.76 -822.44 -2.27 -17.60 16 5 C 0.07 1.39 9.09 127.77 1.16 2.55 16 6 C 0.15 4.37 2.48 45.02 0.11 4.48 16 7 C -0.12 -3.81 5.34 30.67 0.16 -3.64 16 8 C 0.12 4.35 6.43 86.36 0.56 4.90 16 9 N -0.61 -24.54 2.97 -818.11 -2.43 -26.96 16 10 C 0.56 26.65 5.30 87.66 0.46 27.11 16 11 O -0.59 -32.50 14.56 -3.03 -0.04 -32.54 16 12 C 0.05 2.26 1.89 -13.03 -0.02 2.24 16 13 H 0.06 2.68 7.93 -2.39 -0.02 2.66 16 14 C -0.52 -23.97 5.32 25.60 0.14 -23.84 16 15 H 0.07 3.24 7.56 -2.91 -0.02 3.22 16 16 C 0.05 2.31 3.19 84.65 0.27 2.58 16 17 N -0.87 -45.28 10.42 21.45 0.22 -45.05 16 18 Si 0.92 37.72 29.54 68.60 2.03 39.75 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 22 C -0.04 -1.94 4.50 -19.87 -0.09 -2.03 16 23 C -0.08 -3.94 8.01 22.27 0.18 -3.76 16 24 C -0.16 -6.34 10.05 22.27 0.22 -6.12 16 25 C -0.14 -5.16 10.05 22.27 0.22 -4.93 16 26 C -0.14 -5.44 10.05 22.27 0.22 -5.22 16 27 C -0.13 -5.74 8.74 22.27 0.19 -5.54 16 28 C 0.11 3.85 5.91 86.51 0.51 4.36 16 29 C -0.12 -3.90 5.31 30.82 0.16 -3.74 16 30 H 0.10 0.98 5.60 -2.39 -0.01 0.96 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.11 1.40 6.02 -2.39 -0.01 1.38 16 35 H 0.06 1.44 6.48 -2.39 -0.02 1.42 16 36 H 0.09 2.80 6.91 -2.39 -0.02 2.79 16 37 H 0.05 1.87 7.72 -2.39 -0.02 1.85 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 2.60 7.01 -2.39 -0.02 2.58 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 42 H 0.12 5.87 4.97 -2.91 -0.01 5.85 16 43 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 44 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 45 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 46 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.11 4.02 4.42 -2.39 -0.01 4.01 16 49 H 0.06 2.07 6.76 -2.38 -0.02 2.05 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -67.32 386.23 4.26 -63.06 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: 0.94 Total: 38.76 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.85 Total: 1.09 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -4.47 Total: -89.61 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.09 Total: -53.04 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -67.32 4.26 -63.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.211 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds