Wall clock time and date at job start Wed Apr 1 2020 03:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.46718 * 2 1 4 4 C 1.34235 * 116.99689 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99916 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99992 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47137 * 15.00315 * 6 4 3 8 8 F 1.39894 * 109.47057 * 254.99776 * 6 4 3 9 9 C 1.53001 * 109.46774 * 134.99774 * 6 4 3 10 10 C 1.53503 * 114.20744 * 65.00502 * 9 6 4 11 11 N 1.47066 * 87.98596 * 139.64985 * 10 9 6 12 12 C 1.34772 * 136.05397 * 152.84244 * 11 10 9 13 13 O 1.21589 * 120.00377 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00193 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00507 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47156 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47004 * 299.99938 * 16 15 14 18 18 C 1.53005 * 109.47006 * 59.99891 * 16 15 14 19 19 C 1.53002 * 109.46886 * 179.97438 * 16 15 14 20 20 C 1.50703 * 109.46940 * 179.97438 * 19 16 15 21 21 H 1.08003 * 120.00073 * 359.97438 * 20 19 16 22 22 C 1.37875 * 119.99888 * 180.02562 * 20 19 16 23 23 N 1.31514 * 120.00159 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46750 * 90.00843 * 24 22 20 26 26 H 1.48498 * 109.46912 * 210.00375 * 24 22 20 27 27 H 1.48494 * 109.47184 * 330.00549 * 24 22 20 28 28 C 1.47060 * 87.88602 * 332.87796 * 11 10 9 29 29 H 1.09002 * 109.47302 * 299.99613 * 1 2 3 30 30 H 1.09000 * 109.47562 * 60.00100 * 1 2 3 31 31 H 1.09003 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46999 * 239.99674 * 2 1 3 33 33 H 1.08996 * 109.46866 * 120.00015 * 2 1 3 34 34 H 1.08995 * 113.41835 * 291.80006 * 9 6 4 35 35 H 1.09000 * 113.46355 * 24.86937 * 10 9 6 36 36 H 1.09003 * 113.46309 * 254.43382 * 10 9 6 37 37 H 0.97010 * 119.99624 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.46649 * 300.00132 * 15 14 12 39 39 H 1.08997 * 109.47103 * 60.00147 * 15 14 12 40 40 H 1.08994 * 109.47123 * 60.00502 * 17 16 15 41 41 H 1.09006 * 109.46897 * 180.02562 * 17 16 15 42 42 H 1.08997 * 109.47136 * 300.00056 * 17 16 15 43 43 H 1.09004 * 109.46984 * 60.00367 * 18 16 15 44 44 H 1.09006 * 109.46865 * 179.97438 * 18 16 15 45 45 H 1.08997 * 109.47313 * 299.99398 * 18 16 15 46 46 H 1.08993 * 109.47054 * 300.00019 * 19 16 15 47 47 H 1.08997 * 109.46975 * 60.00116 * 19 16 15 48 48 H 0.96993 * 120.00069 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.46761 * 141.90148 * 28 11 10 50 50 H 1.08996 * 113.47187 * 272.28382 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9206 2.9374 -0.0012 7 1 3.1423 3.6527 0.2650 8 9 4.4139 3.2375 -1.2754 9 6 5.0585 3.0191 1.0185 10 6 6.2711 2.1408 0.6801 11 7 7.1313 3.2444 1.1330 12 6 8.3691 3.3590 1.6535 13 8 9.0437 2.3652 1.8425 14 7 8.8598 4.5754 1.9635 15 6 10.2057 4.7001 2.5288 16 6 10.5152 6.1759 2.7880 17 6 10.4412 6.9514 1.4712 18 6 9.4931 6.7459 3.7737 19 6 11.9205 6.3061 3.3789 20 6 12.2256 7.7598 3.6336 21 1 11.4908 8.5152 3.3973 22 6 13.4431 8.1253 4.1674 23 7 13.7092 9.3938 4.3902 24 14 14.7142 6.8187 4.5755 25 1 15.5825 6.5866 3.3935 26 1 15.5452 7.2763 5.7180 27 1 14.0253 5.5546 4.9396 28 6 6.0460 4.1675 0.7689 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.7211 2.9364 2.0516 35 1 6.3668 1.9244 -0.3839 36 1 6.3472 1.2481 1.3010 37 1 8.3218 5.3683 1.8124 38 1 10.2582 4.1479 3.4671 39 1 10.9337 4.2937 1.8267 40 1 9.4399 6.8587 1.0507 41 1 10.6621 8.0028 1.6558 42 1 11.1692 6.5454 0.7690 43 1 9.5459 6.1933 4.7118 44 1 9.7139 7.7972 3.9587 45 1 8.4918 6.6531 3.3531 46 1 11.9727 5.7537 4.3170 47 1 12.6488 5.8999 2.6770 48 1 14.5656 9.6510 4.7661 49 1 5.9307 4.9982 1.4653 50 1 6.0823 4.4916 -0.2711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364637591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:18 Heat of formation + Delta-G solvation = -131.779254 kcal Electronic energy + Delta-G solvation = -30387.742842 eV Core-core repulsion = 25945.149850 eV Total energy + Delta-G solvation = -4442.592993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.67560 -41.12268 -40.46831 -38.61995 -37.28416 -36.93146 -33.59148 -32.61429 -32.14213 -31.47066 -28.34564 -27.62912 -26.55068 -26.54087 -25.60515 -24.04630 -22.66998 -22.07250 -20.94818 -19.74365 -18.84056 -18.57822 -17.73564 -17.64035 -17.30503 -16.87157 -16.80289 -16.26812 -16.01558 -15.20508 -14.75003 -14.58657 -14.46451 -14.19260 -13.91101 -13.78364 -13.61394 -13.45513 -13.38431 -13.17186 -12.90353 -12.70418 -12.65711 -12.53152 -12.27118 -12.20931 -12.17236 -11.87423 -11.33871 -11.23527 -11.14972 -11.11229 -10.99937 -10.72454 -10.60555 -10.46835 -10.10642 -9.95869 -9.73624 -9.50912 -9.03776 -8.98484 -8.55126 -8.52242 -6.03424 -4.00625 1.38006 1.75829 2.40396 3.27799 3.33055 3.40942 3.45597 3.51727 3.66578 3.88028 4.02773 4.17293 4.23812 4.34741 4.37003 4.46940 4.56039 4.68174 4.93628 5.02674 5.05782 5.11445 5.18864 5.29479 5.31378 5.37575 5.44697 5.50857 5.55588 5.65139 5.67996 5.76686 6.12863 6.14218 6.20182 6.34009 6.51973 6.60419 6.74181 6.92778 6.98812 7.02253 7.05739 7.20133 7.22334 7.38312 7.78982 8.09223 8.53466 8.71245 9.00425 9.59440 11.09257 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.001772 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.489498 B =15796.727003 C =16131.931315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.352 6.352 4 C 0.442 3.558 5 O -0.476 6.476 6 C 0.125 3.875 7 H 0.127 0.873 8 F -0.176 7.176 9 C -0.157 4.157 10 C 0.145 3.855 11 N -0.670 5.670 12 C 0.734 3.266 13 O -0.588 6.588 14 N -0.732 5.732 15 C 0.144 3.856 16 C -0.063 4.063 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.002 4.002 20 C -0.511 4.511 21 H 0.078 0.922 22 C 0.067 3.933 23 N -0.904 5.904 24 Si 0.874 3.126 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.265 1.265 28 C 0.112 3.888 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.395 0.605 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.019 0.981 47 H 0.014 0.986 48 H 0.262 0.738 49 H 0.085 0.915 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.551 -14.256 -9.813 34.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.268 6.268 4 C 0.281 3.719 5 O -0.361 6.361 6 C 0.087 3.913 7 H 0.145 0.855 8 F -0.156 7.156 9 C -0.176 4.176 10 C 0.021 3.979 11 N -0.411 5.411 12 C 0.437 3.563 13 O -0.465 6.465 14 N -0.387 5.387 15 C 0.021 3.979 16 C -0.064 4.064 17 C -0.185 4.185 18 C -0.184 4.184 19 C -0.040 4.040 20 C -0.549 4.549 21 H 0.096 0.904 22 C -0.134 4.134 23 N -0.543 5.543 24 Si 0.702 3.298 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.190 1.190 28 C -0.011 4.011 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.048 0.952 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.402 -15.174 -9.516 33.578 hybrid contribution 0.570 -0.377 0.021 0.684 sum -27.832 -15.551 -9.494 33.266 Atomic orbital electron populations 1.21828 0.92191 1.03311 1.03742 1.23155 0.95680 0.79383 1.03090 1.86509 1.23636 1.33338 1.83360 1.23938 0.81424 0.92657 0.73841 1.90744 1.60296 1.42577 1.42442 1.20899 0.97094 0.92305 0.81017 0.85538 1.92933 1.89095 1.93395 1.40224 1.23664 0.92969 1.00889 1.00094 1.22669 0.82699 0.91606 1.00906 1.48543 1.14165 1.11264 1.67107 1.15252 0.78626 0.84377 0.78063 1.90931 1.57592 1.36920 1.61088 1.45265 1.18863 1.06244 1.68334 1.21535 0.80635 0.97865 0.97860 1.20710 0.98613 0.90952 0.96103 1.21763 0.98714 1.02141 0.95858 1.21759 0.95658 1.02870 0.98133 1.19588 0.90375 0.98429 0.95560 1.21076 1.01405 0.90841 1.41535 0.90407 1.24992 0.98168 0.95023 0.95221 1.69898 1.23597 1.15636 1.45185 0.86860 0.81892 0.82824 0.78215 1.20378 1.21517 1.18958 1.22902 0.82594 0.93538 1.02115 0.91267 0.91295 0.89938 0.90825 0.90737 0.85123 0.89387 0.89687 0.77027 0.91971 0.91960 0.95126 0.90889 0.93389 0.93397 0.90884 0.95159 0.96311 0.96761 0.92810 0.89624 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 10.29 37.16 0.38 -0.05 16 2 C 0.06 0.30 6.19 37.16 0.23 0.53 16 3 O -0.35 -2.27 10.22 -39.27 -0.40 -2.67 16 4 C 0.44 3.27 7.30 36.01 0.26 3.54 16 5 O -0.48 -4.86 15.05 -18.75 -0.28 -5.15 16 6 C 0.12 0.67 4.00 -27.88 -0.11 0.56 16 7 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 8 F -0.18 -1.29 15.41 2.25 0.03 -1.26 16 9 C -0.16 -1.01 4.04 -90.10 -0.36 -1.37 16 10 C 0.14 1.51 6.48 -8.51 -0.06 1.46 16 11 N -0.67 -8.17 3.69 -191.02 -0.70 -8.88 16 12 C 0.73 12.01 8.79 -86.93 -0.76 11.24 16 13 O -0.59 -12.21 17.12 5.29 0.09 -12.12 16 14 N -0.73 -11.00 4.96 -65.22 -0.32 -11.32 16 15 C 0.14 2.53 4.56 -4.04 -0.02 2.51 16 16 C -0.06 -1.17 0.54 -154.50 -0.08 -1.25 16 17 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 18 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 19 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 20 C -0.51 -13.69 8.20 -34.44 -0.28 -13.97 16 21 H 0.08 2.20 5.92 -52.48 -0.31 1.89 16 22 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 23 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 24 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 28 C 0.11 0.84 7.74 -8.51 -0.07 0.77 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 34 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.95 7.74 -51.93 -0.40 0.54 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.39 5.01 5.88 -40.82 -0.24 4.77 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 41 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 45 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 46 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 47 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.65 7.20 -51.93 -0.37 0.27 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -35.08 404.06 -8.01 -43.08 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.16 Total: -0.11 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.46 Total: 1.81 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.25 Total: -46.66 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.59 Total: -19.94 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.03 Total: -1.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.08 -8.01 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364637591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.696 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds