Wall clock time and date at job start Wed Apr 1 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47097 * 2 1 4 4 C 1.42902 * 114.00113 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47432 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47672 * 179.97438 * 6 5 4 8 8 C 1.46897 * 111.00424 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.45628 * 324.97080 * 8 7 6 10 10 C 1.53070 * 109.45388 * 84.78971 * 8 7 6 11 11 C 1.53195 * 109.29524 * 181.24480 * 10 8 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 8 13 13 C 1.34784 * 120.63188 * 233.51696 * 12 11 10 14 14 O 1.21280 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99526 * 359.97438 * 13 12 11 16 16 S 1.81003 * 109.46503 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99581 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99586 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00475 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47038 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46988 * 120.00102 * 21 19 17 24 24 H 1.48503 * 109.47103 * 239.99968 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.46197 * 205.00240 * 8 7 6 27 27 H 1.09002 * 109.49876 * 58.66112 * 26 8 7 28 28 C 1.52998 * 109.49648 * 298.56602 * 26 8 7 29 29 H 1.08997 * 109.47574 * 300.00046 * 1 2 3 30 30 H 1.08997 * 109.47289 * 60.00350 * 1 2 3 31 31 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47097 * 239.99767 * 2 1 3 33 33 H 1.09008 * 109.46768 * 120.00125 * 2 1 3 34 34 H 1.09000 * 109.46758 * 59.99550 * 4 3 2 35 35 H 1.09004 * 109.47108 * 300.00247 * 4 3 2 36 36 H 1.08998 * 109.47292 * 59.99616 * 5 4 3 37 37 H 1.09010 * 109.47086 * 299.99706 * 5 4 3 38 38 H 1.08998 * 109.47341 * 59.99468 * 6 5 4 39 39 H 1.09004 * 109.46908 * 300.00075 * 6 5 4 40 40 H 1.00899 * 110.99764 * 56.04281 * 7 6 5 41 41 H 1.08997 * 109.38860 * 61.36667 * 10 8 7 42 42 H 1.09003 * 109.62046 * 301.26010 * 10 8 7 43 43 H 1.09002 * 109.58720 * 185.71834 * 11 10 8 44 44 H 1.08996 * 109.58651 * 65.43731 * 11 10 8 45 45 H 1.08996 * 109.47104 * 299.99859 * 15 13 12 46 46 H 1.08994 * 109.47167 * 60.00297 * 15 13 12 47 47 H 0.96998 * 120.00061 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 49 49 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 50 50 H 1.08997 * 109.47256 * 300.15605 * 28 26 8 51 51 H 1.09000 * 109.47485 * 60.15968 * 28 26 8 52 52 H 1.09005 * 109.47116 * 180.16184 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3505 3.0591 -0.0012 7 7 5.7294 4.4784 -0.0011 8 6 7.1901 4.6335 -0.0017 9 1 7.6403 3.8347 0.5880 10 6 7.7103 4.5571 -1.4393 11 6 9.2367 4.6881 -1.4329 12 7 9.6056 5.9182 -0.7193 13 6 10.4075 6.8338 -1.2984 14 8 10.7052 7.8450 -0.6986 15 6 10.9351 6.6003 -2.6906 16 16 11.9743 7.9978 -3.1841 17 6 12.4414 7.4756 -4.8009 18 1 12.0833 6.5334 -5.1886 19 6 13.2705 8.2749 -5.5757 20 7 13.7073 9.4231 -5.1030 21 14 13.7663 7.7211 -7.2895 22 1 13.1471 6.4035 -7.5823 23 1 13.3019 8.7193 -8.2859 24 1 15.2446 7.5999 -7.3622 25 6 9.0843 6.1311 0.6377 26 6 7.5594 5.9876 0.6082 27 1 7.1686 6.0479 1.6240 28 6 6.9571 7.1104 -0.2387 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.8332 0.9766 -0.8908 35 1 3.8340 0.9764 0.8892 36 1 3.4230 3.4213 0.8905 37 1 3.4222 3.4224 -0.8895 38 1 5.7526 2.5762 -0.8918 39 1 5.7541 2.5750 0.8882 40 1 5.3149 4.9632 0.7807 41 1 7.2779 5.3690 -2.0241 42 1 7.4290 3.6007 -1.8800 43 1 9.6035 4.7363 -2.4582 44 1 9.6751 3.8273 -0.9282 45 1 11.5264 5.6849 -2.7063 46 1 10.0999 6.5054 -3.3845 47 1 14.2864 9.9818 -5.6447 48 1 9.5083 5.3878 1.3129 49 1 9.3528 7.1307 0.9797 50 1 7.3473 7.0486 -1.2546 51 1 5.8721 7.0079 -0.2595 52 1 7.2228 8.0748 0.1944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482416452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:17 Heat of formation + Delta-G solvation = -95.810537 kcal Electronic energy + Delta-G solvation = -27727.856395 eV Core-core repulsion = 23853.036299 eV Total energy + Delta-G solvation = -3874.820096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30357 -38.67391 -38.07328 -35.88252 -33.71450 -32.47094 -32.41749 -31.36772 -30.01215 -29.31053 -26.59873 -25.59610 -25.30000 -23.72789 -23.25090 -22.72974 -21.66061 -20.15523 -18.51687 -17.70093 -17.16713 -16.93417 -16.74938 -15.94985 -15.62272 -15.45933 -15.41851 -15.01208 -14.79490 -14.68139 -14.39529 -13.91656 -13.81335 -13.67625 -13.21918 -13.09068 -12.98232 -12.79319 -12.54879 -12.25847 -12.20901 -12.05110 -11.90703 -11.81284 -11.71580 -11.41703 -11.39252 -11.27873 -11.15715 -11.06282 -11.00027 -10.74481 -10.62378 -10.47367 -10.05563 -9.77952 -9.31277 -9.06371 -8.76108 -8.47756 -8.20225 -6.48458 -6.20624 -3.90873 2.96079 3.05261 3.12022 3.22226 3.27280 3.31981 3.62066 3.86226 4.21172 4.41584 4.50679 4.53279 4.57679 4.63126 4.77552 4.83622 4.85329 4.89255 4.95505 4.97486 5.01886 5.05158 5.11181 5.14678 5.21282 5.28917 5.31301 5.36705 5.42026 5.46825 5.54745 5.60890 5.63270 5.69728 5.72818 5.77462 5.80837 5.84120 5.90249 5.97387 6.04912 6.12166 6.14157 6.40751 6.68211 6.69516 6.77442 7.04485 7.59163 7.61419 8.36506 8.59851 9.24878 10.86872 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.001758 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.683092 B =15926.255275 C =17184.891754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.117 4.117 6 C 0.063 3.937 7 N -0.682 5.682 8 C 0.095 3.905 9 H 0.044 0.956 10 C -0.125 4.125 11 C 0.108 3.892 12 N -0.617 5.617 13 C 0.536 3.464 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.119 3.881 26 C -0.105 4.105 27 H 0.076 0.924 28 C -0.139 4.139 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.342 0.658 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.061 0.939 51 H 0.060 0.940 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.232 -19.315 12.973 32.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.067 4.067 7 N -0.313 5.313 8 C -0.014 4.014 9 H 0.062 0.938 10 C -0.164 4.164 11 C -0.016 4.016 12 N -0.353 5.353 13 C 0.324 3.676 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.005 4.005 26 C -0.125 4.125 27 H 0.094 0.906 28 C -0.196 4.196 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.161 0.839 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.851 -17.423 13.150 30.886 hybrid contribution 0.338 -2.210 -0.883 2.404 sum -21.513 -19.633 12.266 31.603 Atomic orbital electron populations 1.21748 0.93672 1.02286 1.03229 1.22459 0.95689 0.83762 1.00043 1.87883 1.21186 1.26479 1.95436 1.22423 0.81234 0.97499 1.00122 1.21455 0.95196 0.94756 1.04038 1.21866 0.94514 0.89586 1.00718 1.60437 1.09269 1.11416 1.50190 1.21498 0.87109 0.96265 0.96552 0.93803 1.21983 0.94609 1.03111 0.96659 1.21716 0.94894 0.86669 0.98326 1.48048 1.50181 1.20907 1.16181 1.20306 0.77349 0.82245 0.87689 1.90686 1.57121 1.26878 1.64460 1.23552 1.04148 1.07120 0.95284 1.85404 1.58397 1.21549 1.18131 1.22903 1.35584 1.08853 1.00904 0.90913 1.24984 0.95170 0.94561 0.98834 1.70025 1.32302 1.10736 1.37214 0.86129 0.78345 0.78685 0.82407 1.19622 1.20563 1.20589 1.21526 0.91896 1.03368 0.83671 1.21663 0.96039 0.95239 0.99563 0.90574 1.21748 1.00597 0.96827 1.00470 0.91847 0.91753 0.91080 0.93376 0.93495 0.93191 0.93540 0.91278 0.90059 0.90727 0.95258 0.83946 0.90037 0.91078 0.89031 0.91812 0.89366 0.89280 0.92253 0.92124 0.88570 0.91999 0.92056 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.34 6.66 37.16 0.25 0.59 16 3 O -0.39 -3.30 10.34 -35.23 -0.36 -3.67 16 4 C 0.06 0.43 5.94 37.15 0.22 0.65 16 5 C -0.12 -0.78 5.84 -26.74 -0.16 -0.94 16 6 C 0.06 0.41 5.48 -3.83 -0.02 0.39 16 7 N -0.68 -5.18 5.63 -106.67 -0.60 -5.78 16 8 C 0.10 0.80 2.14 -67.66 -0.14 0.66 16 9 H 0.04 0.36 7.80 -51.92 -0.40 -0.05 16 10 C -0.12 -1.18 5.25 -26.59 -0.14 -1.32 16 11 C 0.11 1.18 6.34 -3.71 -0.02 1.15 16 12 N -0.62 -8.64 2.41 -172.77 -0.42 -9.06 16 13 C 0.54 10.20 7.72 -10.98 -0.08 10.11 16 14 O -0.52 -11.82 15.27 5.56 0.08 -11.73 16 15 C -0.15 -3.07 4.50 36.01 0.16 -2.91 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.12 1.42 5.83 -3.71 -0.02 1.40 16 26 C -0.11 -0.99 2.59 -90.50 -0.23 -1.23 16 27 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 28 C -0.14 -1.55 8.56 37.16 0.32 -1.23 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.24 8.14 -51.92 -0.42 -0.19 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.07 0.50 7.41 -51.93 -0.38 0.12 16 39 H 0.03 0.18 8.05 -51.93 -0.42 -0.24 16 40 H 0.34 2.36 8.25 -39.29 -0.32 2.03 16 41 H 0.08 0.92 6.35 -51.93 -0.33 0.59 16 42 H 0.07 0.59 7.42 -51.93 -0.39 0.21 16 43 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 46 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 1.35 7.00 -51.92 -0.36 0.98 16 50 H 0.06 0.82 5.98 -51.93 -0.31 0.51 16 51 H 0.06 0.61 7.59 -51.93 -0.39 0.22 16 52 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 419.79 15.07 6.33 6.33 Total: -1.00 -34.02 419.79 -10.24 -44.26 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -9.47 Total: -1.39 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 0.70 Total: -6.00 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.28 Total: -40.33 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.28 Total: -15.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.02 -10.24 -44.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482416452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.549 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds