Wall clock time and date at job start Wed Apr 1 2020 03:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47128 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47366 * 180.02562 * 6 5 4 8 8 C 1.47798 * 111.00231 * 66.04162 * 7 6 5 9 9 C 1.45860 * 112.91596 * 153.86523 * 8 7 6 10 10 C 1.54510 * 111.58879 * 61.33787 * 9 8 7 11 11 C 1.50467 * 108.84917 * 282.80190 * 10 9 8 12 12 H 1.09001 * 108.77020 * 331.35569 * 11 10 9 13 13 N 1.46496 * 108.76831 * 213.07079 * 11 10 9 14 14 C 1.34785 * 119.99868 * 85.00386 * 13 11 10 15 15 O 1.21277 * 120.00036 * 359.97438 * 14 13 11 16 16 C 1.50696 * 119.99828 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.47041 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00052 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.38792 * 119.99952 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00193 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00173 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47020 * 90.00116 * 22 20 18 24 24 H 1.48504 * 109.47018 * 210.00094 * 22 20 18 25 25 H 1.48499 * 109.46918 * 329.99987 * 22 20 18 26 26 C 1.54287 * 113.03147 * 92.15593 * 11 10 9 27 27 C 1.44271 * 110.99805 * 304.06357 * 7 6 5 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 31 31 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 32 32 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 34 34 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 35 35 H 1.08997 * 109.47286 * 300.00017 * 5 4 3 36 36 H 1.09008 * 109.47201 * 60.00236 * 5 4 3 37 37 H 1.09005 * 109.47059 * 299.99976 * 6 5 4 38 38 H 1.08999 * 109.46874 * 59.99868 * 6 5 4 39 39 H 1.08998 * 108.79715 * 274.76247 * 8 7 6 40 40 H 1.09006 * 108.78934 * 33.09986 * 8 7 6 41 41 H 1.09003 * 109.05212 * 181.87256 * 9 8 7 42 42 H 1.08995 * 109.06234 * 300.85934 * 9 8 7 43 43 H 1.08995 * 109.57758 * 42.61125 * 10 9 8 44 44 H 1.09001 * 109.57334 * 162.86973 * 10 9 8 45 45 H 0.96998 * 120.00347 * 265.00217 * 13 11 10 46 46 H 1.08999 * 109.47327 * 300.00207 * 16 14 13 47 47 H 1.09003 * 109.47092 * 59.99858 * 16 14 13 48 48 H 0.96996 * 120.00394 * 179.97438 * 21 20 18 49 49 H 1.08996 * 108.92372 * 79.02470 * 26 11 10 50 50 H 1.09005 * 108.91625 * 197.67090 * 26 11 10 51 51 H 1.08999 * 108.97785 * 339.95656 * 27 7 6 52 52 H 1.08998 * 108.98107 * 98.66226 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3504 3.0594 0.0012 7 7 5.7291 4.4788 0.0011 8 6 5.3233 5.1354 1.2615 9 6 6.1499 6.2909 1.5917 10 6 6.0556 7.3862 0.5060 11 6 6.8969 6.9765 -0.6722 12 1 7.7146 6.3487 -0.3180 13 7 7.4607 8.1794 -1.2899 14 6 8.6039 8.7098 -0.8120 15 8 9.1656 8.1915 0.1297 16 6 9.1841 9.9468 -1.4477 17 16 10.7079 10.4091 -0.5874 18 6 11.1572 11.8418 -1.5095 19 1 10.5376 12.1721 -2.3301 20 6 12.3080 12.5452 -1.1820 21 7 12.6440 13.6152 -1.8712 22 14 13.3802 11.9735 0.2369 23 1 14.4034 11.0229 -0.2677 24 1 14.0538 13.1454 0.8518 25 1 12.5357 11.2978 1.2544 26 6 6.1017 6.1964 -1.7397 27 6 5.1345 5.1725 -1.1154 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.8332 0.9769 0.8908 34 1 3.8340 0.9766 -0.8891 35 1 3.4228 3.4215 -0.8905 36 1 3.4220 3.4226 0.8895 37 1 5.7524 2.5765 0.8919 38 1 5.7540 2.5753 -0.8881 39 1 4.2866 5.4595 1.1707 40 1 5.3944 4.4114 2.0733 41 1 5.8188 6.7047 2.5443 42 1 7.1878 5.9713 1.6842 43 1 5.0182 7.5006 0.1918 44 1 6.4219 8.3310 0.9077 45 1 7.0112 8.5941 -2.0428 46 1 9.4046 9.7471 -2.4963 47 1 8.4652 10.7630 -1.3767 48 1 13.4480 14.1070 -1.6421 49 1 5.5289 6.9030 -2.3403 50 1 6.8024 5.6694 -2.3873 51 1 4.8507 4.4440 -1.8749 52 1 4.2397 5.6928 -0.7737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484706414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:51 Heat of formation + Delta-G solvation = -92.394141 kcal Electronic energy + Delta-G solvation = -27661.825052 eV Core-core repulsion = 23787.153102 eV Total energy + Delta-G solvation = -3874.671950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.26091 -39.03247 -38.38779 -35.88030 -33.80674 -32.63587 -32.40959 -31.78353 -30.66480 -28.96485 -26.86436 -25.59370 -25.01629 -24.29152 -23.29619 -22.44589 -20.57544 -20.35864 -19.69923 -17.78690 -17.33350 -16.88796 -16.51956 -16.39052 -15.96002 -15.40064 -15.32564 -14.94352 -14.88889 -14.80641 -14.32957 -14.21366 -13.75993 -13.61212 -13.43397 -13.21783 -13.05799 -12.86494 -12.76549 -12.64293 -12.18277 -12.13569 -12.00315 -11.77931 -11.51506 -11.36667 -11.30281 -11.22479 -11.11126 -11.00821 -10.97548 -10.71879 -10.58454 -10.50527 -10.09934 -9.82219 -9.37669 -8.97835 -8.84068 -8.64488 -8.45508 -6.87464 -6.26054 -3.97166 2.83388 3.08586 3.11091 3.34879 3.39363 3.53426 3.56296 3.72932 4.36166 4.37036 4.50486 4.51468 4.56756 4.61330 4.66927 4.77362 4.79047 4.84433 4.86387 4.91025 4.93789 5.02219 5.08331 5.13182 5.19095 5.22707 5.28669 5.30061 5.34205 5.36537 5.39063 5.45618 5.58169 5.59204 5.62062 5.70539 5.75065 5.82298 5.85596 6.02493 6.07360 6.14048 6.24680 6.32416 6.67864 6.74741 6.76808 6.84246 7.74644 7.97108 8.44594 8.61968 9.20417 10.83265 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.040000 B = 0.001575 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.825567 B =17768.921084 C =18033.669939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.066 3.934 5 C -0.157 4.157 6 C 0.059 3.941 7 N -0.525 5.525 8 C 0.056 3.944 9 C -0.117 4.117 10 C -0.124 4.124 11 C 0.154 3.846 12 H 0.093 0.907 13 N -0.738 5.738 14 C 0.530 3.470 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.882 5.882 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C -0.115 4.115 27 C 0.058 3.942 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.395 0.605 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.270 0.730 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.288 -26.273 2.427 35.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.312 6.312 4 C -0.011 4.011 5 C -0.197 4.197 6 C -0.069 4.069 7 N -0.247 5.247 8 C -0.071 4.071 9 C -0.155 4.155 10 C -0.162 4.162 11 C 0.050 3.950 12 H 0.111 0.889 13 N -0.391 5.391 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.154 4.154 27 C -0.072 4.072 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.229 0.771 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.799 -26.795 3.929 35.401 hybrid contribution -1.015 0.547 -1.009 1.532 sum -23.814 -26.248 2.920 35.561 Atomic orbital electron populations 1.21750 0.93692 1.02307 1.03190 1.22459 0.95674 0.83766 1.00057 1.87893 1.21318 1.26517 1.95446 1.22425 0.81178 0.97301 1.00220 1.22326 0.98084 0.95602 1.03643 1.22274 0.91895 0.89421 1.03320 1.61815 1.58632 1.01485 1.02764 1.21079 0.97431 0.96851 0.91693 1.20536 1.01967 0.94749 0.98255 1.21771 0.99674 0.99126 0.95658 1.20690 0.96670 0.85641 0.92018 0.88851 1.46275 1.26210 1.29876 1.36783 1.20228 0.79831 0.84958 0.83373 1.90690 1.59807 1.61447 1.27333 1.23294 1.02741 0.97638 1.03861 1.84772 1.24982 1.36049 1.45764 1.22336 1.13461 1.11298 1.19777 0.89446 1.24706 0.96452 0.93825 0.96279 1.69939 1.25316 1.17012 1.39561 0.86736 0.82074 0.79314 0.83740 1.19218 1.19978 1.15908 1.22187 0.98421 0.97263 0.97506 1.21880 0.95450 0.96212 0.93625 0.91825 0.91053 0.91838 0.93416 0.93428 0.93269 0.93249 0.90847 0.90982 0.90324 0.90272 0.94413 0.91464 0.91418 0.90527 0.92355 0.91081 0.77142 0.88657 0.88635 0.91982 0.91590 0.91234 0.91346 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.28 37.16 0.38 -0.34 16 2 C 0.06 0.32 6.66 37.16 0.25 0.57 16 3 O -0.39 -3.18 10.34 -35.23 -0.36 -3.54 16 4 C 0.07 0.41 5.94 37.16 0.22 0.63 16 5 C -0.16 -0.98 5.03 -26.73 -0.13 -1.12 16 6 C 0.06 0.38 5.07 -3.82 -0.02 0.36 16 7 N -0.52 -4.29 4.45 -239.55 -1.07 -5.36 16 8 C 0.06 0.46 4.01 -6.71 -0.03 0.44 16 9 C -0.12 -1.18 5.53 -29.32 -0.16 -1.34 16 10 C -0.12 -1.37 5.25 -27.20 -0.14 -1.51 16 11 C 0.15 1.81 2.10 -68.52 -0.14 1.67 16 12 H 0.09 1.38 6.72 -51.93 -0.35 1.03 16 13 N -0.74 -9.66 4.92 -54.39 -0.27 -9.92 16 14 C 0.53 9.57 7.62 -10.98 -0.08 9.48 16 15 O -0.52 -11.29 15.47 5.56 0.09 -11.20 16 16 C -0.12 -2.45 6.16 36.00 0.22 -2.23 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 18 C -0.52 -15.19 10.04 30.94 0.31 -14.87 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 22 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 26 C -0.11 -1.00 5.69 -25.50 -0.15 -1.15 16 27 C 0.06 0.44 4.00 -4.67 -0.02 0.42 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.50 6.65 -51.93 -0.35 0.15 16 36 H 0.07 0.51 7.17 -51.92 -0.37 0.14 16 37 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 38 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.04 0.30 6.90 -51.93 -0.36 -0.06 16 40 H 0.07 0.50 7.64 -51.93 -0.40 0.10 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.93 7.58 -51.93 -0.39 0.54 16 43 H 0.06 0.56 7.15 -51.93 -0.37 0.19 16 44 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 45 H 0.40 4.05 8.47 -40.82 -0.35 3.71 16 46 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 47 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 48 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.07 0.49 7.93 -51.93 -0.41 0.08 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.46 6.81 -51.93 -0.35 0.10 16 52 H 0.04 0.34 6.51 -51.93 -0.34 0.00 16 LS Contribution 414.52 15.07 6.25 6.25 Total: -1.00 -34.32 414.52 -10.39 -44.71 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -9.50 Total: -0.26 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 0.41 Total: -6.27 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.56 Total: -41.33 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.28 Total: -14.75 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.32 -10.39 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484706414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.682 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds