Wall clock time and date at job start Wed Apr 1 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46868 * 2 1 4 4 C 1.42897 * 113.99847 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46833 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46919 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47248 * 180.02562 * 6 5 4 8 8 C 1.48562 * 111.00014 * 54.57980 * 7 6 5 9 9 C 1.54379 * 104.59434 * 159.04505 * 8 7 6 10 10 H 1.09000 * 110.40706 * 217.21079 * 9 8 7 11 11 N 1.46499 * 110.32646 * 95.04248 * 9 8 7 12 12 C 1.34777 * 119.99665 * 89.64066 * 11 9 8 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 9 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 9 15 15 S 1.81005 * 109.46906 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99828 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00390 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99869 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00444 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00089 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47406 * 89.99536 * 20 18 16 22 22 H 1.48502 * 109.46978 * 209.99777 * 20 18 16 23 23 H 1.48504 * 109.47081 * 329.99606 * 20 18 16 24 24 C 1.54262 * 105.06005 * 336.14640 * 9 8 7 25 25 C 1.52999 * 110.32716 * 118.90127 * 24 9 8 26 26 C 1.53003 * 110.32580 * 241.00728 * 24 9 8 27 27 C 1.48557 * 111.00333 * 170.00076 * 7 6 5 28 28 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47021 * 299.99397 * 1 2 3 30 30 H 1.08996 * 109.47632 * 59.99683 * 1 2 3 31 31 H 1.09005 * 109.47021 * 240.00603 * 2 1 3 32 32 H 1.08996 * 109.47632 * 120.00317 * 2 1 3 33 33 H 1.08999 * 109.46843 * 60.00448 * 4 3 2 34 34 H 1.08997 * 109.47095 * 300.00130 * 4 3 2 35 35 H 1.08999 * 109.47209 * 60.00466 * 5 4 3 36 36 H 1.08997 * 109.47218 * 299.99848 * 5 4 3 37 37 H 1.09005 * 109.47082 * 59.99756 * 6 5 4 38 38 H 1.09003 * 109.47162 * 300.00300 * 6 5 4 39 39 H 1.08999 * 110.41217 * 40.26478 * 8 7 6 40 40 H 1.09005 * 110.41077 * 277.81981 * 8 7 6 41 41 H 0.97001 * 119.99790 * 269.35779 * 11 9 8 42 42 H 1.09003 * 109.47112 * 299.99065 * 14 12 11 43 43 H 1.08993 * 109.47916 * 59.99687 * 14 12 11 44 44 H 0.96995 * 120.00766 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.46835 * 59.99292 * 25 24 9 46 46 H 1.08998 * 109.47482 * 180.02562 * 25 24 9 47 47 H 1.09005 * 109.46715 * 300.00142 * 25 24 9 48 48 H 1.09000 * 109.47287 * 59.99292 * 26 24 9 49 49 H 1.08991 * 109.47463 * 179.97438 * 26 24 9 50 50 H 1.09003 * 109.46785 * 300.00247 * 26 24 9 51 51 H 1.08998 * 110.41383 * 82.17754 * 27 7 6 52 52 H 1.09007 * 110.51088 * 319.78945 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3505 3.0594 -0.0012 7 7 5.7293 4.4787 0.0001 8 6 5.0909 5.1990 1.1318 9 6 5.9602 6.4592 1.3306 10 1 6.0508 6.6950 2.3909 11 7 5.3844 7.5942 0.6051 12 6 4.4867 8.3961 1.2114 13 8 4.1518 8.1750 2.3559 14 6 3.8991 9.5673 0.4671 15 16 2.7350 10.4425 1.5419 16 6 2.2156 11.7247 0.4505 17 1 2.6190 11.7787 -0.5498 18 6 1.2882 12.6653 0.8765 19 7 0.9005 13.6234 0.0615 20 14 0.5910 12.5724 2.6071 21 1 1.4459 13.3632 3.5283 22 1 -0.7879 13.1236 2.6155 23 1 0.5607 11.1562 3.0532 24 6 7.3388 6.0919 0.7438 25 6 7.6873 7.0242 -0.4182 26 6 8.4157 6.1699 1.8278 27 6 7.1864 4.6407 0.2398 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8935 -0.5138 0.8899 33 1 3.8332 0.9769 -0.8909 34 1 3.8340 0.9765 0.8891 35 1 3.4229 3.4215 0.8906 36 1 3.4221 3.4225 -0.8894 37 1 5.7525 2.5764 -0.8919 38 1 5.7541 2.5751 0.8881 39 1 5.1040 4.5825 2.0306 40 1 4.0688 5.4787 0.8763 41 1 5.6524 7.7710 -0.3103 42 1 4.6982 10.2456 0.1679 43 1 3.3757 9.2091 -0.4193 44 1 0.2526 14.2810 0.3593 45 1 7.7152 8.0539 -0.0619 46 1 8.6625 6.7525 -0.8222 47 1 6.9320 6.9302 -1.1985 48 1 8.1740 5.4736 2.6309 49 1 9.3827 5.9076 1.3989 50 1 8.4574 7.1836 2.2263 51 1 7.7421 4.4999 -0.6873 52 1 7.5293 3.9368 0.9982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506731689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:29 Heat of formation + Delta-G solvation = -111.907700 kcal Electronic energy + Delta-G solvation = -28209.711705 eV Core-core repulsion = 24334.193584 eV Total energy + Delta-G solvation = -3875.518121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55842 -39.84017 -39.07094 -36.59723 -34.69078 -34.58210 -33.28236 -31.63895 -31.23148 -29.26229 -28.11398 -27.81813 -27.05534 -24.85786 -23.70687 -23.34245 -21.93024 -21.23995 -20.21755 -19.67613 -17.97496 -17.72370 -17.68546 -17.40910 -17.09915 -16.76390 -16.32255 -16.14405 -15.78594 -15.46088 -15.19271 -15.04401 -14.87424 -14.68442 -14.33074 -14.18174 -13.90953 -13.75184 -13.49031 -13.37816 -13.33021 -13.20872 -13.01908 -12.89106 -12.71569 -12.65406 -12.53432 -12.39643 -12.25086 -11.98728 -11.88195 -11.85119 -11.76949 -11.57310 -11.53012 -11.17217 -10.96911 -10.57633 -10.53846 -10.08506 -9.47548 -8.99399 -8.51565 -6.22171 0.98741 1.30809 1.46656 1.55696 1.57177 2.23016 2.27468 2.57415 2.72319 2.86481 3.07641 3.39479 3.58016 3.86092 3.91725 3.97625 4.05313 4.13799 4.15911 4.21240 4.23544 4.29305 4.33523 4.35920 4.44423 4.46053 4.47151 4.49119 4.61510 4.68377 4.73205 4.79697 4.82855 4.83331 4.84553 4.98701 5.00215 5.05254 5.11731 5.16256 5.20916 5.24896 5.32044 5.40089 5.49006 5.70858 5.79833 6.01780 6.11501 6.28560 6.48515 6.93528 7.20511 8.60925 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008014 B = 0.002638 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.916151 B =10610.188142 C =13378.976756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.421 6.421 4 C 0.066 3.934 5 C -0.116 4.116 6 C 0.055 3.945 7 N -0.514 5.514 8 C 0.028 3.972 9 C 0.146 3.854 10 H 0.079 0.921 11 N -0.700 5.700 12 C 0.535 3.465 13 O -0.563 6.563 14 C -0.111 4.111 15 S -0.173 6.173 16 C -0.528 4.528 17 H 0.062 0.938 18 C 0.045 3.955 19 N -0.917 5.917 20 Si 0.915 3.085 21 H -0.261 1.261 22 H -0.259 1.259 23 H -0.238 1.238 24 C -0.067 4.067 25 C -0.142 4.142 26 C -0.137 4.137 27 C 0.045 3.955 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.415 0.585 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.277 0.723 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.051 0.949 51 H 0.102 0.898 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.442 -29.702 -1.843 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.341 6.341 4 C -0.010 4.010 5 C -0.154 4.154 6 C -0.073 4.073 7 N -0.238 5.238 8 C -0.101 4.101 9 C 0.040 3.960 10 H 0.097 0.903 11 N -0.356 5.356 12 C 0.320 3.680 13 O -0.441 6.441 14 C -0.262 4.262 15 S 0.053 5.947 16 C -0.676 4.676 17 H 0.080 0.920 18 C -0.160 4.160 19 N -0.555 5.555 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.069 4.069 25 C -0.199 4.199 26 C -0.195 4.195 27 C -0.082 4.082 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.255 0.745 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.070 0.930 51 H 0.120 0.880 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.505 -29.562 -0.544 32.933 hybrid contribution -0.047 0.477 -0.473 0.674 sum 14.458 -29.084 -1.017 32.495 Atomic orbital electron populations 1.21794 0.93501 1.03369 1.02412 1.22644 0.96006 0.82790 1.01039 1.87888 1.22319 1.28263 1.95631 1.22468 0.80662 0.96665 1.01235 1.21486 0.95955 0.95530 1.02475 1.22165 0.94050 0.88732 1.02401 1.65431 1.06313 1.11454 1.40564 1.23418 0.98631 0.94878 0.93221 1.21833 0.92896 0.84781 0.96481 0.90274 1.46027 1.43007 1.28584 1.17952 1.19969 0.78870 0.82871 0.86244 1.90677 1.60964 1.73183 1.19293 1.23266 1.02215 0.98350 1.02406 1.84681 1.53578 1.33447 1.22986 1.22463 1.30009 1.13819 1.01317 0.91998 1.25568 0.95282 0.93615 1.01570 1.70012 1.32333 1.15389 1.37761 0.85865 0.79200 0.81370 0.79924 1.18590 1.18311 1.16170 1.21562 0.92626 0.95895 0.96775 1.21834 1.02652 0.98648 0.96776 1.21875 0.98267 1.01995 0.97323 1.23328 0.88552 0.94686 1.01684 0.88901 0.92825 0.92594 0.92131 0.92444 0.91666 0.92384 0.92991 0.91870 0.88585 0.93360 0.92893 0.92004 0.74481 0.86898 0.87261 0.91358 0.92606 0.90066 0.91794 0.92297 0.90065 0.93013 0.88026 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.42 -8.82 10.34 -148.98 -1.54 -10.36 16 4 C 0.07 1.03 5.94 71.98 0.43 1.46 16 5 C -0.12 -2.11 5.30 30.60 0.16 -1.95 16 6 C 0.05 0.76 5.06 86.31 0.44 1.19 16 7 N -0.51 -8.68 5.49 -881.48 -4.84 -13.52 16 8 C 0.03 0.62 4.82 86.45 0.42 1.03 16 9 C 0.15 3.25 3.04 45.89 0.14 3.39 16 10 H 0.08 2.10 7.12 -2.39 -0.02 2.08 16 11 N -0.70 -17.92 4.52 -438.29 -1.98 -19.90 16 12 C 0.53 19.09 7.85 87.66 0.69 19.78 16 13 O -0.56 -24.54 15.51 -3.04 -0.05 -24.59 16 14 C -0.11 -4.36 6.16 71.24 0.44 -3.92 16 15 S -0.17 -8.97 18.55 -56.49 -1.05 -10.02 16 16 C -0.53 -31.34 10.04 67.95 0.68 -30.66 16 17 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 18 C 0.04 2.68 5.50 84.86 0.47 3.15 16 19 N -0.92 -56.59 13.97 21.65 0.30 -56.29 16 20 Si 0.91 45.79 27.74 68.60 1.90 47.70 16 21 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.24 -11.93 6.74 99.48 0.67 -11.26 16 24 C -0.07 -0.99 1.03 -51.28 -0.05 -1.04 16 25 C -0.14 -1.86 7.09 71.98 0.51 -1.35 16 26 C -0.14 -1.73 8.25 71.98 0.59 -1.14 16 27 C 0.04 0.56 5.59 86.45 0.48 1.04 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 1.16 6.84 -2.39 -0.02 1.14 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.05 0.58 7.88 -2.39 -0.02 0.56 16 39 H 0.05 1.14 8.00 -2.39 -0.02 1.12 16 40 H 0.06 1.74 7.58 -2.38 -0.02 1.72 16 41 H 0.41 8.67 5.91 -92.71 -0.55 8.12 16 42 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 44 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 45 H 0.05 0.84 7.75 -2.39 -0.02 0.82 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.88 6.97 -2.38 -0.02 0.87 16 48 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 49 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.10 0.99 7.86 -2.39 -0.02 0.97 16 52 H 0.06 0.63 7.52 -2.38 -0.02 0.61 16 Total: -1.00 -75.08 421.53 -0.35 -75.43 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.29 Total: 20.67 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 6.61 Total: -9.13 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -6.52 Total: -89.70 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.59 Total: -34.95 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.70 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -75.08 -0.35 -75.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506731689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.478 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds