Wall clock time and date at job start Wed Apr 1 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46868 * 2 1 4 4 C 1.42897 * 113.99847 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46833 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46919 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47248 * 180.02562 * 6 5 4 8 8 C 1.48562 * 111.00014 * 54.57980 * 7 6 5 9 9 C 1.54379 * 104.59434 * 159.04505 * 8 7 6 10 10 H 1.09000 * 110.40706 * 217.21079 * 9 8 7 11 11 N 1.46499 * 110.32646 * 95.04248 * 9 8 7 12 12 C 1.34777 * 119.99665 * 89.64066 * 11 9 8 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 9 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 9 15 15 S 1.81005 * 109.46906 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99828 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00390 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99869 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00444 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00089 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47406 * 89.99536 * 20 18 16 22 22 H 1.48502 * 109.46978 * 209.99777 * 20 18 16 23 23 H 1.48504 * 109.47081 * 329.99606 * 20 18 16 24 24 C 1.54262 * 105.06005 * 336.14640 * 9 8 7 25 25 C 1.52999 * 110.32716 * 118.90127 * 24 9 8 26 26 C 1.53003 * 110.32580 * 241.00728 * 24 9 8 27 27 C 1.48557 * 111.00333 * 170.00076 * 7 6 5 28 28 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47021 * 299.99397 * 1 2 3 30 30 H 1.08996 * 109.47632 * 59.99683 * 1 2 3 31 31 H 1.09005 * 109.47021 * 240.00603 * 2 1 3 32 32 H 1.08996 * 109.47632 * 120.00317 * 2 1 3 33 33 H 1.08999 * 109.46843 * 60.00448 * 4 3 2 34 34 H 1.08997 * 109.47095 * 300.00130 * 4 3 2 35 35 H 1.08999 * 109.47209 * 60.00466 * 5 4 3 36 36 H 1.08997 * 109.47218 * 299.99848 * 5 4 3 37 37 H 1.09005 * 109.47082 * 59.99756 * 6 5 4 38 38 H 1.09003 * 109.47162 * 300.00300 * 6 5 4 39 39 H 1.08999 * 110.41217 * 40.26478 * 8 7 6 40 40 H 1.09005 * 110.41077 * 277.81981 * 8 7 6 41 41 H 0.97001 * 119.99790 * 269.35779 * 11 9 8 42 42 H 1.09003 * 109.47112 * 299.99065 * 14 12 11 43 43 H 1.08993 * 109.47916 * 59.99687 * 14 12 11 44 44 H 0.96995 * 120.00766 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.46835 * 59.99292 * 25 24 9 46 46 H 1.08998 * 109.47482 * 180.02562 * 25 24 9 47 47 H 1.09005 * 109.46715 * 300.00142 * 25 24 9 48 48 H 1.09000 * 109.47287 * 59.99292 * 26 24 9 49 49 H 1.08991 * 109.47463 * 179.97438 * 26 24 9 50 50 H 1.09003 * 109.46785 * 300.00247 * 26 24 9 51 51 H 1.08998 * 110.41383 * 82.17754 * 27 7 6 52 52 H 1.09007 * 110.51088 * 319.78945 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3505 3.0594 -0.0012 7 7 5.7293 4.4787 0.0001 8 6 5.0909 5.1990 1.1318 9 6 5.9602 6.4592 1.3306 10 1 6.0508 6.6950 2.3909 11 7 5.3844 7.5942 0.6051 12 6 4.4867 8.3961 1.2114 13 8 4.1518 8.1750 2.3559 14 6 3.8991 9.5673 0.4671 15 16 2.7350 10.4425 1.5419 16 6 2.2156 11.7247 0.4505 17 1 2.6190 11.7787 -0.5498 18 6 1.2882 12.6653 0.8765 19 7 0.9005 13.6234 0.0615 20 14 0.5910 12.5724 2.6071 21 1 1.4459 13.3632 3.5283 22 1 -0.7879 13.1236 2.6155 23 1 0.5607 11.1562 3.0532 24 6 7.3388 6.0919 0.7438 25 6 7.6873 7.0242 -0.4182 26 6 8.4157 6.1699 1.8278 27 6 7.1864 4.6407 0.2398 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8935 -0.5138 0.8899 33 1 3.8332 0.9769 -0.8909 34 1 3.8340 0.9765 0.8891 35 1 3.4229 3.4215 0.8906 36 1 3.4221 3.4225 -0.8894 37 1 5.7525 2.5764 -0.8919 38 1 5.7541 2.5751 0.8881 39 1 5.1040 4.5825 2.0306 40 1 4.0688 5.4787 0.8763 41 1 5.6524 7.7710 -0.3103 42 1 4.6982 10.2456 0.1679 43 1 3.3757 9.2091 -0.4193 44 1 0.2526 14.2810 0.3593 45 1 7.7152 8.0539 -0.0619 46 1 8.6625 6.7525 -0.8222 47 1 6.9320 6.9302 -1.1985 48 1 8.1740 5.4736 2.6309 49 1 9.3827 5.9076 1.3989 50 1 8.4574 7.1836 2.2263 51 1 7.7421 4.4999 -0.6873 52 1 7.5293 3.9368 0.9982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506731689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:30 Heat of formation + Delta-G solvation = -88.035844 kcal Electronic energy + Delta-G solvation = -28208.676544 eV Core-core repulsion = 24334.193584 eV Total energy + Delta-G solvation = -3874.482960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59074 -38.67865 -38.28953 -35.78743 -33.46136 -32.62202 -32.40325 -30.87163 -29.99255 -28.25516 -27.32861 -26.41513 -25.57631 -24.05501 -23.11731 -22.52121 -20.99604 -20.10645 -19.23150 -17.82237 -17.08876 -16.82060 -16.60067 -16.43198 -15.86458 -15.47099 -14.94161 -14.83317 -14.74284 -14.51184 -14.12279 -13.89878 -13.74967 -13.52677 -13.41454 -13.05729 -12.79678 -12.73632 -12.70654 -12.56038 -12.36685 -12.05022 -11.99347 -11.85491 -11.65102 -11.58557 -11.30012 -11.23065 -11.16345 -11.07030 -10.98008 -10.88217 -10.83383 -10.53317 -9.92947 -9.82330 -9.44777 -8.97826 -8.88360 -8.74628 -8.45690 -6.87398 -6.25540 -3.96706 2.81961 3.02746 3.19809 3.34497 3.38161 3.53574 3.71312 3.79031 4.13658 4.36360 4.36504 4.58674 4.63661 4.69080 4.72384 4.79218 4.81633 4.95514 4.98803 4.99903 5.01983 5.03621 5.10469 5.13548 5.17792 5.28006 5.30298 5.33414 5.36280 5.39674 5.44731 5.55797 5.59447 5.63057 5.67978 5.77666 5.78272 5.82104 5.83103 5.90822 5.93334 5.95602 6.04764 6.07685 6.49864 6.69307 6.71909 6.90094 7.71386 7.97635 8.45460 8.56890 9.20780 10.83744 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008014 B = 0.002638 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.916151 B =10610.188142 C =13378.976756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.388 6.388 4 C 0.066 3.934 5 C -0.121 4.121 6 C 0.050 3.950 7 N -0.506 5.506 8 C 0.021 3.979 9 C 0.152 3.848 10 H 0.097 0.903 11 N -0.724 5.724 12 C 0.530 3.470 13 O -0.522 6.522 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.235 1.235 24 C -0.075 4.075 25 C -0.141 4.141 26 C -0.139 4.139 27 C 0.041 3.959 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.403 0.597 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.270 0.730 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.084 0.916 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.461 -27.373 -1.706 30.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.307 6.307 4 C -0.011 4.011 5 C -0.159 4.159 6 C -0.078 4.078 7 N -0.230 5.230 8 C -0.108 4.108 9 C 0.046 3.954 10 H 0.115 0.885 11 N -0.380 5.380 12 C 0.316 3.684 13 O -0.397 6.397 14 C -0.274 4.274 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.114 4.114 19 N -0.518 5.518 20 Si 0.682 3.318 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.076 4.076 25 C -0.199 4.199 26 C -0.197 4.197 27 C -0.087 4.087 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.241 0.759 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.102 0.898 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.490 -27.209 -0.365 29.941 hybrid contribution 0.474 -0.147 -0.405 0.641 sum 12.964 -27.356 -0.770 30.282 Atomic orbital electron populations 1.21755 0.93622 1.02207 1.03435 1.22455 0.95775 0.83789 0.99860 1.87923 1.21025 1.26380 1.95385 1.22404 0.81419 0.97386 0.99882 1.21551 0.94860 0.94939 1.04541 1.22149 0.95222 0.89441 1.01007 1.65438 1.05267 1.10591 1.41663 1.23630 1.00114 0.94688 0.92366 1.21647 0.90812 0.85620 0.97361 0.88472 1.46205 1.44959 1.29280 1.17571 1.20308 0.78284 0.82878 0.86911 1.90689 1.59217 1.72142 1.17684 1.23275 1.03096 0.97802 1.03263 1.84768 1.51330 1.33802 1.21672 1.22325 1.30068 1.12611 1.01762 0.89395 1.24715 0.94899 0.93897 0.97842 1.69936 1.31448 1.14522 1.35877 0.86734 0.79130 0.81494 0.84493 1.19260 1.19990 1.15893 1.21562 0.94566 0.95128 0.96358 1.21824 1.01548 0.99292 0.97210 1.21886 0.97717 1.02547 0.97546 1.23269 0.89680 0.95283 1.00467 0.91140 0.91697 0.91704 0.93512 0.93551 0.93352 0.93610 0.90746 0.89988 0.90406 0.94580 0.93085 0.89063 0.75944 0.88616 0.88474 0.91980 0.91754 0.92165 0.91545 0.92483 0.92120 0.91850 0.89757 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.39 -4.13 10.34 -35.23 -0.36 -4.49 16 4 C 0.07 0.56 5.94 37.16 0.22 0.78 16 5 C -0.12 -1.12 5.30 -26.73 -0.14 -1.26 16 6 C 0.05 0.40 5.06 -3.82 -0.02 0.38 16 7 N -0.51 -4.75 5.49 -229.97 -1.26 -6.01 16 8 C 0.02 0.24 4.82 -2.18 -0.01 0.23 16 9 C 0.15 1.75 3.04 -66.55 -0.20 1.55 16 10 H 0.10 1.29 7.12 -51.93 -0.37 0.92 16 11 N -0.72 -9.51 4.52 -52.47 -0.24 -9.74 16 12 C 0.53 9.47 7.85 -10.99 -0.09 9.39 16 13 O -0.52 -11.22 15.51 5.55 0.09 -11.14 16 14 C -0.12 -2.43 6.16 36.00 0.22 -2.21 16 15 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 16 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 17 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 18 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.85 13.97 55.49 0.78 -26.07 16 20 Si 0.86 22.04 27.74 -169.99 -4.72 17.33 16 21 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 24 C -0.07 -0.64 1.03 -153.12 -0.16 -0.79 16 25 C -0.14 -1.12 7.09 37.16 0.26 -0.86 16 26 C -0.14 -1.05 8.25 37.16 0.31 -0.74 16 27 C 0.04 0.32 5.59 -2.18 -0.01 0.31 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.80 6.84 -51.93 -0.36 0.44 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.27 7.88 -51.93 -0.41 -0.14 16 39 H 0.05 0.55 8.00 -51.93 -0.42 0.14 16 40 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 41 H 0.40 4.49 5.91 -40.82 -0.24 4.25 16 42 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 44 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.55 6.97 -51.93 -0.36 0.18 16 48 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.59 7.86 -51.93 -0.41 0.19 16 52 H 0.05 0.34 7.52 -51.93 -0.39 -0.05 16 LS Contribution 421.53 15.07 6.35 6.35 Total: -1.00 -33.97 421.53 -9.80 -43.77 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -9.66 Total: 1.01 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 1.23 Total: -5.35 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.72 Total: -41.83 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.28 Total: -15.63 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.97 -9.80 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506731689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.268 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds