Wall clock time and date at job start Wed Apr 1 2020 03:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47097 * 2 1 4 4 C 1.42902 * 114.00113 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47432 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47672 * 179.97438 * 6 5 4 8 8 C 1.46897 * 111.00424 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.45628 * 324.97080 * 8 7 6 10 10 C 1.53070 * 109.45388 * 84.78971 * 8 7 6 11 11 C 1.53195 * 109.29524 * 181.24480 * 10 8 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 8 13 13 C 1.34784 * 120.63188 * 233.51696 * 12 11 10 14 14 O 1.21280 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99526 * 359.97438 * 13 12 11 16 16 S 1.81003 * 109.46503 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99581 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99586 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00475 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47038 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46988 * 120.00102 * 21 19 17 24 24 H 1.48503 * 109.47103 * 239.99968 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.46197 * 205.00240 * 8 7 6 27 27 H 1.09002 * 109.49876 * 58.66112 * 26 8 7 28 28 C 1.52998 * 109.49648 * 298.56602 * 26 8 7 29 29 H 1.08997 * 109.47574 * 300.00046 * 1 2 3 30 30 H 1.08997 * 109.47289 * 60.00350 * 1 2 3 31 31 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47097 * 239.99767 * 2 1 3 33 33 H 1.09008 * 109.46768 * 120.00125 * 2 1 3 34 34 H 1.09000 * 109.46758 * 59.99550 * 4 3 2 35 35 H 1.09004 * 109.47108 * 300.00247 * 4 3 2 36 36 H 1.08998 * 109.47292 * 59.99616 * 5 4 3 37 37 H 1.09010 * 109.47086 * 299.99706 * 5 4 3 38 38 H 1.08998 * 109.47341 * 59.99468 * 6 5 4 39 39 H 1.09004 * 109.46908 * 300.00075 * 6 5 4 40 40 H 1.00899 * 110.99764 * 56.04281 * 7 6 5 41 41 H 1.08997 * 109.38860 * 61.36667 * 10 8 7 42 42 H 1.09003 * 109.62046 * 301.26010 * 10 8 7 43 43 H 1.09002 * 109.58720 * 185.71834 * 11 10 8 44 44 H 1.08996 * 109.58651 * 65.43731 * 11 10 8 45 45 H 1.08996 * 109.47104 * 299.99859 * 15 13 12 46 46 H 1.08994 * 109.47167 * 60.00297 * 15 13 12 47 47 H 0.96998 * 120.00061 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 49 49 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 50 50 H 1.08997 * 109.47256 * 300.15605 * 28 26 8 51 51 H 1.09000 * 109.47485 * 60.15968 * 28 26 8 52 52 H 1.09005 * 109.47116 * 180.16184 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3505 3.0591 -0.0012 7 7 5.7294 4.4784 -0.0011 8 6 7.1901 4.6335 -0.0017 9 1 7.6403 3.8347 0.5880 10 6 7.7103 4.5571 -1.4393 11 6 9.2367 4.6881 -1.4329 12 7 9.6056 5.9182 -0.7193 13 6 10.4075 6.8338 -1.2984 14 8 10.7052 7.8450 -0.6986 15 6 10.9351 6.6003 -2.6906 16 16 11.9743 7.9978 -3.1841 17 6 12.4414 7.4756 -4.8009 18 1 12.0833 6.5334 -5.1886 19 6 13.2705 8.2749 -5.5757 20 7 13.7073 9.4231 -5.1030 21 14 13.7663 7.7211 -7.2895 22 1 13.1471 6.4035 -7.5823 23 1 13.3019 8.7193 -8.2859 24 1 15.2446 7.5999 -7.3622 25 6 9.0843 6.1311 0.6377 26 6 7.5594 5.9876 0.6082 27 1 7.1686 6.0479 1.6240 28 6 6.9571 7.1104 -0.2387 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.8332 0.9766 -0.8908 35 1 3.8340 0.9764 0.8892 36 1 3.4230 3.4213 0.8905 37 1 3.4222 3.4224 -0.8895 38 1 5.7526 2.5762 -0.8918 39 1 5.7541 2.5750 0.8882 40 1 5.3149 4.9632 0.7807 41 1 7.2779 5.3690 -2.0241 42 1 7.4290 3.6007 -1.8800 43 1 9.6035 4.7363 -2.4582 44 1 9.6751 3.8273 -0.9282 45 1 11.5264 5.6849 -2.7063 46 1 10.0999 6.5054 -3.3845 47 1 14.2864 9.9818 -5.6447 48 1 9.5083 5.3878 1.3129 49 1 9.3528 7.1307 0.9797 50 1 7.3473 7.0486 -1.2546 51 1 5.8721 7.0079 -0.2595 52 1 7.2228 8.0748 0.1944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482416452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:16 Heat of formation + Delta-G solvation = -118.067796 kcal Electronic energy + Delta-G solvation = -27728.821542 eV Core-core repulsion = 23853.036299 eV Total energy + Delta-G solvation = -3875.785243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41209 -39.41898 -38.98062 -36.73553 -34.63738 -34.57940 -33.17619 -32.02604 -31.02417 -30.47303 -27.81939 -27.42234 -26.15902 -24.57420 -23.68933 -23.50967 -22.19198 -21.36730 -19.84864 -19.25775 -18.19856 -17.67688 -17.39268 -16.95806 -16.87072 -16.75905 -16.41616 -16.14383 -15.94497 -15.59089 -15.39944 -15.13489 -14.72910 -14.65222 -14.44887 -14.18070 -13.89657 -13.64748 -13.50018 -13.42256 -13.15831 -12.92621 -12.91196 -12.86358 -12.72521 -12.60767 -12.48208 -12.44938 -12.13649 -12.06993 -11.89126 -11.74279 -11.69087 -11.48440 -11.25263 -11.15894 -10.81314 -10.54321 -10.25703 -9.65675 -9.31360 -8.67090 -8.34680 -6.12903 1.26142 1.41331 1.46201 1.57438 1.59644 2.12696 2.27378 2.61328 2.99595 3.23517 3.28874 3.59762 3.73903 3.86725 4.01542 4.02739 4.13921 4.16609 4.20113 4.24366 4.27637 4.28019 4.41358 4.43882 4.49002 4.49219 4.51847 4.54034 4.62361 4.69201 4.74857 4.79161 4.79675 4.85524 4.88331 4.98777 5.02119 5.09205 5.16519 5.20301 5.23837 5.28238 5.31435 5.41942 5.49912 5.62397 6.12262 6.19987 6.29978 6.31167 6.50523 7.06663 7.16931 8.74893 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.001758 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.683092 B =15926.255275 C =17184.891754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.416 6.416 4 C 0.063 3.937 5 C -0.110 4.110 6 C 0.068 3.932 7 N -0.689 5.689 8 C 0.103 3.897 9 H 0.061 0.939 10 C -0.120 4.120 11 C 0.101 3.899 12 N -0.602 5.602 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.124 4.124 16 S -0.152 6.152 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.114 3.886 26 C -0.096 4.096 27 H 0.102 0.898 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.348 0.652 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.271 0.729 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.036 0.964 51 H 0.073 0.927 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.385 -22.716 12.981 35.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.336 6.336 4 C -0.014 4.014 5 C -0.148 4.148 6 C -0.061 4.061 7 N -0.321 5.321 8 C -0.006 4.006 9 H 0.079 0.921 10 C -0.158 4.158 11 C -0.021 4.021 12 N -0.336 5.336 13 C 0.321 3.679 14 O -0.446 6.446 15 C -0.275 4.275 16 S 0.075 5.925 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.009 4.009 26 C -0.115 4.115 27 H 0.120 0.880 28 C -0.192 4.192 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.167 0.833 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.088 0.912 50 H 0.055 0.945 51 H 0.092 0.908 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.051 -20.880 13.176 33.778 hybrid contribution 0.572 -1.229 -0.791 1.570 sum -22.479 -22.109 12.385 33.874 Atomic orbital electron populations 1.21776 0.93240 1.03303 1.02582 1.22632 0.96167 0.82955 1.00840 1.87852 1.22211 1.27973 1.95611 1.22490 0.80611 0.97398 1.00916 1.21367 0.95445 0.94850 1.03096 1.21828 0.94094 0.88868 1.01292 1.60377 1.08629 1.12358 1.50766 1.21380 0.87810 0.95705 0.95749 0.92129 1.21927 0.93155 1.03316 0.97426 1.22012 0.96265 0.85778 0.98088 1.48040 1.48083 1.20584 1.16912 1.20073 0.78142 0.82571 0.87093 1.90668 1.59448 1.29115 1.65334 1.23367 1.03293 1.04126 0.96678 1.85582 1.60849 1.26801 1.19246 1.23227 1.35825 1.09277 1.00948 0.89956 1.26121 0.94877 0.94424 1.03641 1.70189 1.33159 1.12239 1.39216 0.84909 0.78103 0.78783 0.76172 1.17973 1.19953 1.19875 1.21736 0.93768 1.02816 0.82541 1.21611 0.93873 0.95304 1.00730 0.88037 1.21692 1.01381 0.96945 0.99201 0.92352 0.92514 0.89261 0.92707 0.92497 0.92642 0.92407 0.91499 0.91704 0.90639 0.94028 0.83295 0.92095 0.89148 0.89550 0.88987 0.87518 0.87846 0.91996 0.89485 0.91195 0.94495 0.90827 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.53 6.66 71.98 0.48 1.01 16 3 O -0.42 -6.52 10.34 -148.98 -1.54 -8.07 16 4 C 0.06 0.70 5.94 71.98 0.43 1.13 16 5 C -0.11 -1.26 5.84 30.59 0.18 -1.08 16 6 C 0.07 0.67 5.48 86.30 0.47 1.15 16 7 N -0.69 -8.44 5.63 -491.39 -2.77 -11.21 16 8 C 0.10 1.40 2.14 44.95 0.10 1.49 16 9 H 0.06 0.69 7.80 -2.38 -0.02 0.67 16 10 C -0.12 -1.94 5.25 30.68 0.16 -1.78 16 11 C 0.10 1.94 6.34 86.36 0.55 2.49 16 12 N -0.60 -16.19 2.41 -818.90 -1.98 -18.16 16 13 C 0.53 20.55 7.72 87.66 0.68 21.23 16 14 O -0.57 -27.04 15.27 -3.03 -0.05 -27.09 16 15 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 16 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 17 C -0.54 -31.43 9.50 67.95 0.65 -30.78 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 21 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C 0.11 2.55 5.83 86.36 0.50 3.05 16 26 C -0.10 -1.59 2.59 -10.72 -0.03 -1.62 16 27 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 28 C -0.13 -2.94 8.56 71.98 0.62 -2.32 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.08 0.76 7.41 -2.39 -0.02 0.74 16 39 H 0.04 0.34 8.05 -2.39 -0.02 0.32 16 40 H 0.35 3.75 8.25 -89.69 -0.74 3.01 16 41 H 0.06 1.28 6.35 -2.39 -0.02 1.27 16 42 H 0.09 1.17 7.42 -2.39 -0.02 1.15 16 43 H 0.09 1.77 5.93 -2.39 -0.01 1.75 16 44 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 3.95 7.94 -2.40 -0.02 3.93 16 46 H 0.10 3.91 7.69 -2.40 -0.02 3.89 16 47 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 48 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.07 1.98 7.00 -2.38 -0.02 1.96 16 50 H 0.04 0.98 5.98 -2.39 -0.01 0.97 16 51 H 0.07 1.40 7.59 -2.39 -0.02 1.38 16 52 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -77.36 419.79 1.27 -76.08 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.15 Total: 18.61 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 6.30 Total: -10.12 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -4.46 Total: -85.54 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.59 Total: -35.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -77.36 1.27 -76.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482416452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.985 kcal (2) G-P(sol) polarization free energy of solvation -77.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds