Wall clock time and date at job start Wed Apr 1 2020 03:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99897 * 2 1 4 4 N 1.34783 * 119.99751 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99587 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46837 * 205.00196 * 5 4 2 7 7 C 1.53002 * 109.47128 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47190 * 59.99496 * 7 6 5 9 9 N 1.46494 * 109.46931 * 60.00480 * 8 7 6 10 10 C 1.34778 * 120.00056 * 155.00511 * 9 8 7 11 11 O 1.21280 * 119.99891 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00188 * 179.97438 * 10 9 8 13 13 H 1.09005 * 109.46984 * 59.99252 * 12 10 9 14 14 C 1.50701 * 109.46997 * 299.99566 * 12 10 9 15 15 H 1.08009 * 119.99781 * 325.09801 * 14 12 10 16 16 C 1.37874 * 120.00113 * 145.09870 * 14 12 10 17 17 N 1.31518 * 119.99776 * 184.98184 * 16 14 12 18 18 Si 1.86798 * 120.00165 * 4.98233 * 16 14 12 19 19 H 1.48493 * 109.47105 * 84.66621 * 18 16 14 20 20 H 1.48508 * 109.47193 * 204.67072 * 18 16 14 21 21 H 1.48502 * 109.46848 * 324.66647 * 18 16 14 22 22 C 1.50693 * 109.47255 * 179.97438 * 12 10 9 23 23 C 1.38236 * 120.00484 * 65.01856 * 22 12 10 24 24 C 1.38232 * 120.00112 * 179.81234 * 23 22 12 25 25 C 1.38231 * 120.00466 * 0.39391 * 24 23 22 26 26 C 1.38235 * 119.99539 * 359.86137 * 25 24 23 27 27 C 1.38237 * 120.00227 * 359.95225 * 26 25 24 28 28 C 1.52998 * 109.47014 * 300.00179 * 8 7 6 29 29 C 1.52991 * 109.47150 * 60.00197 * 28 8 7 30 30 H 1.08998 * 109.46698 * 239.99670 * 1 2 3 31 31 H 1.08999 * 109.46898 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47373 * 119.99984 * 1 2 3 33 33 H 0.96997 * 119.99970 * 0.02562 * 4 2 1 34 34 H 1.09004 * 109.47401 * 324.99519 * 5 4 2 35 35 H 1.08999 * 109.47632 * 60.00129 * 6 5 4 36 36 H 1.09000 * 109.46867 * 299.99432 * 6 5 4 37 37 H 1.09006 * 109.47207 * 299.99914 * 7 6 5 38 38 H 1.08993 * 109.47504 * 179.97438 * 7 6 5 39 39 H 1.09001 * 109.46881 * 179.97438 * 8 7 6 40 40 H 0.96996 * 119.99872 * 334.99305 * 9 8 7 41 41 H 0.97002 * 119.99976 * 180.02562 * 17 16 14 42 42 H 1.07999 * 119.99777 * 359.97438 * 23 22 12 43 43 H 1.08007 * 119.99795 * 180.23028 * 24 23 22 44 44 H 1.07993 * 120.00304 * 179.83567 * 25 24 23 45 45 H 1.08003 * 119.99881 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00027 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.46900 * 180.02562 * 28 8 7 48 48 H 1.09006 * 109.47328 * 299.99548 * 28 8 7 49 49 H 1.09005 * 109.47153 * 179.97438 * 29 28 8 50 50 H 1.08995 * 109.47752 * 59.99903 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1561 -2.4742 -0.6103 7 6 5.6861 -2.4745 -0.6092 8 6 6.1951 -2.3500 0.8283 9 7 5.7060 -3.4819 1.6192 10 6 6.3819 -3.8804 2.7151 11 8 7.3952 -3.3021 3.0462 12 6 5.8785 -5.0445 3.5291 13 1 5.8418 -5.9364 2.9035 14 6 4.4969 -4.7360 4.0457 15 1 4.2380 -3.7254 4.3252 16 6 3.5633 -5.7440 4.1616 17 7 2.3298 -5.4598 4.5187 18 14 4.0504 -7.5130 3.8117 19 1 4.6494 -8.1120 5.0313 20 1 2.8469 -8.2894 3.4187 21 1 5.0419 -7.5440 2.7067 22 6 6.8078 -5.2843 4.6909 23 6 6.9369 -4.3287 5.6815 24 6 7.7864 -4.5504 6.7492 25 6 8.5130 -5.7241 6.8223 26 6 8.3879 -6.6773 5.8290 27 6 7.5355 -6.4574 4.7632 28 6 5.6849 -1.0430 1.4386 29 6 4.1549 -1.0428 1.4375 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 1.6959 -2.0073 -0.0013 34 1 4.0095 -0.3251 -0.5888 35 1 3.7932 -2.5631 -1.6343 36 1 3.7926 -3.3164 -0.0215 37 1 6.0501 -1.6322 -1.1977 38 1 6.0496 -3.4057 -1.0436 39 1 7.2851 -2.3506 0.8291 40 1 4.8957 -3.9446 1.3543 41 1 1.6730 -6.1690 4.6006 42 1 6.3720 -3.4101 5.6225 43 1 7.8844 -3.8054 7.5250 44 1 9.1787 -5.8961 7.6551 45 1 8.9560 -7.5942 5.8859 46 1 7.4375 -7.2023 3.9875 47 1 6.0478 -0.9541 2.4625 48 1 6.0488 -0.2007 0.8501 49 1 3.7914 -0.1118 1.8727 50 1 3.7910 -1.8849 2.0260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436558982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:33 Heat of formation + Delta-G solvation = -91.137551 kcal Electronic energy + Delta-G solvation = -31091.909100 eV Core-core repulsion = 27081.847688 eV Total energy + Delta-G solvation = -4010.061411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46042 -40.70110 -39.75631 -38.61593 -35.72647 -35.49568 -33.61770 -33.22510 -31.82800 -31.63231 -31.16781 -29.57932 -28.63451 -25.52502 -23.78079 -23.60010 -23.33211 -22.69800 -21.50219 -21.08455 -20.08802 -19.08007 -18.15104 -17.81644 -17.57348 -17.45480 -16.66174 -16.45906 -16.15285 -15.94608 -15.86562 -15.57321 -15.13213 -14.82171 -14.71105 -14.65912 -14.32911 -14.13884 -13.93761 -13.77541 -13.70637 -13.42318 -13.31724 -13.23760 -13.08465 -12.95391 -12.91573 -12.71064 -12.15378 -12.03266 -11.95341 -11.94377 -11.62840 -11.49297 -11.38438 -11.35961 -10.87740 -10.86082 -10.46245 -10.06983 -9.80099 -9.64984 -9.36498 -8.31660 -6.39026 0.63865 0.70530 1.33278 1.42095 1.44940 1.66207 1.94036 2.30845 2.31513 2.55320 2.99070 3.16655 3.68030 3.72557 3.91856 4.00538 4.09681 4.11300 4.21772 4.22167 4.29582 4.37681 4.38805 4.45896 4.48214 4.50865 4.57123 4.61116 4.66112 4.67409 4.81795 4.83877 4.90199 5.00416 5.04691 5.10189 5.17277 5.18351 5.21779 5.31379 5.32654 5.35528 5.42248 5.57815 5.69207 5.73086 5.80416 5.95314 6.22690 6.30785 6.60928 6.62689 6.78953 7.25505 7.29080 7.54800 8.82393 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.003524 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.168980 B = 7944.298968 C = 8914.571753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.601 6.601 4 N -0.717 5.717 5 C 0.152 3.848 6 C -0.121 4.121 7 C -0.111 4.111 8 C 0.143 3.857 9 N -0.708 5.708 10 C 0.532 3.468 11 O -0.588 6.588 12 C 0.020 3.980 13 H 0.080 0.920 14 C -0.494 4.494 15 H 0.035 0.965 16 C 0.041 3.959 17 N -0.927 5.927 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.233 1.233 22 C -0.054 4.054 23 C -0.103 4.103 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.153 4.153 28 C -0.119 4.119 29 C -0.119 4.119 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.414 0.586 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.407 0.593 41 H 0.269 0.731 42 H 0.086 0.914 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.122 0.878 47 H 0.034 0.966 48 H 0.085 0.915 49 H 0.037 0.963 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 0.057 -11.439 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.291 3.709 3 O -0.483 6.483 4 N -0.368 5.368 5 C 0.047 3.953 6 C -0.159 4.159 7 C -0.149 4.149 8 C 0.038 3.962 9 N -0.359 5.359 10 C 0.320 3.680 11 O -0.469 6.469 12 C -0.002 4.002 13 H 0.097 0.903 14 C -0.532 4.532 15 H 0.053 0.947 16 C -0.160 4.160 17 N -0.565 5.565 18 Si 0.743 3.257 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.157 1.157 22 C -0.055 4.055 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.143 4.143 27 C -0.171 4.171 28 C -0.158 4.158 29 C -0.158 4.158 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.150 0.850 44 H 0.167 0.833 45 H 0.166 0.834 46 H 0.140 0.860 47 H 0.053 0.947 48 H 0.103 0.897 49 H 0.056 0.944 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.653 1.134 -11.208 11.574 hybrid contribution -0.952 -0.835 0.607 1.404 sum 1.701 0.299 -10.601 10.741 Atomic orbital electron populations 1.21932 0.88579 1.05928 1.06225 1.21576 0.92271 0.82984 0.74064 1.90680 1.72226 1.33167 1.52242 1.46134 1.07209 1.09237 1.74270 1.20890 0.79750 0.99626 0.95016 1.21791 0.96099 0.95561 1.02479 1.21741 0.94812 1.04884 0.93466 1.21004 0.98835 0.84825 0.91521 1.45928 1.29105 1.33766 1.27149 1.20952 0.81952 0.84854 0.80252 1.90565 1.27131 1.58834 1.70407 1.18525 0.94248 0.95094 0.92285 0.90250 1.20366 0.92940 0.95327 1.44531 0.94716 1.25627 0.94211 1.02350 0.93811 1.69993 1.03719 1.34614 1.48126 0.86163 0.78655 0.80475 0.80383 1.19928 1.20804 1.15658 1.20133 0.94402 0.94275 0.96726 1.20793 0.98222 0.98322 0.94852 1.21346 0.97220 0.98771 0.97961 1.21330 1.00509 0.93758 0.99949 1.21370 0.98637 1.00205 0.94048 1.21252 0.98336 0.97397 1.00147 1.21778 0.95079 0.98466 1.00506 1.21744 0.95813 1.00539 0.97729 0.88167 0.89288 0.86563 0.74895 0.90243 0.88250 0.91313 0.88347 0.89031 0.90624 0.75635 0.92132 0.89616 0.85048 0.83316 0.83390 0.85992 0.94720 0.89696 0.94428 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.32 71.24 0.74 -1.90 16 2 C 0.50 12.63 7.90 87.66 0.69 13.33 16 3 O -0.60 -20.92 16.75 -3.02 -0.05 -20.97 16 4 N -0.72 -15.83 5.08 -442.52 -2.25 -18.08 16 5 C 0.15 3.66 2.46 44.99 0.11 3.78 16 6 C -0.12 -2.24 5.22 30.60 0.16 -2.08 16 7 C -0.11 -2.08 5.61 30.60 0.17 -1.91 16 8 C 0.14 4.03 2.78 44.99 0.13 4.16 16 9 N -0.71 -24.23 4.13 -442.54 -1.83 -26.05 16 10 C 0.53 22.73 7.00 87.66 0.61 23.34 16 11 O -0.59 -28.01 15.03 -3.03 -0.05 -28.06 16 12 C 0.02 0.89 1.89 -13.03 -0.02 0.87 16 13 H 0.08 3.35 4.89 -2.38 -0.01 3.34 16 14 C -0.49 -25.41 8.07 25.60 0.21 -25.21 16 15 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 16 C 0.04 2.10 5.47 84.65 0.46 2.56 16 17 N -0.93 -51.78 13.96 21.45 0.30 -51.49 16 18 Si 0.92 39.17 27.18 68.60 1.86 41.04 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.23 -8.74 6.06 99.48 0.60 -8.14 16 22 C -0.05 -2.42 4.09 -19.87 -0.08 -2.50 16 23 C -0.10 -4.66 8.25 22.27 0.18 -4.47 16 24 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 25 C -0.14 -4.40 10.05 22.27 0.22 -4.17 16 26 C -0.12 -4.07 10.05 22.27 0.22 -3.84 16 27 C -0.15 -5.90 9.46 22.27 0.21 -5.69 16 28 C -0.12 -3.68 5.60 30.59 0.17 -3.50 16 29 C -0.12 -3.76 5.34 30.59 0.16 -3.59 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.41 7.07 8.60 -92.71 -0.80 6.27 16 34 H 0.08 2.05 7.58 -2.39 -0.02 2.03 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.39 6.50 -2.39 -0.02 1.37 16 37 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 40 H 0.41 13.13 6.75 -92.71 -0.63 12.50 16 41 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.09 4.23 7.93 -2.91 -0.02 4.21 16 43 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 46 H 0.12 4.22 7.95 -2.91 -0.02 4.19 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 49 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.05 1.92 7.60 -2.39 -0.02 1.90 16 Total: -1.00 -73.89 401.18 1.99 -71.90 By element: Atomic # 1 Polarization: 47.91 SS G_CDS: -0.57 Total: 47.34 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.57 Total: -15.64 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.78 Total: -95.62 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.10 Total: -49.02 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.86 Total: 41.04 kcal Total: -73.89 1.99 -71.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436558982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.236 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds