Wall clock time and date at job start Wed Apr 1 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47599 * 2 1 4 4 C 1.42896 * 114.00633 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47629 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47352 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47434 * 179.97438 * 6 5 4 8 8 C 1.46897 * 111.00357 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.44842 * 324.96189 * 8 7 6 10 10 C 1.53037 * 109.46331 * 84.92879 * 8 7 6 11 11 C 1.52758 * 109.38517 * 181.25766 * 10 8 7 12 12 N 1.46920 * 109.01285 * 305.59736 * 11 10 8 13 13 C 1.34777 * 120.62767 * 233.58572 * 12 11 10 14 14 O 1.21279 * 120.00244 * 174.65167 * 13 12 11 15 15 C 1.50708 * 119.99980 * 354.64432 * 13 12 11 16 16 S 1.81005 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99821 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99644 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99596 * 179.72198 * 17 16 15 20 20 N 1.31632 * 119.99535 * 180.27502 * 19 17 16 21 21 Si 1.86797 * 120.00398 * 0.28057 * 19 17 16 22 22 H 1.48497 * 109.47515 * 89.99314 * 21 19 17 23 23 H 1.48496 * 109.47162 * 209.99920 * 21 19 17 24 24 H 1.48501 * 109.47011 * 329.99729 * 21 19 17 25 25 C 1.46928 * 118.74401 * 53.29991 * 12 11 10 26 26 H 1.09000 * 109.58130 * 66.43571 * 25 12 11 27 27 C 1.52999 * 109.58952 * 186.71615 * 25 12 11 28 28 C 1.53042 * 109.45867 * 205.00253 * 8 7 6 29 29 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47261 * 299.99955 * 1 2 3 31 31 H 1.09005 * 109.46575 * 60.00256 * 1 2 3 32 32 H 1.09004 * 109.46995 * 239.99698 * 2 1 3 33 33 H 1.09001 * 109.46854 * 120.00449 * 2 1 3 34 34 H 1.09003 * 109.46840 * 59.99595 * 4 3 2 35 35 H 1.08998 * 109.46947 * 300.00658 * 4 3 2 36 36 H 1.08998 * 109.47205 * 59.99617 * 5 4 3 37 37 H 1.09010 * 109.46697 * 299.99780 * 5 4 3 38 38 H 1.08998 * 109.47659 * 59.99428 * 6 5 4 39 39 H 1.09007 * 109.47102 * 299.99539 * 6 5 4 40 40 H 1.00900 * 111.00032 * 303.95576 * 7 6 5 41 41 H 1.08994 * 109.49716 * 301.34009 * 10 8 7 42 42 H 1.09007 * 109.49374 * 61.43759 * 10 8 7 43 43 H 1.09000 * 109.51472 * 185.70541 * 11 10 8 44 44 H 1.09002 * 109.42903 * 65.42825 * 11 10 8 45 45 H 1.08996 * 109.46884 * 60.00797 * 15 13 12 46 46 H 1.08996 * 109.46818 * 300.00030 * 15 13 12 47 47 H 0.97004 * 119.99386 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.46554 * 55.82565 * 27 25 12 49 49 H 1.08995 * 109.46735 * 175.82783 * 27 25 12 50 50 H 1.08996 * 109.47080 * 295.83016 * 27 25 12 51 51 H 1.08997 * 109.50167 * 58.66039 * 28 8 7 52 52 H 1.09000 * 109.52233 * 298.57519 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9382 0.0012 6 6 5.3507 3.0590 0.0012 7 7 5.7296 4.4783 0.0011 8 6 7.1903 4.6333 0.0017 9 1 7.6398 3.8348 0.5921 10 6 7.7115 4.5600 -1.4353 11 6 9.2335 4.6900 -1.4300 12 7 9.6065 5.9177 -0.7142 13 6 10.4081 6.8334 -1.2932 14 8 10.6306 7.8856 -0.7327 15 6 11.0282 6.5499 -2.6373 16 16 12.0436 7.9604 -3.1429 17 6 12.6289 7.3741 -4.6980 18 1 12.3299 6.3997 -5.0550 19 6 13.4692 8.1672 -5.4670 20 7 13.9021 7.7314 -6.6312 21 14 13.9858 9.8529 -4.8499 22 1 15.2362 9.7285 -4.0585 23 1 14.2199 10.7534 -6.0072 24 1 12.9120 10.4169 -3.9931 25 6 9.0840 6.1311 0.6423 26 1 9.5074 5.3880 1.3180 27 6 9.4606 7.5342 1.1222 28 6 7.5591 5.9876 0.6115 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8340 0.9763 -0.8892 35 1 3.8333 0.9766 0.8907 36 1 3.4224 3.4216 0.8911 37 1 3.4231 3.4220 -0.8889 38 1 5.7535 2.5758 -0.8889 39 1 5.7535 2.5751 0.8910 40 1 5.3145 4.9633 -0.7802 41 1 7.4283 3.6046 -1.8768 42 1 7.2815 5.3733 -2.0201 43 1 9.5983 4.7400 -2.4559 44 1 9.6694 3.8270 -0.9267 45 1 10.2410 6.3862 -3.3732 46 1 11.6526 5.6591 -2.5686 47 1 14.4896 8.2856 -7.1685 48 1 9.0955 8.2725 0.4082 49 1 9.0098 7.7178 2.0974 50 1 10.5448 7.6119 1.2027 51 1 7.1674 6.0482 1.6269 52 1 7.1305 6.7877 0.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671212307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:25 Heat of formation + Delta-G solvation = -83.512514 kcal Electronic energy + Delta-G solvation = -27660.760042 eV Core-core repulsion = 23786.473229 eV Total energy + Delta-G solvation = -3874.286814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46398 -38.70685 -38.04672 -35.91551 -33.46263 -33.16858 -32.44746 -31.56826 -29.97542 -28.87163 -27.27208 -25.61183 -25.08095 -23.57272 -23.24468 -22.23091 -21.82890 -20.93091 -19.10089 -17.62476 -17.17316 -16.88761 -16.54762 -16.04188 -15.84107 -15.57931 -15.39410 -14.99357 -14.94204 -14.58359 -14.36024 -14.08994 -13.63123 -13.48174 -13.24232 -13.18173 -13.03872 -12.79370 -12.55118 -12.36840 -12.29724 -12.09663 -12.09000 -11.96837 -11.70251 -11.59677 -11.41644 -11.31881 -11.27145 -11.10224 -11.01537 -10.95784 -10.73365 -10.58114 -10.06022 -9.85556 -9.01188 -8.78492 -8.76390 -8.50596 -8.48987 -6.92244 -6.29883 -4.01397 2.70897 2.93641 3.08044 3.18604 3.32528 3.49884 3.58350 3.83907 4.32186 4.40808 4.48008 4.49986 4.56623 4.61838 4.71238 4.73766 4.80633 4.84295 4.88511 4.88845 4.98035 5.03601 5.08217 5.09333 5.13903 5.19206 5.27660 5.29625 5.34337 5.36948 5.41805 5.51690 5.62807 5.66152 5.69813 5.72693 5.74696 5.79544 5.85595 5.86539 5.98980 6.00510 6.29383 6.47119 6.65450 6.75951 6.80603 7.00621 7.51108 7.93115 8.40201 8.49051 9.16470 10.79339 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.001734 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.128090 B =16146.013804 C =17267.256713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.117 4.117 6 C 0.062 3.938 7 N -0.684 5.684 8 C 0.090 3.910 9 H 0.078 0.922 10 C -0.165 4.165 11 C 0.112 3.888 12 N -0.616 5.616 13 C 0.533 3.467 14 O -0.509 6.509 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.087 0.913 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.147 3.853 26 H 0.067 0.933 27 C -0.136 4.136 28 C -0.117 4.117 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.344 0.656 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.271 0.729 48 H 0.074 0.926 49 H 0.039 0.961 50 H 0.073 0.927 51 H 0.080 0.920 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.253 -15.615 15.552 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.013 4.013 5 C -0.155 4.155 6 C -0.067 4.067 7 N -0.314 5.314 8 C -0.020 4.020 9 H 0.097 0.903 10 C -0.205 4.205 11 C -0.012 4.012 12 N -0.352 5.352 13 C 0.321 3.679 14 O -0.384 6.384 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.105 0.895 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.043 3.957 26 H 0.085 0.915 27 C -0.193 4.193 28 C -0.156 4.156 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.162 0.838 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.058 0.942 50 H 0.092 0.908 51 H 0.098 0.902 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.002 -13.800 16.907 30.990 hybrid contribution 0.473 -1.316 -1.762 2.249 sum -21.529 -15.115 15.145 30.353 Atomic orbital electron populations 1.21749 0.93666 1.02295 1.03227 1.22461 0.95693 0.83744 1.00058 1.87881 1.21169 1.26504 1.95439 1.22420 0.81259 0.97449 1.00151 1.21460 0.95172 0.94820 1.04055 1.21849 0.94573 0.89548 1.00775 1.60539 1.09000 1.11541 1.50310 1.21573 0.87084 0.98489 0.94859 0.90345 1.22595 0.96796 1.02636 0.98498 1.21534 0.94375 0.86977 0.98309 1.48131 1.49942 1.20940 1.16208 1.20241 0.77838 0.83166 0.86622 1.90748 1.60025 1.24408 1.63252 1.23377 1.02776 1.04985 0.96318 1.84766 1.59851 1.21753 1.25178 1.22309 1.34739 1.07191 1.02639 0.89496 1.24709 0.94352 0.98296 0.93913 1.69942 1.32798 1.37871 1.11104 0.86731 0.81375 0.84038 0.79690 1.19219 1.19958 1.15911 1.21242 0.92785 0.99008 0.82647 0.91521 1.22207 1.03026 0.94670 0.99406 1.21993 0.94887 0.96597 1.02113 0.91070 0.91799 0.91801 0.93424 0.93421 0.93415 0.93264 0.90151 0.91167 0.94948 0.90851 0.83811 0.90898 0.90932 0.89094 0.91466 0.88806 0.88740 0.91958 0.90731 0.94191 0.90781 0.90192 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.34 6.66 37.16 0.25 0.59 16 3 O -0.39 -3.28 10.34 -35.23 -0.36 -3.65 16 4 C 0.06 0.42 5.94 37.15 0.22 0.64 16 5 C -0.12 -0.78 5.84 -26.74 -0.16 -0.93 16 6 C 0.06 0.39 5.48 -3.83 -0.02 0.37 16 7 N -0.68 -5.15 6.25 -106.68 -0.67 -5.82 16 8 C 0.09 0.73 2.43 -67.67 -0.16 0.56 16 9 H 0.08 0.62 7.80 -51.93 -0.40 0.21 16 10 C -0.17 -1.39 5.32 -26.84 -0.14 -1.53 16 11 C 0.11 1.14 6.30 -3.94 -0.02 1.12 16 12 N -0.62 -8.14 2.98 -165.48 -0.49 -8.63 16 13 C 0.53 9.40 7.62 -10.98 -0.08 9.31 16 14 O -0.51 -10.43 11.26 5.56 0.06 -10.37 16 15 C -0.12 -2.39 4.56 36.01 0.16 -2.23 16 16 S -0.14 -3.57 18.54 -107.50 -1.99 -5.57 16 17 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 18 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 21 Si 0.86 21.75 27.74 -169.99 -4.72 17.04 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.24 -5.96 6.73 56.52 0.38 -5.58 16 25 C 0.15 1.70 3.49 -67.60 -0.24 1.46 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 C -0.14 -1.84 7.60 37.16 0.28 -1.56 16 28 C -0.12 -1.13 4.98 -26.61 -0.13 -1.26 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.03 0.20 7.41 -51.93 -0.38 -0.19 16 39 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 40 H 0.34 2.53 8.48 -39.29 -0.33 2.20 16 41 H 0.07 0.52 7.42 -51.93 -0.39 0.13 16 42 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.09 0.98 5.96 -51.93 -0.31 0.67 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.70 7.47 -51.92 -0.39 1.31 16 46 H 0.09 1.72 8.12 -51.92 -0.42 1.30 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.07 1.18 6.73 -51.93 -0.35 0.83 16 49 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 51 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 416.76 15.07 6.28 6.28 Total: -1.00 -32.78 416.76 -10.23 -43.01 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -9.67 Total: -0.83 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.55 Total: -5.76 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.38 Total: -40.16 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.30 Total: -14.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.78 -10.23 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671212307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.501 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds