Wall clock time and date at job start Wed Apr 1 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47128 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47366 * 180.02562 * 6 5 4 8 8 C 1.47798 * 111.00231 * 66.04162 * 7 6 5 9 9 C 1.45860 * 112.91596 * 153.86523 * 8 7 6 10 10 C 1.54510 * 111.58879 * 61.33787 * 9 8 7 11 11 C 1.50467 * 108.84917 * 282.80190 * 10 9 8 12 12 H 1.09001 * 108.77020 * 331.35569 * 11 10 9 13 13 N 1.46496 * 108.76831 * 213.07079 * 11 10 9 14 14 C 1.34785 * 119.99868 * 85.00386 * 13 11 10 15 15 O 1.21277 * 120.00036 * 359.97438 * 14 13 11 16 16 C 1.50696 * 119.99828 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.47041 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00052 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.38792 * 119.99952 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00193 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00173 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47020 * 90.00116 * 22 20 18 24 24 H 1.48504 * 109.47018 * 210.00094 * 22 20 18 25 25 H 1.48499 * 109.46918 * 329.99987 * 22 20 18 26 26 C 1.54287 * 113.03147 * 92.15593 * 11 10 9 27 27 C 1.44271 * 110.99805 * 304.06357 * 7 6 5 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 31 31 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 32 32 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 34 34 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 35 35 H 1.08997 * 109.47286 * 300.00017 * 5 4 3 36 36 H 1.09008 * 109.47201 * 60.00236 * 5 4 3 37 37 H 1.09005 * 109.47059 * 299.99976 * 6 5 4 38 38 H 1.08999 * 109.46874 * 59.99868 * 6 5 4 39 39 H 1.08998 * 108.79715 * 274.76247 * 8 7 6 40 40 H 1.09006 * 108.78934 * 33.09986 * 8 7 6 41 41 H 1.09003 * 109.05212 * 181.87256 * 9 8 7 42 42 H 1.08995 * 109.06234 * 300.85934 * 9 8 7 43 43 H 1.08995 * 109.57758 * 42.61125 * 10 9 8 44 44 H 1.09001 * 109.57334 * 162.86973 * 10 9 8 45 45 H 0.96998 * 120.00347 * 265.00217 * 13 11 10 46 46 H 1.08999 * 109.47327 * 300.00207 * 16 14 13 47 47 H 1.09003 * 109.47092 * 59.99858 * 16 14 13 48 48 H 0.96996 * 120.00394 * 179.97438 * 21 20 18 49 49 H 1.08996 * 108.92372 * 79.02470 * 26 11 10 50 50 H 1.09005 * 108.91625 * 197.67090 * 26 11 10 51 51 H 1.08999 * 108.97785 * 339.95656 * 27 7 6 52 52 H 1.08998 * 108.98107 * 98.66226 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3504 3.0594 0.0012 7 7 5.7291 4.4788 0.0011 8 6 5.3233 5.1354 1.2615 9 6 6.1499 6.2909 1.5917 10 6 6.0556 7.3862 0.5060 11 6 6.8969 6.9765 -0.6722 12 1 7.7146 6.3487 -0.3180 13 7 7.4607 8.1794 -1.2899 14 6 8.6039 8.7098 -0.8120 15 8 9.1656 8.1915 0.1297 16 6 9.1841 9.9468 -1.4477 17 16 10.7079 10.4091 -0.5874 18 6 11.1572 11.8418 -1.5095 19 1 10.5376 12.1721 -2.3301 20 6 12.3080 12.5452 -1.1820 21 7 12.6440 13.6152 -1.8712 22 14 13.3802 11.9735 0.2369 23 1 14.4034 11.0229 -0.2677 24 1 14.0538 13.1454 0.8518 25 1 12.5357 11.2978 1.2544 26 6 6.1017 6.1964 -1.7397 27 6 5.1345 5.1725 -1.1154 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.8332 0.9769 0.8908 34 1 3.8340 0.9766 -0.8891 35 1 3.4228 3.4215 -0.8905 36 1 3.4220 3.4226 0.8895 37 1 5.7524 2.5765 0.8919 38 1 5.7540 2.5753 -0.8881 39 1 4.2866 5.4595 1.1707 40 1 5.3944 4.4114 2.0733 41 1 5.8188 6.7047 2.5443 42 1 7.1878 5.9713 1.6842 43 1 5.0182 7.5006 0.1918 44 1 6.4219 8.3310 0.9077 45 1 7.0112 8.5941 -2.0428 46 1 9.4046 9.7471 -2.4963 47 1 8.4652 10.7630 -1.3767 48 1 13.4480 14.1070 -1.6421 49 1 5.5289 6.9030 -2.3403 50 1 6.8024 5.6694 -2.3873 51 1 4.8507 4.4440 -1.8749 52 1 4.2397 5.6928 -0.7737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484706414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:50 Heat of formation + Delta-G solvation = -116.438029 kcal Electronic energy + Delta-G solvation = -27662.867673 eV Core-core repulsion = 23787.153102 eV Total energy + Delta-G solvation = -3875.714571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20473 -40.06860 -38.96567 -36.85076 -34.71452 -34.65368 -33.22752 -32.68295 -31.35489 -30.23196 -27.88505 -27.56447 -25.78497 -24.95587 -23.69820 -23.01045 -21.76533 -21.41003 -20.44390 -19.77896 -17.94306 -17.87337 -17.35520 -17.32642 -17.08188 -16.74276 -16.36256 -16.30312 -15.79189 -15.66797 -15.44760 -15.02359 -14.97981 -14.79243 -14.56414 -14.26825 -14.13419 -13.74283 -13.57504 -13.36970 -13.34058 -13.12194 -13.00982 -12.78177 -12.64986 -12.56276 -12.30541 -12.14701 -12.05845 -11.95183 -11.87009 -11.81794 -11.56736 -11.51126 -11.34157 -11.16802 -10.87122 -10.55758 -10.52513 -10.05011 -9.23861 -8.98728 -8.51319 -6.21884 1.00246 1.31545 1.47496 1.57172 1.62803 2.24498 2.30634 2.67301 2.73626 2.87041 2.98621 3.73015 3.85232 3.90209 3.98263 4.07449 4.10032 4.14710 4.22736 4.23707 4.26538 4.33983 4.37436 4.45169 4.46780 4.47222 4.48454 4.51853 4.54227 4.72755 4.74070 4.79815 4.84217 4.87972 4.94702 5.00157 5.06145 5.12018 5.18699 5.23007 5.26079 5.28487 5.38660 5.42782 5.63043 5.71015 6.11448 6.14459 6.23034 6.30312 6.55126 6.94080 7.27964 8.61193 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.040000 B = 0.001575 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.825567 B =17768.921084 C =18033.669939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.417 6.417 4 C 0.064 3.936 5 C -0.147 4.147 6 C 0.064 3.936 7 N -0.541 5.541 8 C 0.060 3.940 9 C -0.112 4.112 10 C -0.120 4.120 11 C 0.157 3.843 12 H 0.062 0.938 13 N -0.714 5.714 14 C 0.534 3.466 15 O -0.561 6.561 16 C -0.112 4.112 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.238 1.238 26 C -0.108 4.108 27 C 0.059 3.941 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.413 0.587 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.277 0.723 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.082 0.918 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.974 -28.029 2.295 38.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.013 4.013 5 C -0.186 4.186 6 C -0.064 4.064 7 N -0.263 5.263 8 C -0.067 4.067 9 C -0.150 4.150 10 C -0.158 4.158 11 C 0.053 3.947 12 H 0.080 0.920 13 N -0.367 5.367 14 C 0.319 3.681 15 O -0.439 6.439 16 C -0.263 4.263 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.162 1.162 26 C -0.147 4.147 27 C -0.070 4.070 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.250 0.750 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.085 0.915 51 H 0.101 0.899 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.531 -28.558 3.760 37.835 hybrid contribution -0.617 1.035 -1.045 1.595 sum -25.148 -27.524 2.716 37.381 Atomic orbital electron populations 1.21774 0.93245 1.03294 1.02557 1.22626 0.96147 0.82997 1.00809 1.87858 1.22276 1.27939 1.95614 1.22494 0.80566 0.97306 1.00968 1.22205 0.97733 0.95656 1.03021 1.22255 0.91993 0.88360 1.03802 1.61776 1.59279 1.02441 1.02849 1.20992 0.97282 0.96216 0.92179 1.20496 1.00771 0.95346 0.98387 1.21715 1.00510 0.98109 0.95508 1.20797 0.96088 0.84566 0.93280 0.92018 1.46097 1.24390 1.29713 1.36514 1.19930 0.80869 0.84370 0.82890 1.90682 1.61417 1.62544 1.29288 1.23289 0.99897 0.99123 1.03946 1.84711 1.29018 1.34484 1.46709 1.22476 1.13289 1.12577 1.19392 0.92010 1.25541 0.97719 0.93921 0.98624 1.70014 1.26239 1.18115 1.41169 0.85876 0.80375 0.79394 0.80784 1.18690 1.18234 1.16177 1.22175 0.98457 0.97575 0.96509 1.21885 0.95035 0.96247 0.93820 0.92400 0.89295 0.92483 0.92592 0.92700 0.92622 0.92385 0.91188 0.91783 0.90053 0.89646 0.93421 0.90756 0.90813 0.93240 0.90141 0.93734 0.75038 0.87033 0.87014 0.91364 0.89449 0.91548 0.89929 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.98 0.74 -0.51 16 2 C 0.05 0.50 6.66 71.98 0.48 0.98 16 3 O -0.42 -6.18 10.34 -148.98 -1.54 -7.73 16 4 C 0.06 0.67 5.94 71.98 0.43 1.10 16 5 C -0.15 -1.55 5.03 30.59 0.15 -1.39 16 6 C 0.06 0.69 5.07 86.30 0.44 1.12 16 7 N -0.54 -7.87 4.45 -911.81 -4.06 -11.93 16 8 C 0.06 0.89 4.01 83.94 0.34 1.23 16 9 C -0.11 -2.20 5.53 28.92 0.16 -2.04 16 10 C -0.12 -2.53 5.25 30.29 0.16 -2.37 16 11 C 0.16 3.49 2.10 44.61 0.09 3.58 16 12 H 0.06 1.83 6.72 -2.39 -0.02 1.81 16 13 N -0.71 -17.57 4.92 -444.36 -2.19 -19.76 16 14 C 0.53 18.92 7.62 87.65 0.67 19.59 16 15 O -0.56 -24.69 15.47 -3.02 -0.05 -24.73 16 16 C -0.11 -4.30 6.16 71.23 0.44 -3.86 16 17 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 18 C -0.53 -31.26 10.04 67.95 0.68 -30.58 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.81 5.50 84.86 0.47 3.27 16 21 N -0.92 -56.33 13.97 21.65 0.30 -56.03 16 22 Si 0.91 45.56 27.74 68.60 1.90 47.46 16 23 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 26 C -0.11 -1.61 5.69 31.39 0.18 -1.44 16 27 C 0.06 0.74 4.00 87.15 0.35 1.09 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.79 6.65 -2.39 -0.02 0.78 16 36 H 0.06 0.79 7.17 -2.38 -0.02 0.77 16 37 H 0.08 0.84 7.89 -2.38 -0.02 0.82 16 38 H 0.09 0.83 8.13 -2.39 -0.02 0.81 16 39 H 0.05 0.63 6.90 -2.39 -0.02 0.61 16 40 H 0.07 1.00 7.64 -2.38 -0.02 0.98 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.24 7.58 -2.39 -0.02 1.22 16 43 H 0.08 1.34 7.15 -2.39 -0.02 1.32 16 44 H 0.04 1.18 7.79 -2.39 -0.02 1.16 16 45 H 0.41 7.35 8.47 -92.71 -0.78 6.57 16 46 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 47 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 48 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 49 H 0.09 0.96 7.93 -2.39 -0.02 0.94 16 50 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.08 0.84 6.81 -2.39 -0.02 0.82 16 52 H 0.05 0.60 6.51 -2.39 -0.02 0.58 16 Total: -1.00 -75.36 414.52 -0.84 -76.20 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.06 Total: 16.82 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.77 Total: -10.22 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -5.94 Total: -87.71 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.59 Total: -32.46 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -75.36 -0.84 -76.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484706414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.234 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds