Wall clock time and date at job start Wed Apr 1 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47599 * 2 1 4 4 C 1.42896 * 114.00633 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47629 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47352 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47434 * 179.97438 * 6 5 4 8 8 C 1.46897 * 111.00357 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.44842 * 324.96189 * 8 7 6 10 10 C 1.53037 * 109.46331 * 84.92879 * 8 7 6 11 11 C 1.52758 * 109.38517 * 181.25766 * 10 8 7 12 12 N 1.46920 * 109.01285 * 305.59736 * 11 10 8 13 13 C 1.34777 * 120.62767 * 233.58572 * 12 11 10 14 14 O 1.21279 * 120.00244 * 174.65167 * 13 12 11 15 15 C 1.50708 * 119.99980 * 354.64432 * 13 12 11 16 16 S 1.81005 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99821 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99644 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99596 * 179.72198 * 17 16 15 20 20 N 1.31632 * 119.99535 * 180.27502 * 19 17 16 21 21 Si 1.86797 * 120.00398 * 0.28057 * 19 17 16 22 22 H 1.48497 * 109.47515 * 89.99314 * 21 19 17 23 23 H 1.48496 * 109.47162 * 209.99920 * 21 19 17 24 24 H 1.48501 * 109.47011 * 329.99729 * 21 19 17 25 25 C 1.46928 * 118.74401 * 53.29991 * 12 11 10 26 26 H 1.09000 * 109.58130 * 66.43571 * 25 12 11 27 27 C 1.52999 * 109.58952 * 186.71615 * 25 12 11 28 28 C 1.53042 * 109.45867 * 205.00253 * 8 7 6 29 29 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47261 * 299.99955 * 1 2 3 31 31 H 1.09005 * 109.46575 * 60.00256 * 1 2 3 32 32 H 1.09004 * 109.46995 * 239.99698 * 2 1 3 33 33 H 1.09001 * 109.46854 * 120.00449 * 2 1 3 34 34 H 1.09003 * 109.46840 * 59.99595 * 4 3 2 35 35 H 1.08998 * 109.46947 * 300.00658 * 4 3 2 36 36 H 1.08998 * 109.47205 * 59.99617 * 5 4 3 37 37 H 1.09010 * 109.46697 * 299.99780 * 5 4 3 38 38 H 1.08998 * 109.47659 * 59.99428 * 6 5 4 39 39 H 1.09007 * 109.47102 * 299.99539 * 6 5 4 40 40 H 1.00900 * 111.00032 * 303.95576 * 7 6 5 41 41 H 1.08994 * 109.49716 * 301.34009 * 10 8 7 42 42 H 1.09007 * 109.49374 * 61.43759 * 10 8 7 43 43 H 1.09000 * 109.51472 * 185.70541 * 11 10 8 44 44 H 1.09002 * 109.42903 * 65.42825 * 11 10 8 45 45 H 1.08996 * 109.46884 * 60.00797 * 15 13 12 46 46 H 1.08996 * 109.46818 * 300.00030 * 15 13 12 47 47 H 0.97004 * 119.99386 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.46554 * 55.82565 * 27 25 12 49 49 H 1.08995 * 109.46735 * 175.82783 * 27 25 12 50 50 H 1.08996 * 109.47080 * 295.83016 * 27 25 12 51 51 H 1.08997 * 109.50167 * 58.66039 * 28 8 7 52 52 H 1.09000 * 109.52233 * 298.57519 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9382 0.0012 6 6 5.3507 3.0590 0.0012 7 7 5.7296 4.4783 0.0011 8 6 7.1903 4.6333 0.0017 9 1 7.6398 3.8348 0.5921 10 6 7.7115 4.5600 -1.4353 11 6 9.2335 4.6900 -1.4300 12 7 9.6065 5.9177 -0.7142 13 6 10.4081 6.8334 -1.2932 14 8 10.6306 7.8856 -0.7327 15 6 11.0282 6.5499 -2.6373 16 16 12.0436 7.9604 -3.1429 17 6 12.6289 7.3741 -4.6980 18 1 12.3299 6.3997 -5.0550 19 6 13.4692 8.1672 -5.4670 20 7 13.9021 7.7314 -6.6312 21 14 13.9858 9.8529 -4.8499 22 1 15.2362 9.7285 -4.0585 23 1 14.2199 10.7534 -6.0072 24 1 12.9120 10.4169 -3.9931 25 6 9.0840 6.1311 0.6423 26 1 9.5074 5.3880 1.3180 27 6 9.4606 7.5342 1.1222 28 6 7.5591 5.9876 0.6115 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8340 0.9763 -0.8892 35 1 3.8333 0.9766 0.8907 36 1 3.4224 3.4216 0.8911 37 1 3.4231 3.4220 -0.8889 38 1 5.7535 2.5758 -0.8889 39 1 5.7535 2.5751 0.8910 40 1 5.3145 4.9633 -0.7802 41 1 7.4283 3.6046 -1.8768 42 1 7.2815 5.3733 -2.0201 43 1 9.5983 4.7400 -2.4559 44 1 9.6694 3.8270 -0.9267 45 1 10.2410 6.3862 -3.3732 46 1 11.6526 5.6591 -2.5686 47 1 14.4896 8.2856 -7.1685 48 1 9.0955 8.2725 0.4082 49 1 9.0098 7.7178 2.0974 50 1 10.5448 7.6119 1.2027 51 1 7.1674 6.0482 1.6269 52 1 7.1305 6.7877 0.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671212307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:24 Heat of formation + Delta-G solvation = -105.070083 kcal Electronic energy + Delta-G solvation = -27661.694849 eV Core-core repulsion = 23786.473229 eV Total energy + Delta-G solvation = -3875.221620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57739 -39.33628 -38.87874 -36.76807 -34.68188 -34.36257 -33.97453 -32.13332 -30.88030 -30.00458 -28.26665 -27.82079 -25.74602 -24.33088 -23.68125 -23.22080 -22.37085 -21.74006 -20.44043 -19.45140 -17.83680 -17.67086 -17.38103 -17.24731 -17.04244 -16.83308 -16.26955 -16.15900 -15.82000 -15.57143 -15.18281 -15.02024 -14.95046 -14.83626 -14.57525 -14.10951 -13.94286 -13.54573 -13.45315 -13.40751 -13.30589 -13.22662 -13.04032 -12.92380 -12.84549 -12.63771 -12.52371 -12.43631 -12.24537 -12.03151 -11.90413 -11.87492 -11.86538 -11.66056 -11.47743 -11.17812 -10.54716 -10.52412 -10.12527 -9.62758 -9.31813 -8.99894 -8.52423 -6.22944 0.98078 1.30504 1.45707 1.53969 1.56643 2.07573 2.24280 2.60174 2.68254 2.85990 3.24677 3.52361 3.71781 3.90525 4.00043 4.02863 4.09775 4.15975 4.17546 4.19348 4.24943 4.27968 4.37977 4.40894 4.43353 4.46696 4.48434 4.49821 4.58608 4.61143 4.71735 4.78413 4.86118 4.87206 4.92995 4.96233 5.02035 5.08309 5.14461 5.19611 5.23083 5.28471 5.33673 5.42062 5.69676 5.73331 6.09029 6.09981 6.29284 6.31268 6.43514 6.92931 7.16753 8.59942 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.001734 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.128090 B =16146.013804 C =17267.256713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.416 6.416 4 C 0.063 3.937 5 C -0.111 4.111 6 C 0.067 3.933 7 N -0.689 5.689 8 C 0.097 3.903 9 H 0.092 0.908 10 C -0.157 4.157 11 C 0.104 3.896 12 N -0.604 5.604 13 C 0.532 3.468 14 O -0.546 6.546 15 C -0.109 4.109 16 S -0.174 6.174 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.238 1.238 25 C 0.145 3.855 26 H 0.090 0.910 27 C -0.129 4.129 28 C -0.108 4.108 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.344 0.656 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.277 0.723 48 H 0.045 0.955 49 H 0.064 0.936 50 H 0.047 0.953 51 H 0.090 0.910 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.353 -17.173 17.043 33.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.014 4.014 5 C -0.149 4.149 6 C -0.062 4.062 7 N -0.319 5.319 8 C -0.013 4.013 9 H 0.110 0.890 10 C -0.197 4.197 11 C -0.019 4.019 12 N -0.339 5.339 13 C 0.319 3.681 14 O -0.424 6.424 15 C -0.260 4.260 16 S 0.053 5.947 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 C 0.043 3.957 26 H 0.108 0.892 27 C -0.187 4.187 28 C -0.147 4.147 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.162 0.838 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.066 0.934 51 H 0.109 0.891 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.134 -15.405 18.402 33.334 hybrid contribution 0.693 -0.979 -2.165 2.475 sum -22.441 -16.384 16.238 32.182 Atomic orbital electron populations 1.21777 0.93235 1.03309 1.02581 1.22634 0.96173 0.82938 1.00857 1.87850 1.22204 1.27997 1.95614 1.22488 0.80631 0.97327 1.00970 1.21379 0.95483 0.94931 1.03077 1.21828 0.94120 0.88799 1.01442 1.60501 1.08515 1.12417 1.50492 1.21479 0.87540 0.97738 0.94517 0.89022 1.22541 0.95077 1.03259 0.98823 1.21825 0.95929 0.86179 0.97952 1.48144 1.48146 1.20764 1.16805 1.19952 0.78632 0.83557 0.85926 1.90759 1.61712 1.26032 1.63871 1.23352 1.02270 1.02393 0.97953 1.84676 1.61352 1.25458 1.23226 1.22452 1.34695 1.06255 1.04250 0.92106 1.25543 0.94432 1.01764 0.94098 1.70018 1.33703 1.39482 1.12236 0.85873 0.80906 0.80046 0.79585 1.18683 1.18330 1.16144 1.21420 0.94243 0.98332 0.81739 0.89219 1.22039 1.01296 0.95337 0.99992 1.21892 0.92993 0.97169 1.02642 0.89254 0.92366 0.92495 0.92673 0.92504 0.92605 0.92340 0.91382 0.91880 0.94072 0.90232 0.83772 0.88825 0.92227 0.89758 0.88932 0.87646 0.87491 0.91383 0.93584 0.91772 0.93382 0.89108 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.05 0.53 6.66 71.98 0.48 1.01 16 3 O -0.42 -6.55 10.34 -148.98 -1.54 -8.09 16 4 C 0.06 0.71 5.94 71.98 0.43 1.13 16 5 C -0.11 -1.28 5.84 30.59 0.18 -1.11 16 6 C 0.07 0.66 5.48 86.30 0.47 1.13 16 7 N -0.69 -8.56 6.25 -491.44 -3.07 -11.63 16 8 C 0.10 1.26 2.43 44.94 0.11 1.37 16 9 H 0.09 1.03 7.80 -2.38 -0.02 1.01 16 10 C -0.16 -2.18 5.32 30.53 0.16 -2.01 16 11 C 0.10 1.83 6.30 86.22 0.54 2.38 16 12 N -0.60 -14.92 2.98 -795.85 -2.37 -17.29 16 13 C 0.53 18.49 7.62 87.66 0.67 19.15 16 14 O -0.55 -22.60 11.26 -3.03 -0.03 -22.63 16 15 C -0.11 -4.16 4.56 71.24 0.33 -3.83 16 16 S -0.17 -8.81 18.54 -56.49 -1.05 -9.86 16 17 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 18 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 19 C 0.05 2.77 5.50 84.86 0.47 3.23 16 20 N -0.92 -55.78 13.97 21.65 0.30 -55.48 16 21 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.24 -11.74 6.73 99.48 0.67 -11.07 16 25 C 0.15 3.05 3.49 44.98 0.16 3.21 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 C -0.13 -3.42 7.60 71.98 0.55 -2.87 16 28 C -0.11 -1.82 4.98 30.67 0.15 -1.67 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 38 H 0.04 0.35 7.41 -2.39 -0.02 0.34 16 39 H 0.08 0.72 8.05 -2.38 -0.02 0.70 16 40 H 0.34 4.36 8.48 -89.69 -0.76 3.60 16 41 H 0.09 0.97 7.42 -2.39 -0.02 0.96 16 42 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.08 1.63 5.96 -2.39 -0.01 1.62 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.11 3.77 7.47 -2.40 -0.02 3.75 16 46 H 0.11 3.81 8.12 -2.40 -0.02 3.79 16 47 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 48 H 0.05 1.47 6.73 -2.38 -0.02 1.46 16 49 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.05 1.51 6.76 -2.39 -0.02 1.50 16 51 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.27 416.76 0.34 -71.93 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.08 Total: 15.67 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 6.11 Total: -9.66 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -5.14 Total: -84.40 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.57 Total: -30.73 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -72.27 0.34 -71.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671212307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.138 kcal (2) G-P(sol) polarization free energy of solvation -72.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds