Wall clock time and date at job start Wed Apr 1 2020 03:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.46718 * 2 1 4 4 C 1.34235 * 116.99689 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99916 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99992 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47137 * 15.00315 * 6 4 3 8 8 F 1.39894 * 109.47057 * 254.99776 * 6 4 3 9 9 C 1.53001 * 109.46774 * 134.99774 * 6 4 3 10 10 C 1.53503 * 114.20744 * 65.00502 * 9 6 4 11 11 N 1.47066 * 87.98596 * 139.64985 * 10 9 6 12 12 C 1.34772 * 136.05397 * 152.84244 * 11 10 9 13 13 O 1.21589 * 120.00377 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00193 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00507 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47156 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47004 * 299.99938 * 16 15 14 18 18 C 1.53005 * 109.47006 * 59.99891 * 16 15 14 19 19 C 1.53002 * 109.46886 * 179.97438 * 16 15 14 20 20 C 1.50703 * 109.46940 * 179.97438 * 19 16 15 21 21 H 1.08003 * 120.00073 * 359.97438 * 20 19 16 22 22 C 1.37875 * 119.99888 * 180.02562 * 20 19 16 23 23 N 1.31514 * 120.00159 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46750 * 90.00843 * 24 22 20 26 26 H 1.48498 * 109.46912 * 210.00375 * 24 22 20 27 27 H 1.48494 * 109.47184 * 330.00549 * 24 22 20 28 28 C 1.47060 * 87.88602 * 332.87796 * 11 10 9 29 29 H 1.09002 * 109.47302 * 299.99613 * 1 2 3 30 30 H 1.09000 * 109.47562 * 60.00100 * 1 2 3 31 31 H 1.09003 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46999 * 239.99674 * 2 1 3 33 33 H 1.08996 * 109.46866 * 120.00015 * 2 1 3 34 34 H 1.08995 * 113.41835 * 291.80006 * 9 6 4 35 35 H 1.09000 * 113.46355 * 24.86937 * 10 9 6 36 36 H 1.09003 * 113.46309 * 254.43382 * 10 9 6 37 37 H 0.97010 * 119.99624 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.46649 * 300.00132 * 15 14 12 39 39 H 1.08997 * 109.47103 * 60.00147 * 15 14 12 40 40 H 1.08994 * 109.47123 * 60.00502 * 17 16 15 41 41 H 1.09006 * 109.46897 * 180.02562 * 17 16 15 42 42 H 1.08997 * 109.47136 * 300.00056 * 17 16 15 43 43 H 1.09004 * 109.46984 * 60.00367 * 18 16 15 44 44 H 1.09006 * 109.46865 * 179.97438 * 18 16 15 45 45 H 1.08997 * 109.47313 * 299.99398 * 18 16 15 46 46 H 1.08993 * 109.47054 * 300.00019 * 19 16 15 47 47 H 1.08997 * 109.46975 * 60.00116 * 19 16 15 48 48 H 0.96993 * 120.00069 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.46761 * 141.90148 * 28 11 10 50 50 H 1.08996 * 113.47187 * 272.28382 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9206 2.9374 -0.0012 7 1 3.1423 3.6527 0.2650 8 9 4.4139 3.2375 -1.2754 9 6 5.0585 3.0191 1.0185 10 6 6.2711 2.1408 0.6801 11 7 7.1313 3.2444 1.1330 12 6 8.3691 3.3590 1.6535 13 8 9.0437 2.3652 1.8425 14 7 8.8598 4.5754 1.9635 15 6 10.2057 4.7001 2.5288 16 6 10.5152 6.1759 2.7880 17 6 10.4412 6.9514 1.4712 18 6 9.4931 6.7459 3.7737 19 6 11.9205 6.3061 3.3789 20 6 12.2256 7.7598 3.6336 21 1 11.4908 8.5152 3.3973 22 6 13.4431 8.1253 4.1674 23 7 13.7092 9.3938 4.3902 24 14 14.7142 6.8187 4.5755 25 1 15.5825 6.5866 3.3935 26 1 15.5452 7.2763 5.7180 27 1 14.0253 5.5546 4.9396 28 6 6.0460 4.1675 0.7689 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.7211 2.9364 2.0516 35 1 6.3668 1.9244 -0.3839 36 1 6.3472 1.2481 1.3010 37 1 8.3218 5.3683 1.8124 38 1 10.2582 4.1479 3.4671 39 1 10.9337 4.2937 1.8267 40 1 9.4399 6.8587 1.0507 41 1 10.6621 8.0028 1.6558 42 1 11.1692 6.5454 0.7690 43 1 9.5459 6.1933 4.7118 44 1 9.7139 7.7972 3.9587 45 1 8.4918 6.6531 3.3531 46 1 11.9727 5.7537 4.3170 47 1 12.6488 5.8999 2.6770 48 1 14.5656 9.6510 4.7661 49 1 5.9307 4.9982 1.4653 50 1 6.0823 4.4916 -0.2711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364637591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:17 Heat of formation + Delta-G solvation = -154.429810 kcal Electronic energy + Delta-G solvation = -30388.725044 eV Core-core repulsion = 25945.149850 eV Total energy + Delta-G solvation = -4443.575194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.17042 -41.79813 -41.34620 -39.75477 -38.44919 -37.78893 -35.20273 -34.03162 -33.02246 -32.15559 -29.82671 -28.89793 -27.97938 -27.40767 -26.75331 -24.68670 -24.09227 -22.93831 -21.66705 -20.80756 -19.83573 -19.34328 -18.93574 -18.78141 -18.26766 -17.92770 -17.46018 -17.22244 -16.82701 -16.31739 -16.24292 -15.62746 -15.35808 -15.32666 -15.13478 -14.97043 -14.61659 -14.46423 -14.16869 -14.15478 -14.01694 -13.88051 -13.66853 -13.49944 -13.20219 -12.95112 -12.92576 -12.84017 -12.60117 -12.53393 -12.40267 -12.29875 -12.15965 -12.01836 -11.77251 -11.57295 -11.52021 -11.43379 -11.29804 -11.14082 -10.90789 -10.69884 -10.28514 -9.59467 -8.21955 -6.21710 0.81938 1.26706 1.35857 1.38886 1.41872 1.48874 2.08134 2.39388 2.84884 2.94691 3.13605 3.29433 3.46990 3.61798 3.81730 3.91437 4.00582 4.01301 4.05390 4.06349 4.16143 4.34041 4.34885 4.43470 4.51002 4.54718 4.64377 4.68898 4.71288 4.79583 4.80778 4.93878 4.95598 5.02534 5.05990 5.10312 5.12002 5.30085 5.36545 5.36848 5.41263 5.48852 5.56466 5.70110 5.76832 6.16723 6.38550 6.45993 6.84687 6.97982 7.41034 7.50969 8.93427 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.001772 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.489498 B =15796.727003 C =16131.931315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.349 6.349 4 C 0.442 3.558 5 O -0.512 6.512 6 C 0.130 3.870 7 H 0.174 0.826 8 F -0.186 7.186 9 C -0.133 4.133 10 C 0.132 3.868 11 N -0.674 5.674 12 C 0.728 3.272 13 O -0.642 6.642 14 N -0.719 5.719 15 C 0.158 3.842 16 C -0.058 4.058 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.003 4.003 20 C -0.501 4.501 21 H 0.055 0.945 22 C 0.008 3.992 23 N -0.949 5.949 24 Si 0.932 3.068 25 H -0.273 1.273 26 H -0.288 1.288 27 H -0.253 1.253 28 C 0.113 3.887 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.409 0.591 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.262 0.738 49 H 0.114 0.886 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.357 -14.554 -10.297 36.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.283 3.717 5 O -0.399 6.399 6 C 0.093 3.907 7 H 0.191 0.809 8 F -0.167 7.167 9 C -0.153 4.153 10 C 0.009 3.991 11 N -0.413 5.413 12 C 0.431 3.569 13 O -0.524 6.524 14 N -0.375 5.375 15 C 0.033 3.967 16 C -0.058 4.058 17 C -0.179 4.179 18 C -0.178 4.178 19 C -0.041 4.041 20 C -0.539 4.539 21 H 0.073 0.927 22 C -0.189 4.189 23 N -0.591 5.591 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.214 1.214 27 H -0.177 1.177 28 C -0.008 4.008 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.169 0.831 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.247 0.753 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.071 0.929 49 H 0.132 0.868 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -31.294 -15.446 -10.031 36.312 hybrid contribution 1.307 -0.320 0.105 1.350 sum -29.987 -15.766 -9.926 35.303 Atomic orbital electron populations 1.21838 0.90345 1.04365 1.03967 1.23351 0.97134 0.78818 1.02791 1.86515 1.23103 1.34081 1.82864 1.24407 0.81484 0.93159 0.72697 1.90743 1.61052 1.43999 1.44154 1.21120 0.97492 0.92076 0.80015 0.80920 1.92918 1.89307 1.93336 1.41129 1.23588 0.91863 0.98278 1.01523 1.22825 0.84708 0.91480 1.00104 1.48597 1.13342 1.13670 1.65703 1.15408 0.79534 0.83742 0.78186 1.90889 1.59611 1.38584 1.63279 1.44930 1.17959 1.06596 1.68030 1.21162 0.81841 0.96417 0.97243 1.20572 0.96403 0.92067 0.96789 1.21686 1.00846 1.00155 0.95225 1.21681 0.97300 1.00923 0.97934 1.19562 0.93350 0.95598 0.95612 1.21355 1.00454 0.92404 1.39687 0.92717 1.25787 1.00503 0.96776 0.95785 1.70029 1.24321 1.17610 1.47145 0.85935 0.79584 0.80724 0.78062 1.19857 1.21390 1.17725 1.23203 0.80216 0.93916 1.03505 0.90884 0.91147 0.88515 0.91374 0.90923 0.83098 0.90085 0.91765 0.75347 0.93017 0.93195 0.91386 0.93313 0.93902 0.93747 0.93343 0.91260 0.96716 0.97014 0.92866 0.86769 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 10.29 71.98 0.74 0.17 16 2 C 0.05 0.47 6.19 71.98 0.45 0.91 16 3 O -0.35 -3.82 10.22 -51.47 -0.53 -4.34 16 4 C 0.44 5.74 7.30 71.24 0.52 6.26 16 5 O -0.51 -10.26 15.05 21.95 0.33 -9.93 16 6 C 0.13 0.96 4.00 29.85 0.12 1.08 16 7 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 8 F -0.19 -2.21 15.41 44.97 0.69 -1.52 16 9 C -0.13 -1.29 4.04 -10.46 -0.04 -1.33 16 10 C 0.13 2.63 6.48 83.18 0.54 3.17 16 11 N -0.67 -15.13 3.69 -876.52 -3.23 -18.36 16 12 C 0.73 22.94 8.79 179.06 1.57 24.51 16 13 O -0.64 -26.88 17.12 -4.00 -0.07 -26.95 16 14 N -0.72 -19.96 4.96 -478.53 -2.37 -22.34 16 15 C 0.16 5.34 4.56 86.38 0.39 5.73 16 16 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 17 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 18 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 19 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 20 C -0.50 -27.17 8.20 25.60 0.21 -26.96 16 21 H 0.05 3.17 5.92 -2.91 -0.02 3.15 16 22 C 0.01 0.45 5.47 84.65 0.46 0.92 16 23 N -0.95 -58.40 13.96 21.45 0.30 -58.11 16 24 Si 0.93 44.80 27.47 68.60 1.88 46.68 16 25 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 28 C 0.11 1.24 7.74 83.18 0.64 1.89 16 29 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 33 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 34 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.72 7.74 -2.39 -0.02 1.70 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 8.80 5.88 -92.70 -0.54 8.25 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 41 H 0.05 1.87 6.62 -2.38 -0.02 1.85 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.83 6.62 -2.38 -0.02 1.82 16 45 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 46 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 47 H 0.01 0.53 7.57 -2.39 -0.02 0.52 16 48 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 49 H 0.11 0.68 8.14 -2.38 -0.02 0.67 16 50 H 0.11 1.01 7.20 -2.39 -0.02 0.99 16 Total: -1.00 -79.68 404.06 4.18 -75.50 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.34 Total: 12.05 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.83 Total: 7.31 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -5.31 Total: -98.80 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.26 Total: -41.22 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.69 Total: -1.52 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -79.68 4.18 -75.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364637591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.935 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds