Wall clock time and date at job start Wed Apr 1 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99897 * 2 1 4 4 N 1.34783 * 119.99751 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99587 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46837 * 205.00196 * 5 4 2 7 7 C 1.53002 * 109.47128 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47190 * 59.99496 * 7 6 5 9 9 N 1.46494 * 109.46931 * 60.00480 * 8 7 6 10 10 C 1.34778 * 120.00056 * 155.00511 * 9 8 7 11 11 O 1.21280 * 119.99891 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00188 * 179.97438 * 10 9 8 13 13 H 1.09005 * 109.46984 * 59.99252 * 12 10 9 14 14 C 1.50701 * 109.46997 * 299.99566 * 12 10 9 15 15 H 1.08009 * 119.99781 * 325.09801 * 14 12 10 16 16 C 1.37874 * 120.00113 * 145.09870 * 14 12 10 17 17 N 1.31518 * 119.99776 * 184.98184 * 16 14 12 18 18 Si 1.86798 * 120.00165 * 4.98233 * 16 14 12 19 19 H 1.48493 * 109.47105 * 84.66621 * 18 16 14 20 20 H 1.48508 * 109.47193 * 204.67072 * 18 16 14 21 21 H 1.48502 * 109.46848 * 324.66647 * 18 16 14 22 22 C 1.50693 * 109.47255 * 179.97438 * 12 10 9 23 23 C 1.38236 * 120.00484 * 65.01856 * 22 12 10 24 24 C 1.38232 * 120.00112 * 179.81234 * 23 22 12 25 25 C 1.38231 * 120.00466 * 0.39391 * 24 23 22 26 26 C 1.38235 * 119.99539 * 359.86137 * 25 24 23 27 27 C 1.38237 * 120.00227 * 359.95225 * 26 25 24 28 28 C 1.52998 * 109.47014 * 300.00179 * 8 7 6 29 29 C 1.52991 * 109.47150 * 60.00197 * 28 8 7 30 30 H 1.08998 * 109.46698 * 239.99670 * 1 2 3 31 31 H 1.08999 * 109.46898 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47373 * 119.99984 * 1 2 3 33 33 H 0.96997 * 119.99970 * 0.02562 * 4 2 1 34 34 H 1.09004 * 109.47401 * 324.99519 * 5 4 2 35 35 H 1.08999 * 109.47632 * 60.00129 * 6 5 4 36 36 H 1.09000 * 109.46867 * 299.99432 * 6 5 4 37 37 H 1.09006 * 109.47207 * 299.99914 * 7 6 5 38 38 H 1.08993 * 109.47504 * 179.97438 * 7 6 5 39 39 H 1.09001 * 109.46881 * 179.97438 * 8 7 6 40 40 H 0.96996 * 119.99872 * 334.99305 * 9 8 7 41 41 H 0.97002 * 119.99976 * 180.02562 * 17 16 14 42 42 H 1.07999 * 119.99777 * 359.97438 * 23 22 12 43 43 H 1.08007 * 119.99795 * 180.23028 * 24 23 22 44 44 H 1.07993 * 120.00304 * 179.83567 * 25 24 23 45 45 H 1.08003 * 119.99881 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00027 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.46900 * 180.02562 * 28 8 7 48 48 H 1.09006 * 109.47328 * 299.99548 * 28 8 7 49 49 H 1.09005 * 109.47153 * 179.97438 * 29 28 8 50 50 H 1.08995 * 109.47752 * 59.99903 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1561 -2.4742 -0.6103 7 6 5.6861 -2.4745 -0.6092 8 6 6.1951 -2.3500 0.8283 9 7 5.7060 -3.4819 1.6192 10 6 6.3819 -3.8804 2.7151 11 8 7.3952 -3.3021 3.0462 12 6 5.8785 -5.0445 3.5291 13 1 5.8418 -5.9364 2.9035 14 6 4.4969 -4.7360 4.0457 15 1 4.2380 -3.7254 4.3252 16 6 3.5633 -5.7440 4.1616 17 7 2.3298 -5.4598 4.5187 18 14 4.0504 -7.5130 3.8117 19 1 4.6494 -8.1120 5.0313 20 1 2.8469 -8.2894 3.4187 21 1 5.0419 -7.5440 2.7067 22 6 6.8078 -5.2843 4.6909 23 6 6.9369 -4.3287 5.6815 24 6 7.7864 -4.5504 6.7492 25 6 8.5130 -5.7241 6.8223 26 6 8.3879 -6.6773 5.8290 27 6 7.5355 -6.4574 4.7632 28 6 5.6849 -1.0430 1.4386 29 6 4.1549 -1.0428 1.4375 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 1.6959 -2.0073 -0.0013 34 1 4.0095 -0.3251 -0.5888 35 1 3.7932 -2.5631 -1.6343 36 1 3.7926 -3.3164 -0.0215 37 1 6.0501 -1.6322 -1.1977 38 1 6.0496 -3.4057 -1.0436 39 1 7.2851 -2.3506 0.8291 40 1 4.8957 -3.9446 1.3543 41 1 1.6730 -6.1690 4.6006 42 1 6.3720 -3.4101 5.6225 43 1 7.8844 -3.8054 7.5250 44 1 9.1787 -5.8961 7.6551 45 1 8.9560 -7.5942 5.8859 46 1 7.4375 -7.2023 3.9875 47 1 6.0478 -0.9541 2.4625 48 1 6.0488 -0.2007 0.8501 49 1 3.7914 -0.1118 1.8727 50 1 3.7910 -1.8849 2.0260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436558982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:34 Heat of formation + Delta-G solvation = -71.204090 kcal Electronic energy + Delta-G solvation = -31091.044720 eV Core-core repulsion = 27081.847688 eV Total energy + Delta-G solvation = -4009.197032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.20941 -39.35710 -38.40491 -37.22700 -34.52877 -33.66845 -32.24957 -31.51898 -30.74178 -30.17162 -30.13088 -28.25145 -27.29431 -23.71335 -22.68052 -22.37898 -21.85441 -21.31506 -20.43535 -19.63399 -18.76533 -17.16429 -16.91433 -16.52413 -16.35964 -16.08485 -15.39151 -15.04831 -14.90765 -14.50138 -14.35756 -14.21080 -13.78235 -13.67582 -13.24733 -13.02196 -12.95007 -12.75176 -12.64906 -12.60714 -12.44401 -12.21142 -12.14855 -12.05873 -11.94320 -11.80154 -11.17536 -11.12617 -11.02757 -10.73255 -10.47608 -10.42020 -10.26165 -10.21367 -9.94440 -9.78195 -9.55455 -8.99882 -8.97870 -8.69490 -8.36569 -8.13483 -7.80988 -6.34531 -4.38061 2.15402 2.21900 2.66471 3.10645 3.18686 3.23801 3.24576 3.60157 3.96127 4.17989 4.63759 4.67428 4.77444 4.84849 4.96824 4.99696 5.18405 5.21812 5.30581 5.35911 5.49812 5.54823 5.57820 5.59393 5.61012 5.63990 5.72409 5.78628 5.86689 5.93835 5.98049 6.06545 6.12741 6.23169 6.31346 6.32444 6.38889 6.45926 6.47281 6.55432 6.67287 6.74753 6.85361 7.16062 7.18222 7.25440 7.27875 7.54048 7.58720 7.79974 8.17140 8.25248 8.31266 8.66461 9.14242 9.23970 10.76144 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.003524 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.168980 B = 7944.298968 C = 8914.571753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.510 3.490 3 O -0.552 6.552 4 N -0.725 5.725 5 C 0.147 3.853 6 C -0.129 4.129 7 C -0.120 4.120 8 C 0.144 3.856 9 N -0.721 5.721 10 C 0.536 3.464 11 O -0.562 6.562 12 C 0.017 3.983 13 H 0.071 0.929 14 C -0.507 4.507 15 H 0.082 0.918 16 C 0.086 3.914 17 N -0.883 5.883 18 Si 0.865 3.135 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.027 4.027 23 C -0.072 4.072 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.123 4.123 29 C -0.129 4.129 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.402 0.598 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.402 0.598 41 H 0.268 0.732 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 2.527 -9.737 10.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.298 3.702 3 O -0.430 6.430 4 N -0.376 5.376 5 C 0.043 3.957 6 C -0.167 4.167 7 C -0.159 4.159 8 C 0.039 3.961 9 N -0.373 5.373 10 C 0.325 3.675 11 O -0.440 6.440 12 C -0.004 4.004 13 H 0.089 0.911 14 C -0.544 4.544 15 H 0.100 0.900 16 C -0.119 4.119 17 N -0.518 5.518 18 Si 0.692 3.308 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.028 4.028 23 C -0.090 4.090 24 C -0.147 4.147 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.163 4.163 29 C -0.168 4.168 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.236 0.764 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.238 0.762 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.556 3.624 -9.469 10.258 hybrid contribution -0.646 -1.717 -0.040 1.835 sum 0.910 1.907 -9.510 9.742 Atomic orbital electron populations 1.21927 0.91988 1.05279 1.04338 1.20779 0.90544 0.83596 0.75329 1.90705 1.70930 1.31485 1.49882 1.46149 1.07489 1.08762 1.75184 1.20993 0.79032 0.98379 0.97313 1.21817 0.96347 0.97435 1.01125 1.21748 0.94806 1.02915 0.96408 1.20818 0.99247 0.86507 0.89540 1.45975 1.29665 1.33562 1.28136 1.21082 0.81932 0.85019 0.79484 1.90592 1.25784 1.58118 1.69519 1.18592 0.95759 0.94348 0.91741 0.91089 1.20518 0.91266 0.97475 1.45157 0.90009 1.24963 0.94541 0.98496 0.93908 1.69866 1.02496 1.33326 1.46160 0.87047 0.78238 0.85588 0.79954 1.19210 1.21219 1.18758 1.20072 0.92941 0.92995 0.96745 1.20830 0.96501 0.98857 0.92840 1.21035 0.97955 0.97285 0.98470 1.20855 1.01165 0.95051 0.99091 1.20881 0.99683 0.98853 0.95274 1.20971 0.97966 0.97962 0.98697 1.21838 0.95240 0.96973 1.02226 1.21881 0.95731 1.03157 0.96006 0.89165 0.89229 0.89605 0.76373 0.89832 0.91305 0.90722 0.90592 0.90860 0.89785 0.76174 0.92198 0.86574 0.87160 0.87354 0.87306 0.87485 0.90967 0.91768 0.91987 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 10.32 36.01 0.37 -1.13 16 2 C 0.51 6.46 7.90 -10.98 -0.09 6.37 16 3 O -0.55 -9.35 16.75 5.56 0.09 -9.26 16 4 N -0.72 -8.18 5.08 -53.80 -0.27 -8.45 16 5 C 0.15 1.80 2.46 -67.93 -0.17 1.63 16 6 C -0.13 -1.33 5.22 -26.73 -0.14 -1.47 16 7 C -0.12 -1.27 5.61 -26.73 -0.15 -1.42 16 8 C 0.14 2.03 2.78 -67.93 -0.19 1.84 16 9 N -0.72 -12.04 4.13 -53.81 -0.22 -12.26 16 10 C 0.54 11.03 7.00 -10.98 -0.08 10.96 16 11 O -0.56 -12.79 15.03 5.56 0.08 -12.70 16 12 C 0.02 0.37 1.89 -94.08 -0.18 0.20 16 13 H 0.07 1.53 4.89 -51.93 -0.25 1.27 16 14 C -0.51 -12.40 8.07 -34.44 -0.28 -12.68 16 15 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 16 C 0.09 2.16 5.47 -17.82 -0.10 2.07 16 17 N -0.88 -23.82 13.96 55.43 0.77 -23.05 16 18 Si 0.86 19.26 27.18 -169.99 -4.62 14.64 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.26 -5.42 6.06 56.52 0.34 -5.08 16 22 C -0.03 -0.58 4.09 -104.63 -0.43 -1.01 16 23 C -0.07 -1.56 8.25 -39.58 -0.33 -1.89 16 24 C -0.13 -2.44 10.05 -39.59 -0.40 -2.84 16 25 C -0.14 -2.51 10.05 -39.58 -0.40 -2.91 16 26 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 27 C -0.14 -2.78 9.46 -39.58 -0.37 -3.15 16 28 C -0.12 -1.80 5.60 -26.74 -0.15 -1.95 16 29 C -0.13 -1.90 5.34 -26.74 -0.14 -2.05 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 3.67 8.60 -40.82 -0.35 3.32 16 34 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.82 6.50 -51.93 -0.34 0.48 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 40 H 0.40 6.43 6.75 -40.82 -0.28 6.15 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.12 2.61 7.93 -52.49 -0.42 2.19 16 43 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 46 H 0.11 2.00 7.95 -52.49 -0.42 1.58 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.08 1.36 7.60 -51.93 -0.39 0.97 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -31.41 401.18 -9.65 -41.06 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.92 Total: 16.13 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.61 Total: -12.15 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.28 Total: -43.76 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.18 Total: -21.96 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.62 Total: 14.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.41 -9.65 -41.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436558982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.143 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds