Wall clock time and date at job start Wed Apr 1 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47357 * 2 1 4 4 C 1.35961 * 117.00480 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.99198 * 180.02562 * 4 3 2 6 6 C 1.38084 * 120.02050 * 180.02562 * 5 4 3 7 7 C 1.38844 * 119.98529 * 359.97438 * 6 5 4 8 8 N 1.40108 * 120.02048 * 180.02562 * 7 6 5 9 9 C 1.46506 * 119.99483 * 292.30852 * 8 7 6 10 10 C 1.50699 * 109.46897 * 271.65849 * 9 8 7 11 11 H 1.08002 * 120.00163 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99755 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99742 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46931 * 60.00131 * 14 12 10 16 16 H 1.48508 * 109.46785 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47134 * 299.99510 * 14 12 10 18 18 C 1.34772 * 120.00663 * 112.30440 * 8 7 6 19 19 O 1.21295 * 120.00006 * 5.19805 * 18 8 7 20 20 C 1.50699 * 120.00263 * 185.19962 * 18 8 7 21 21 H 1.08999 * 110.54895 * 36.57497 * 20 18 8 22 22 C 1.54841 * 110.61341 * 159.44087 * 20 18 8 23 23 C 1.55847 * 103.51838 * 118.66271 * 22 20 18 24 24 H 1.09008 * 115.57850 * 159.64591 * 23 22 20 25 25 C 1.55848 * 105.03446 * 288.27083 * 23 22 20 26 26 C 1.54832 * 103.51742 * 71.73030 * 25 23 22 27 27 C 1.55849 * 103.52296 * 0.02562 * 26 25 23 28 28 H 1.08995 * 115.58386 * 159.64088 * 27 26 25 29 29 N 1.50653 * 101.02990 * 32.99490 * 23 22 20 30 30 C 1.38853 * 119.96932 * 0.27151 * 7 6 5 31 31 C 1.38090 * 119.98341 * 359.46950 * 30 7 6 32 32 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46997 * 299.99593 * 1 2 3 34 34 H 1.09000 * 109.47545 * 59.99548 * 1 2 3 35 35 H 1.09004 * 109.46552 * 240.00619 * 2 1 3 36 36 H 1.08992 * 109.47323 * 120.00650 * 2 1 3 37 37 H 1.08007 * 119.99050 * 359.97438 * 5 4 3 38 38 H 1.07999 * 120.01246 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.47411 * 31.65947 * 9 8 7 40 40 H 1.09004 * 109.46947 * 151.65860 * 9 8 7 41 41 H 0.97000 * 119.99795 * 180.02562 * 13 12 10 42 42 H 1.08994 * 110.61029 * 0.15150 * 22 20 18 43 43 H 1.08999 * 110.60798 * 237.17389 * 22 20 18 44 44 H 1.09000 * 110.61424 * 190.24164 * 25 23 22 45 45 H 1.09001 * 110.60980 * 313.21875 * 25 23 22 46 46 H 1.08998 * 110.60945 * 118.51231 * 26 25 23 47 47 H 1.09002 * 110.61149 * 241.49157 * 26 25 23 48 48 H 1.00901 * 111.00131 * 62.34432 * 29 23 22 49 49 H 1.08004 * 120.00687 * 179.72922 * 30 7 6 50 50 H 1.07996 * 119.99524 * 180.22478 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5254 -0.0005 5 6 3.8842 2.8074 0.0000 6 6 5.2530 2.9890 -0.0011 7 6 6.0991 1.8882 -0.0022 8 7 7.4882 2.0716 -0.0027 9 6 8.1506 2.6457 -1.1766 10 6 8.5132 1.5434 -2.1380 11 1 8.2745 0.5177 -1.8984 12 6 9.1507 1.8441 -3.3230 13 7 9.4418 3.0931 -3.6145 14 14 9.5995 0.4777 -4.5151 15 1 8.3667 -0.2323 -4.9410 16 1 10.2711 1.0597 -5.7049 17 1 10.5169 -0.4801 -3.8474 18 6 8.2149 1.7201 1.0765 19 8 7.6815 1.1589 2.0102 20 6 9.6901 2.0243 1.1232 21 1 9.8984 2.9827 0.6476 22 6 10.2019 2.0184 2.5846 23 6 11.2629 0.8769 2.5944 24 1 11.9890 0.9162 3.4065 25 6 10.4389 -0.4419 2.4916 26 6 9.9271 -0.4359 1.0303 27 6 10.5109 0.8853 0.4451 28 1 10.5718 0.9321 -0.6421 29 7 11.8130 0.9828 1.1958 30 6 5.5681 0.6052 -0.0078 31 6 4.1990 0.4250 -0.0014 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8932 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8898 37 1 3.2260 3.6637 0.0004 38 1 5.6655 3.9872 -0.0011 39 1 7.4767 3.3483 -1.6668 40 1 9.0552 3.1676 -0.8643 41 1 9.8900 3.3047 -4.4484 42 1 9.3891 1.7928 3.2748 43 1 10.6637 2.9739 2.8332 44 1 11.0762 -1.3076 2.6715 45 1 9.6030 -0.4275 3.1910 46 1 10.3108 -1.2988 0.4859 47 1 8.8375 -0.4187 1.0053 48 1 12.2505 1.8796 1.0463 49 1 6.2257 -0.2515 -0.0131 50 1 3.7858 -0.5728 -0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578181791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:04 Heat of formation + Delta-G solvation = -38.123040 kcal Electronic energy + Delta-G solvation = -31491.027615 eV Core-core repulsion = 27483.265085 eV Total energy + Delta-G solvation = -4007.762530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.29844 -41.14387 -39.88946 -38.20433 -36.50898 -34.52260 -32.81425 -31.95737 -31.78989 -31.00894 -30.36661 -29.80459 -28.62666 -25.26671 -24.87544 -24.38613 -23.19941 -22.41237 -21.77102 -21.01381 -19.50365 -19.24637 -18.64769 -18.39009 -17.68429 -17.57810 -17.17380 -17.02438 -16.68494 -16.33020 -15.63481 -15.45462 -14.89767 -14.64034 -14.45486 -14.28693 -14.26419 -13.97209 -13.72577 -13.63822 -13.42336 -13.32344 -13.20794 -12.96036 -12.90998 -12.86577 -12.74736 -12.65481 -12.58792 -12.40271 -12.10613 -11.99068 -11.84549 -11.73205 -11.66733 -11.59408 -10.98384 -10.86607 -10.54568 -10.02878 -9.88065 -9.73961 -8.90241 -8.19935 -6.32291 0.30975 0.36518 1.40822 1.42200 1.48383 1.66873 2.13950 2.26990 2.41772 2.71853 3.09039 3.14677 3.58062 3.69419 3.78868 3.86186 3.90030 4.02098 4.06029 4.16629 4.17656 4.23170 4.28184 4.32244 4.35948 4.38186 4.45247 4.54177 4.57844 4.66224 4.73903 4.88395 4.92701 4.95320 4.99092 5.00353 5.07030 5.08988 5.16699 5.19469 5.22435 5.25122 5.31439 5.35050 5.50831 5.58206 5.58673 5.69954 5.99624 6.04848 6.38272 6.42661 6.50966 6.77680 7.28630 7.40186 8.85160 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009131 B = 0.004127 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.830407 B = 6783.597705 C = 8591.617310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.325 6.325 4 C 0.118 3.882 5 C -0.142 4.142 6 C -0.094 4.094 7 C 0.103 3.897 8 N -0.558 5.558 9 C 0.256 3.744 10 C -0.531 4.531 11 H 0.049 0.951 12 C 0.031 3.969 13 N -0.916 5.916 14 Si 0.944 3.056 15 H -0.278 1.278 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.534 3.466 19 O -0.572 6.572 20 C -0.137 4.137 21 H 0.091 0.909 22 C -0.138 4.138 23 C 0.059 3.941 24 H 0.145 0.855 25 C -0.105 4.105 26 C -0.122 4.122 27 C 0.076 3.924 28 H 0.109 0.891 29 N -0.646 5.646 30 C -0.079 4.079 31 C -0.195 4.195 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.016 0.984 40 H 0.039 0.961 41 H 0.267 0.733 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.338 0.662 49 H 0.108 0.892 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -3.732 9.539 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.073 3.927 5 C -0.161 4.161 6 C -0.114 4.114 7 C 0.012 3.988 8 N -0.285 5.285 9 C 0.136 3.864 10 C -0.570 4.570 11 H 0.067 0.933 12 C -0.170 4.170 13 N -0.555 5.555 14 Si 0.770 3.230 15 H -0.204 1.204 16 H -0.207 1.207 17 H -0.193 1.193 18 C 0.324 3.676 19 O -0.453 6.453 20 C -0.160 4.160 21 H 0.109 0.891 22 C -0.177 4.177 23 C -0.051 4.051 24 H 0.163 0.837 25 C -0.143 4.143 26 C -0.160 4.160 27 C -0.035 4.035 28 H 0.127 0.873 29 N -0.273 5.273 30 C -0.099 4.099 31 C -0.214 4.214 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.171 0.829 38 H 0.152 0.848 39 H 0.034 0.966 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.153 0.847 49 H 0.126 0.874 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.892 -4.482 9.743 12.748 hybrid contribution -0.145 0.283 -1.156 1.199 sum -7.037 -4.198 8.587 11.870 Atomic orbital electron populations 1.21791 0.90933 1.04219 1.03341 1.23089 0.97243 0.80907 1.02088 1.86046 1.17999 1.31174 1.88743 1.18969 0.82766 0.93957 0.97055 1.20417 0.94033 0.95791 1.05867 1.21124 0.92764 0.98466 0.99024 1.17810 0.83744 0.93616 1.03646 1.45836 1.04423 1.61650 1.16592 1.19219 0.92363 0.93493 0.81326 1.21418 1.38512 0.93495 1.03553 0.93258 1.25468 0.95404 0.97232 0.98906 1.69980 1.41635 1.18623 1.25246 0.85816 0.78474 0.79920 0.78806 1.20351 1.20658 1.19343 1.20583 0.89258 0.76958 0.80775 1.90572 1.73392 1.43453 1.37892 1.23084 0.91416 1.01908 0.99562 0.89124 1.23328 1.00072 1.00709 0.93593 1.24408 0.94440 0.93879 0.92339 0.83725 1.22519 0.98739 0.97879 0.95191 1.22625 0.99136 0.96981 0.97234 1.24093 0.87917 0.93066 0.98426 0.87315 1.65953 1.19241 1.37309 1.04791 1.21012 0.95165 0.96141 0.97598 1.21232 0.92729 0.99288 1.08197 0.88162 0.91570 0.91725 0.91548 0.91364 0.82914 0.84807 0.96582 0.94366 0.92341 0.90572 0.89402 0.90431 0.91788 0.91981 0.93300 0.84653 0.87369 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.04 0.81 5.46 71.98 0.39 1.20 16 3 O -0.33 -8.79 10.14 -93.11 -0.94 -9.73 16 4 C 0.12 3.69 6.69 22.50 0.15 3.84 16 5 C -0.14 -4.51 9.98 22.35 0.22 -4.29 16 6 C -0.09 -3.43 9.67 22.38 0.22 -3.21 16 7 C 0.10 4.23 4.84 38.11 0.18 4.42 16 8 N -0.56 -24.11 2.51 -635.16 -1.59 -25.70 16 9 C 0.26 12.14 5.00 85.63 0.43 12.57 16 10 C -0.53 -27.09 8.06 25.60 0.21 -26.88 16 11 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 12 C 0.03 1.59 5.46 84.66 0.46 2.05 16 13 N -0.92 -49.41 13.29 21.45 0.28 -49.12 16 14 Si 0.94 41.74 29.54 68.60 2.03 43.76 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 C 0.53 21.98 5.27 87.66 0.46 22.44 16 19 O -0.57 -25.07 13.93 -3.08 -0.04 -25.11 16 20 C -0.14 -4.87 2.31 -9.90 -0.02 -4.89 16 21 H 0.09 3.31 6.35 -2.39 -0.02 3.30 16 22 C -0.14 -3.97 5.86 32.21 0.19 -3.78 16 23 C 0.06 1.51 5.59 46.15 0.26 1.77 16 24 H 0.15 2.78 8.14 -2.38 -0.02 2.76 16 25 C -0.11 -3.07 6.43 32.20 0.21 -2.87 16 26 C -0.12 -4.33 6.09 32.20 0.20 -4.13 16 27 C 0.08 2.73 5.19 46.18 0.24 2.97 16 28 H 0.11 4.61 6.91 -2.39 -0.02 4.60 16 29 N -0.65 -19.08 7.71 -433.00 -3.34 -22.42 16 30 C -0.08 -3.09 9.35 22.38 0.21 -2.88 16 31 C -0.20 -6.30 9.03 22.35 0.20 -6.10 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.23 7.66 -2.38 -0.02 1.21 16 36 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 37 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.02 0.82 7.87 -2.39 -0.02 0.81 16 40 H 0.04 1.85 5.81 -2.39 -0.01 1.83 16 41 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.08 2.44 6.42 -2.39 -0.02 2.42 16 43 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.06 1.96 7.82 -2.39 -0.02 1.94 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 47 H 0.05 1.99 5.53 -2.39 -0.01 1.97 16 48 H 0.34 9.05 8.66 -89.69 -0.78 8.28 16 49 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 50 H 0.15 3.89 6.29 -2.91 -0.02 3.87 16 Total: -1.00 -61.26 393.26 1.52 -59.75 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: 0.18 Total: 37.67 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.94 Total: -9.09 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -4.65 Total: -97.25 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.99 Total: -34.84 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -61.26 1.52 -59.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578181791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.623 kcal (2) G-P(sol) polarization free energy of solvation -61.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds