Wall clock time and date at job start Wed Apr 1 2020 03:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47016 * 110.99785 * 2 1 4 4 C 1.53103 * 109.29298 * 177.58836 * 3 2 1 5 5 O 1.43103 * 109.20778 * 56.83042 * 4 3 2 6 6 C 1.43016 * 113.76264 * 301.35437 * 5 4 3 7 7 H 1.08998 * 109.50869 * 298.73652 * 6 5 4 8 8 C 1.50703 * 109.54089 * 178.63036 * 6 5 4 9 9 O 1.21276 * 120.00404 * 355.19362 * 8 6 5 10 10 N 1.34775 * 119.99594 * 175.19560 * 8 6 5 11 11 C 1.46504 * 119.99714 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.47211 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47406 * 295.00463 * 12 11 10 14 14 C 1.53003 * 109.47213 * 175.00210 * 12 11 10 15 15 O 1.42901 * 109.46936 * 305.00115 * 14 12 11 16 16 N 1.46906 * 109.46831 * 55.00553 * 12 11 10 17 17 C 1.46900 * 110.99908 * 204.99968 * 16 12 11 18 18 C 1.50693 * 109.47274 * 179.97438 * 17 16 12 19 19 O 1.21296 * 120.00245 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00391 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00244 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00321 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00108 * 179.97438 * 21 20 18 24 24 N 1.31403 * 119.99611 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99979 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47312 * 60.00211 * 25 23 21 27 27 H 1.48500 * 109.46768 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46908 * 299.99976 * 25 23 21 29 29 C 1.47015 * 110.99783 * 236.37072 * 2 1 3 30 30 H 1.09001 * 109.47450 * 56.04599 * 1 2 3 31 31 H 1.09007 * 109.47081 * 176.04233 * 1 2 3 32 32 H 1.08998 * 109.47385 * 296.04208 * 1 2 3 33 33 H 1.09002 * 109.50934 * 297.54561 * 3 2 1 34 34 H 1.09003 * 109.50733 * 57.63155 * 3 2 1 35 35 H 1.09004 * 109.50456 * 176.81005 * 4 3 2 36 36 H 1.09008 * 109.50567 * 296.93791 * 4 3 2 37 37 H 0.96995 * 120.00655 * 0.02562 * 10 8 6 38 38 H 1.08995 * 109.47317 * 300.00624 * 11 10 8 39 39 H 1.09001 * 109.46942 * 60.00253 * 11 10 8 40 40 H 1.08997 * 109.46964 * 65.00643 * 14 12 11 41 41 H 1.09005 * 109.46959 * 185.00340 * 14 12 11 42 42 H 0.96704 * 113.99527 * 179.97438 * 15 14 12 43 43 H 1.00894 * 110.99927 * 81.04823 * 16 12 11 44 44 H 1.09008 * 109.47240 * 299.99860 * 17 16 12 45 45 H 1.09007 * 109.47311 * 59.99759 * 17 16 12 46 46 H 0.97003 * 119.99788 * 359.97438 * 20 18 17 47 47 H 0.97008 * 120.00034 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.50639 * 302.32307 * 29 2 1 49 49 H 1.08997 * 109.50950 * 62.41687 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3274 0.0608 5 8 4.0174 0.5576 -1.0404 6 6 3.5249 -0.7848 -1.0710 7 1 3.8385 -1.3083 -0.1679 8 6 4.0741 -1.4957 -2.2811 9 8 4.7434 -0.8881 -3.0895 10 7 3.8213 -2.8067 -2.4647 11 6 4.3547 -3.4977 -3.6413 12 6 3.9254 -4.9658 -3.6088 13 1 4.3838 -5.4596 -2.7519 14 6 4.3757 -5.6576 -4.8971 15 8 3.8693 -4.9406 -6.0248 16 7 2.4629 -5.0459 -3.4956 17 6 2.0511 -6.3159 -2.8830 18 6 0.5481 -6.3614 -2.7830 19 8 -0.1149 -5.4278 -3.1832 20 7 -0.0596 -7.4399 -2.2499 21 6 -1.4268 -7.4810 -2.1585 22 1 -2.0171 -6.6494 -2.5140 23 6 -2.0533 -8.5931 -1.6093 24 7 -1.3352 -9.6051 -1.1772 25 14 -3.9164 -8.6494 -1.4855 26 1 -4.5063 -8.5396 -2.8437 27 1 -4.3327 -9.9336 -0.8668 28 1 -4.3910 -7.5195 -0.6467 29 6 1.9958 -0.7601 -1.1428 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 -0.3634 0.4512 0.9233 33 1 1.6826 1.8826 -0.9110 34 1 1.6127 1.9095 0.8678 35 1 3.9215 2.3412 0.0039 36 1 3.8385 0.8653 0.9969 37 1 3.2857 -3.2926 -1.8184 38 1 3.9696 -3.0260 -4.5453 39 1 5.4431 -3.4376 -3.6356 40 1 5.4648 -5.6765 -4.9377 41 1 3.9937 -6.6783 -4.9141 42 1 4.1168 -5.3234 -6.8776 43 1 2.0231 -4.9187 -4.3947 44 1 2.3999 -7.1458 -3.4977 45 1 2.4838 -6.3955 -1.8856 46 1 0.4706 -8.1870 -1.9309 47 1 -1.7725 -10.3814 -0.7935 48 1 1.6133 -1.7802 -1.1088 49 1 1.6821 -0.2845 -2.0720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507182038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:41 Heat of formation + Delta-G solvation = -183.385390 kcal Electronic energy + Delta-G solvation = -31085.320582 eV Core-core repulsion = 26660.409741 eV Total energy + Delta-G solvation = -4424.910841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42097 -40.29451 -39.77771 -38.76567 -36.78716 -36.40832 -35.91600 -34.97388 -33.24434 -32.76901 -31.10323 -29.78462 -27.83139 -27.13020 -25.73692 -25.34066 -25.08537 -21.94096 -21.87394 -21.21220 -21.08285 -19.90258 -18.72263 -18.35325 -17.96920 -17.57751 -17.12022 -16.86056 -16.67617 -16.48443 -16.36305 -16.09423 -15.95430 -15.83299 -15.56752 -15.30235 -15.14872 -14.88083 -14.74495 -14.40953 -14.11787 -13.91213 -13.52940 -13.35343 -13.27800 -13.02996 -12.93773 -12.89067 -12.81682 -12.56797 -12.45380 -12.40991 -12.25616 -12.12093 -11.80507 -11.47768 -10.95149 -10.86029 -10.76981 -10.30977 -10.04721 -9.98296 -9.55912 -9.32498 -8.44703 -5.92506 1.40491 1.42829 1.47876 1.52838 1.83879 2.09988 2.30056 2.68376 2.84148 3.05754 3.23378 3.36771 3.63180 3.68416 3.73487 3.82912 3.88041 3.94947 4.07372 4.13469 4.28719 4.32969 4.37245 4.45196 4.46870 4.50999 4.56756 4.59267 4.63882 4.64991 4.71538 4.77289 4.80143 4.89032 4.97074 5.01422 5.42514 5.43237 5.73954 5.85325 5.90925 5.98369 6.12167 6.35122 6.54767 6.63553 6.90321 7.16006 7.19185 7.60617 8.16487 8.72334 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008647 B = 0.002978 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.159808 B = 9401.515181 C =12118.295787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.013 3.987 4 C 0.058 3.942 5 O -0.387 6.387 6 C 0.086 3.914 7 H 0.113 0.887 8 C 0.517 3.483 9 O -0.573 6.573 10 N -0.697 5.697 11 C 0.142 3.858 12 C 0.079 3.921 13 H 0.123 0.877 14 C 0.048 3.952 15 O -0.590 6.590 16 N -0.670 5.670 17 C 0.063 3.937 18 C 0.439 3.561 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.035 3.965 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.415 0.585 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.397 0.603 43 H 0.349 0.651 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.096 0.904 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.326 11.273 2.541 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.267 5.267 3 C -0.115 4.115 4 C -0.018 4.018 5 O -0.305 6.305 6 C 0.024 3.976 7 H 0.130 0.870 8 C 0.302 3.698 9 O -0.452 6.452 10 N -0.349 5.349 11 C 0.018 3.982 12 C -0.031 4.031 13 H 0.140 0.860 14 C -0.032 4.032 15 O -0.398 6.398 16 N -0.302 5.302 17 C -0.069 4.069 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.561 5.561 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.094 4.094 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.168 0.832 44 H 0.085 0.915 45 H 0.132 0.868 46 H 0.231 0.769 47 H 0.086 0.914 48 H 0.115 0.885 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 13.309 12.688 3.139 18.654 hybrid contribution -1.229 -1.439 -1.463 2.392 sum 12.081 11.249 1.675 16.592 Atomic orbital electron populations 1.22448 0.85609 1.02517 1.01894 1.62278 1.09344 1.14214 1.40849 1.22953 0.96640 0.89320 1.02600 1.23024 0.92233 0.97207 0.89311 1.88083 1.69913 1.22370 1.50143 1.21892 0.93005 0.85480 0.97189 0.86979 1.20398 0.80088 0.82550 0.86773 1.90676 1.40957 1.66980 1.46632 1.45681 1.53789 1.08733 1.26709 1.21204 0.98070 0.91415 0.87535 1.22095 0.88173 0.94908 0.97948 0.85972 1.22847 0.99304 0.94671 0.86342 1.86465 1.78889 1.56682 1.17770 1.60095 1.06292 1.33025 1.30824 1.21635 0.90833 0.92210 1.02202 1.20915 0.91225 0.82974 0.82257 1.90516 1.67794 1.38508 1.54117 1.41909 1.06837 1.17534 1.54781 1.19588 0.83248 1.03678 1.39656 0.90507 1.25950 1.04498 0.94524 0.96073 1.69651 1.37817 1.07310 1.41282 0.85066 0.77376 0.77806 0.78586 1.19931 1.19593 1.19724 1.22587 0.93646 1.00721 0.92473 0.95611 0.91507 0.88954 0.94808 0.86792 0.85896 0.90667 0.74781 0.93022 0.90369 0.90491 0.92463 0.75315 0.83183 0.91527 0.86765 0.76946 0.91363 0.88535 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.63 127.69 1.23 1.69 16 2 N -0.54 -11.56 4.99 -921.41 -4.59 -16.15 16 3 C 0.01 0.22 5.66 86.32 0.49 0.71 16 4 C 0.06 1.03 7.02 72.02 0.51 1.54 16 5 O -0.39 -10.36 10.01 -130.04 -1.30 -11.67 16 6 C 0.09 2.12 3.22 29.88 0.10 2.22 16 7 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 8 C 0.52 15.09 7.18 87.66 0.63 15.72 16 9 O -0.57 -21.57 16.51 15.93 0.26 -21.31 16 10 N -0.70 -17.02 5.35 -463.06 -2.48 -19.50 16 11 C 0.14 3.33 5.26 86.38 0.45 3.78 16 12 C 0.08 1.54 2.57 44.91 0.12 1.66 16 13 H 0.12 1.77 7.80 -2.39 -0.02 1.75 16 14 C 0.05 0.78 6.72 71.98 0.48 1.27 16 15 O -0.59 -11.72 12.05 -148.98 -1.80 -13.51 16 16 N -0.67 -18.50 5.31 -495.55 -2.63 -21.14 16 17 C 0.06 1.86 5.96 85.55 0.51 2.37 16 18 C 0.44 19.42 7.82 87.65 0.69 20.10 16 19 O -0.62 -33.01 15.78 -3.08 -0.05 -33.06 16 20 N -0.57 -27.83 5.29 -306.98 -1.62 -29.45 16 21 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 22 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 23 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 24 N -0.92 -48.17 13.05 21.66 0.28 -47.89 16 25 Si 0.99 42.01 29.55 68.60 2.03 44.03 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 29 C 0.03 0.86 4.89 86.32 0.42 1.29 16 30 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 1.46 8.08 -2.38 -0.02 1.44 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.42 9.21 8.00 -92.71 -0.74 8.47 16 38 H 0.05 1.53 7.39 -2.39 -0.02 1.51 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.89 7.35 -2.38 -0.02 0.87 16 42 H 0.40 4.44 9.12 -74.05 -0.68 3.76 16 43 H 0.35 11.58 7.64 -89.70 -0.69 10.89 16 44 H 0.07 1.69 7.36 -2.38 -0.02 1.67 16 45 H 0.11 2.77 8.06 -2.38 -0.02 2.75 16 46 H 0.40 18.15 7.90 -92.71 -0.73 17.42 16 47 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 48 H 0.10 2.43 7.97 -2.39 -0.02 2.41 16 49 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -77.25 403.88 -6.83 -84.08 By element: Atomic # 1 Polarization: 52.61 SS G_CDS: -1.83 Total: 50.78 kcal Atomic # 6 Polarization: 27.89 SS G_CDS: 6.90 Total: 34.79 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -11.05 Total: -134.13 kcal Atomic # 8 Polarization: -76.66 SS G_CDS: -2.88 Total: -79.55 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -77.25 -6.83 -84.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507182038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.310 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds