Wall clock time and date at job start Wed Apr 1 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47016 * 110.99785 * 2 1 4 4 C 1.53103 * 109.29298 * 177.58836 * 3 2 1 5 5 O 1.43103 * 109.20778 * 56.83042 * 4 3 2 6 6 C 1.43016 * 113.76264 * 301.35437 * 5 4 3 7 7 H 1.08998 * 109.50869 * 298.73652 * 6 5 4 8 8 C 1.50703 * 109.54089 * 178.63036 * 6 5 4 9 9 O 1.21276 * 120.00404 * 355.19362 * 8 6 5 10 10 N 1.34775 * 119.99594 * 175.19560 * 8 6 5 11 11 C 1.46504 * 119.99714 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.47211 * 179.97438 * 11 10 8 13 13 H 1.09011 * 109.46860 * 65.00511 * 12 11 10 14 14 C 1.53001 * 109.47504 * 185.00262 * 12 11 10 15 15 O 1.42900 * 109.46674 * 55.00120 * 14 12 11 16 16 N 1.46899 * 109.47529 * 305.00517 * 12 11 10 17 17 C 1.46899 * 111.00148 * 154.99815 * 16 12 11 18 18 C 1.50703 * 109.47146 * 180.02562 * 17 16 12 19 19 O 1.21295 * 120.00044 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00103 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99754 * 179.97438 * 20 18 17 22 22 H 1.07992 * 120.00150 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99579 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00224 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47268 * 89.99944 * 25 23 21 27 27 H 1.48504 * 109.47392 * 210.00051 * 25 23 21 28 28 H 1.48507 * 109.46783 * 329.99992 * 25 23 21 29 29 C 1.47015 * 110.99783 * 236.37072 * 2 1 3 30 30 H 1.09001 * 109.47450 * 56.04599 * 1 2 3 31 31 H 1.09007 * 109.47081 * 176.04233 * 1 2 3 32 32 H 1.08998 * 109.47385 * 296.04208 * 1 2 3 33 33 H 1.09002 * 109.50934 * 297.54561 * 3 2 1 34 34 H 1.09003 * 109.50733 * 57.63155 * 3 2 1 35 35 H 1.09004 * 109.50456 * 176.81005 * 4 3 2 36 36 H 1.09008 * 109.50567 * 296.93791 * 4 3 2 37 37 H 0.96995 * 120.00655 * 0.02562 * 10 8 6 38 38 H 1.08995 * 109.47317 * 300.00624 * 11 10 8 39 39 H 1.09001 * 109.46942 * 60.00253 * 11 10 8 40 40 H 1.09000 * 109.47470 * 175.00510 * 14 12 11 41 41 H 1.09007 * 109.47133 * 295.00526 * 14 12 11 42 42 H 0.96702 * 113.99663 * 180.02562 * 15 14 12 43 43 H 1.00904 * 110.99783 * 278.95407 * 16 12 11 44 44 H 1.09007 * 109.46925 * 299.99778 * 17 16 12 45 45 H 1.08993 * 109.47406 * 60.00108 * 17 16 12 46 46 H 0.96995 * 120.00109 * 359.97438 * 20 18 17 47 47 H 0.97005 * 119.99891 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.50639 * 302.32307 * 29 2 1 49 49 H 1.08997 * 109.50950 * 62.41687 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3274 0.0608 5 8 4.0174 0.5576 -1.0404 6 6 3.5249 -0.7848 -1.0710 7 1 3.8385 -1.3083 -0.1679 8 6 4.0741 -1.4957 -2.2811 9 8 4.7434 -0.8881 -3.0895 10 7 3.8213 -2.8067 -2.4647 11 6 4.3547 -3.4977 -3.6413 12 6 3.9254 -4.9658 -3.6088 13 1 2.8413 -5.0295 -3.7039 14 6 4.5839 -5.7157 -4.7686 15 8 6.0002 -5.5347 -4.7097 16 7 4.3417 -5.5698 -2.3361 17 6 3.4906 -6.7174 -1.9946 18 6 3.9464 -7.3090 -0.6857 19 8 4.8880 -6.8228 -0.0956 20 7 3.3085 -8.3790 -0.1713 21 6 3.7236 -8.9175 1.0192 22 1 4.5619 -8.4846 1.5446 23 6 3.0656 -10.0203 1.5498 24 7 2.0458 -10.5475 0.9102 25 14 3.6306 -10.7537 3.1722 26 1 2.9083 -10.0964 4.2909 27 1 3.3417 -12.2103 3.1845 28 1 5.0912 -10.5374 3.3312 29 6 1.9958 -0.7601 -1.1428 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 -0.3634 0.4512 0.9233 33 1 1.6826 1.8826 -0.9110 34 1 1.6127 1.9095 0.8678 35 1 3.9215 2.3412 0.0039 36 1 3.8385 0.8653 0.9969 37 1 3.2857 -3.2926 -1.8184 38 1 3.9696 -3.0260 -4.5453 39 1 5.4431 -3.4376 -3.6356 40 1 4.3498 -6.7776 -4.6943 41 1 4.2068 -5.3258 -5.7141 42 1 6.4837 -5.9834 -5.4168 43 1 5.3144 -5.8364 -2.3634 44 1 2.4556 -6.3876 -1.9031 45 1 3.5640 -7.4703 -2.7792 46 1 2.5558 -8.7681 -0.6434 47 1 1.5867 -11.3176 1.2804 48 1 1.6133 -1.7802 -1.1088 49 1 1.6821 -0.2845 -2.0720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507182040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:45 Heat of formation + Delta-G solvation = -150.029277 kcal Electronic energy + Delta-G solvation = -30846.336885 eV Core-core repulsion = 26422.872474 eV Total energy + Delta-G solvation = -4423.464411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43717 -39.09310 -38.41836 -37.61643 -35.96298 -35.40542 -34.14056 -33.65047 -31.89060 -31.25584 -30.06024 -28.99614 -26.32573 -26.19021 -24.63426 -24.38634 -23.88443 -21.08224 -20.92896 -20.23254 -19.35627 -18.03732 -17.67753 -17.46249 -16.90990 -16.30366 -16.15469 -15.81786 -15.55196 -15.39154 -15.22163 -14.99819 -14.82383 -14.52169 -14.26429 -14.19560 -13.96327 -13.81855 -13.55843 -13.23061 -13.14426 -12.67700 -12.42805 -12.26362 -12.09967 -11.98765 -11.84125 -11.70943 -11.62497 -11.49440 -11.29862 -11.06670 -11.01890 -10.41459 -10.25317 -10.19533 -9.94540 -9.68290 -9.53617 -8.95062 -8.78299 -8.52603 -8.14122 -7.99201 -6.44871 -3.85593 2.59965 2.81004 3.16055 3.25054 3.30946 3.44585 3.82927 3.86940 3.96217 4.13821 4.37149 4.49120 4.60284 4.61983 4.71450 4.77428 4.88338 4.93483 5.03507 5.10709 5.14622 5.16673 5.17811 5.20704 5.25826 5.27252 5.41385 5.42520 5.46966 5.55128 5.62199 5.66527 5.73456 5.89784 6.03642 6.21917 6.47609 6.50966 6.54823 6.83329 7.10346 7.42890 7.52669 7.60210 7.62785 8.03308 8.27937 8.57888 9.15186 9.50824 10.02250 10.72811 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.002693 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.606079 B =10396.249418 C =12600.664693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.015 3.985 4 C 0.061 3.939 5 O -0.357 6.357 6 C 0.077 3.923 7 H 0.097 0.903 8 C 0.521 3.479 9 O -0.528 6.528 10 N -0.708 5.708 11 C 0.139 3.861 12 C 0.075 3.925 13 H 0.094 0.906 14 C 0.046 3.954 15 O -0.565 6.565 16 N -0.659 5.659 17 C 0.047 3.953 18 C 0.440 3.560 19 O -0.580 6.580 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.030 3.970 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.409 0.591 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.380 0.620 43 H 0.364 0.636 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.094 0.906 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 16.734 -9.383 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.113 4.113 4 C -0.016 4.016 5 O -0.275 6.275 6 C 0.015 3.985 7 H 0.115 0.885 8 C 0.305 3.695 9 O -0.404 6.404 10 N -0.361 5.361 11 C 0.015 3.985 12 C -0.036 4.036 13 H 0.112 0.888 14 C -0.034 4.034 15 O -0.370 6.370 16 N -0.293 5.293 17 C -0.085 4.085 18 C 0.225 3.775 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.098 4.098 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.245 0.755 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.227 0.773 43 H 0.185 0.815 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.875 17.965 -8.304 20.168 hybrid contribution -0.723 -1.757 -0.832 2.074 sum -4.598 16.208 -9.136 19.165 Atomic orbital electron populations 1.22404 0.86294 1.02551 1.01100 1.62190 1.08644 1.13631 1.41971 1.22860 0.96756 0.89803 1.01924 1.22771 0.92028 0.96611 0.90156 1.88122 1.69348 1.21788 1.48197 1.21947 0.92850 0.85585 0.98069 0.88510 1.19947 0.80830 0.82255 0.86494 1.90706 1.38456 1.66293 1.44936 1.45689 1.54718 1.08847 1.26858 1.21208 1.00440 0.89676 0.87191 1.21990 0.99482 0.93838 0.88324 0.88767 1.22839 0.82248 0.99434 0.98858 1.86500 1.17958 1.77125 1.55422 1.60142 1.09071 1.31357 1.28752 1.21758 0.97976 0.92215 0.96573 1.19767 0.86521 0.83415 0.87761 1.90550 1.30439 1.62791 1.62583 1.41859 1.30353 1.26475 1.21359 1.19703 1.14948 1.10567 0.97607 0.87907 1.25253 0.95975 0.96913 0.99757 1.69610 1.21074 1.24095 1.39621 0.85866 0.79265 0.77831 0.81393 1.20358 1.20959 1.19395 1.22684 0.94147 1.00279 0.92722 0.95415 0.90780 0.90871 0.93754 0.89314 0.87857 0.91774 0.75478 0.91596 0.90189 0.92972 0.93094 0.77254 0.81459 0.89640 0.93924 0.77534 0.91883 0.88761 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.63 60.06 0.58 0.76 16 2 N -0.54 -5.20 4.99 -242.59 -1.21 -6.41 16 3 C 0.01 0.13 5.66 -3.71 -0.02 0.11 16 4 C 0.06 0.59 7.02 37.21 0.26 0.85 16 5 O -0.36 -4.87 10.01 -55.04 -0.55 -5.42 16 6 C 0.08 0.97 3.22 -27.83 -0.09 0.88 16 7 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 8 C 0.52 7.54 7.18 -10.98 -0.08 7.46 16 9 O -0.53 -9.69 16.51 -14.25 -0.24 -9.93 16 10 N -0.71 -8.84 5.35 -60.29 -0.32 -9.16 16 11 C 0.14 1.69 5.26 -4.04 -0.02 1.67 16 12 C 0.07 0.82 2.57 -67.71 -0.17 0.64 16 13 H 0.09 0.86 7.80 -51.92 -0.40 0.46 16 14 C 0.05 0.44 6.72 37.16 0.25 0.69 16 15 O -0.56 -5.96 12.05 -35.23 -0.42 -6.38 16 16 N -0.66 -9.68 5.32 -107.99 -0.57 -10.25 16 17 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 18 C 0.44 9.89 7.82 -10.99 -0.09 9.80 16 19 O -0.58 -15.31 15.78 5.54 0.09 -15.22 16 20 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 C 0.03 0.31 4.89 -3.71 -0.02 0.29 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.41 4.77 8.00 -40.82 -0.33 4.44 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.18 7.39 -51.93 -0.38 0.79 16 40 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 41 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.38 2.37 9.12 45.56 0.42 2.79 16 43 H 0.36 6.17 7.64 -39.29 -0.30 5.87 16 44 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 45 H 0.04 0.61 7.36 -51.93 -0.38 0.23 16 46 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 47 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.09 0.85 7.97 -51.93 -0.41 0.44 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -35.40 403.88 -8.25 -43.65 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -7.08 Total: 18.35 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 0.33 Total: 16.07 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -1.44 Total: -62.95 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.12 Total: -36.95 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.40 -8.25 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507182040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.378 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds