Wall clock time and date at job start Wed Apr 1 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47262 * 2 1 4 4 C 1.42902 * 113.99681 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46625 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46780 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.46836 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99673 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.45011 * 34.97028 * 8 7 6 10 10 C 1.53037 * 109.45963 * 275.00088 * 8 7 6 11 11 C 1.53196 * 109.31040 * 178.61753 * 10 8 7 12 12 N 1.46920 * 108.77435 * 54.63686 * 11 10 8 13 13 C 1.34778 * 120.63229 * 126.37018 * 12 11 10 14 14 O 1.21280 * 120.00314 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.99794 * 0.02562 * 13 12 11 16 16 S 1.81001 * 109.47024 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99850 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00237 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99778 * 179.97438 * 17 16 15 20 20 N 1.31635 * 120.00140 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00045 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46930 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47276 * 119.99679 * 21 19 17 24 24 H 1.48498 * 109.47031 * 240.00118 * 21 19 17 25 25 C 1.46926 * 118.73951 * 306.38547 * 12 11 10 26 26 H 1.08998 * 109.58585 * 173.54130 * 25 12 11 27 27 C 1.52998 * 109.58914 * 293.82646 * 25 12 11 28 28 C 1.53040 * 109.45496 * 154.93147 * 8 7 6 29 29 H 1.09003 * 109.47167 * 300.00177 * 1 2 3 30 30 H 1.08992 * 109.47205 * 59.99829 * 1 2 3 31 31 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46664 * 239.99784 * 2 1 3 33 33 H 1.09000 * 109.47045 * 119.99936 * 2 1 3 34 34 H 1.08996 * 109.46922 * 60.00460 * 4 3 2 35 35 H 1.08996 * 109.47048 * 299.99735 * 4 3 2 36 36 H 1.08996 * 109.47546 * 59.99628 * 5 4 3 37 37 H 1.09008 * 109.46740 * 299.99777 * 5 4 3 38 38 H 1.08996 * 109.46886 * 60.00279 * 6 5 4 39 39 H 1.08996 * 109.46929 * 299.99649 * 6 5 4 40 40 H 1.00903 * 110.99736 * 56.04593 * 7 6 5 41 41 H 1.08999 * 109.50017 * 58.66161 * 10 8 7 42 42 H 1.09004 * 109.49998 * 298.56758 * 10 8 7 43 43 H 1.08998 * 109.58545 * 174.42116 * 11 10 8 44 44 H 1.08995 * 109.58642 * 294.70603 * 11 10 8 45 45 H 1.09001 * 109.47247 * 299.99486 * 15 13 12 46 46 H 1.08995 * 109.47466 * 59.99868 * 15 13 12 47 47 H 0.96998 * 119.99936 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.47071 * 59.99742 * 27 25 12 49 49 H 1.09006 * 109.47129 * 179.97438 * 27 25 12 50 50 H 1.09000 * 109.47206 * 300.00012 * 27 25 12 51 51 H 1.09003 * 109.49938 * 61.44028 * 28 8 7 52 52 H 1.08991 * 109.53248 * 301.35326 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3507 3.0590 -0.0012 7 7 5.7295 4.4784 -0.0011 8 6 7.1903 4.6333 -0.0017 9 1 7.6398 3.8342 -0.5911 10 6 7.7112 4.5618 1.4355 11 6 9.2378 4.6891 1.4280 12 7 9.6063 5.9186 0.7132 13 6 10.4079 6.8351 1.2912 14 8 10.7051 7.8458 0.6905 15 6 10.9357 6.6033 2.6835 16 16 11.9733 8.0022 3.1761 17 6 12.4410 7.4817 4.7933 18 1 12.0834 6.5397 5.1819 19 6 13.2691 8.2825 5.5676 20 7 13.7054 9.4305 5.0937 21 14 13.7644 7.7311 7.2822 22 1 13.1450 6.4140 7.5769 23 1 15.2427 7.6110 7.3559 24 1 13.2988 8.7303 8.2773 25 6 9.0840 6.1304 -0.6437 26 1 9.3523 7.1296 -0.9867 27 6 9.6785 5.0862 -1.5909 28 6 7.5591 5.9870 -0.6131 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8332 0.9766 -0.8908 35 1 3.8340 0.9763 0.8891 36 1 3.4231 3.4214 0.8905 37 1 3.4223 3.4223 -0.8895 38 1 5.7526 2.5761 -0.8918 39 1 5.7542 2.5749 0.8881 40 1 5.3150 4.9632 0.7808 41 1 7.4279 3.6068 1.8781 42 1 7.2811 5.3757 2.0193 43 1 9.6054 4.7383 2.4530 44 1 9.6739 3.8265 0.9244 45 1 10.1006 6.5087 3.3777 46 1 11.5274 5.6880 2.7002 47 1 14.2844 9.9899 5.6347 48 1 9.4049 4.0880 -1.2491 49 1 9.2894 5.2448 -2.5968 50 1 10.7642 5.1817 -1.6016 51 1 7.1305 6.7875 -0.0100 52 1 7.1676 6.0470 -1.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671212309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:30 Heat of formation + Delta-G solvation = -98.273093 kcal Electronic energy + Delta-G solvation = -27617.906081 eV Core-core repulsion = 23742.979200 eV Total energy + Delta-G solvation = -3874.926880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30695 -38.67423 -37.98893 -36.01192 -33.41149 -32.83777 -32.43469 -31.51770 -29.90657 -28.76118 -27.67848 -25.50166 -24.99812 -23.51086 -23.24739 -22.49169 -21.84281 -20.74786 -18.55012 -17.75259 -17.15524 -16.90643 -16.82661 -15.81384 -15.64138 -15.54810 -15.13218 -14.86238 -14.81047 -14.65916 -14.23448 -14.06216 -13.94945 -13.53366 -13.22363 -13.07323 -13.01846 -12.98820 -12.54016 -12.35040 -12.21814 -12.13763 -11.99475 -11.89016 -11.78457 -11.54429 -11.42146 -11.33556 -11.16853 -11.07943 -11.02649 -10.95371 -10.76002 -10.38375 -10.05725 -9.79881 -9.32289 -9.08096 -8.74746 -8.49623 -8.21974 -6.50344 -6.22337 -3.92775 2.92685 3.04453 3.10860 3.20613 3.25266 3.30120 3.59120 3.87468 4.19352 4.43373 4.49267 4.56473 4.57103 4.62930 4.75278 4.84632 4.84970 4.86121 4.89078 4.98909 5.04274 5.04866 5.07791 5.12872 5.19057 5.24723 5.28982 5.31426 5.39088 5.41736 5.48170 5.55272 5.61992 5.63914 5.67678 5.71493 5.76453 5.81521 5.86859 5.88989 5.93277 6.06638 6.10901 6.22815 6.68305 6.72258 6.76904 7.03474 7.58182 7.60029 8.34581 8.58599 9.23048 10.85138 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.001762 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.116724 B =15887.078205 C =17325.331761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.117 4.117 6 C 0.062 3.938 7 N -0.684 5.684 8 C 0.089 3.911 9 H 0.081 0.919 10 C -0.165 4.165 11 C 0.112 3.888 12 N -0.615 5.615 13 C 0.536 3.464 14 O -0.517 6.517 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.137 3.863 26 H 0.103 0.897 27 C -0.160 4.160 28 C -0.114 4.114 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.343 0.657 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.268 0.732 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.569 -19.989 -12.029 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.013 4.013 5 C -0.155 4.155 6 C -0.067 4.067 7 N -0.314 5.314 8 C -0.021 4.021 9 H 0.099 0.901 10 C -0.205 4.205 11 C -0.012 4.012 12 N -0.351 5.351 13 C 0.324 3.676 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.033 3.967 26 H 0.121 0.879 27 C -0.218 4.218 28 C -0.152 4.152 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.161 0.839 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.086 0.914 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.206 -18.095 -13.577 31.007 hybrid contribution 0.356 -2.182 2.859 3.614 sum -20.850 -20.276 -10.718 30.996 Atomic orbital electron populations 1.21749 0.93670 1.02287 1.03233 1.22460 0.95692 0.83759 1.00046 1.87885 1.21177 1.26482 1.95438 1.22423 0.81246 0.97478 1.00129 1.21464 0.95201 0.94787 1.04060 1.21845 0.94538 0.89623 1.00727 1.60569 1.09116 1.11459 1.50236 1.21610 0.86939 0.98655 0.94890 0.90056 1.22666 0.96877 1.02479 0.98458 1.21576 0.94205 0.87200 0.98212 1.48184 1.50277 1.20777 1.15877 1.20312 0.77309 0.82307 0.87702 1.90688 1.57010 1.26940 1.64441 1.23554 1.04102 1.07144 0.95290 1.85415 1.58514 1.21387 1.18115 1.22898 1.35692 1.08838 1.00875 0.90949 1.24987 0.95161 0.94555 0.98843 1.70030 1.32278 1.10701 1.37223 0.86126 0.78372 0.78655 0.82393 1.19654 1.20553 1.20560 1.21124 0.92368 1.01087 0.82105 0.87940 1.22145 1.01635 0.98991 0.99070 1.21880 0.94599 0.96692 1.02076 0.91805 0.91791 0.91078 0.93421 0.93442 0.93258 0.93447 0.91168 0.90145 0.90883 0.95002 0.83860 0.91110 0.90939 0.89236 0.91579 0.89404 0.89380 0.92234 0.92563 0.91564 0.92152 0.91383 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.34 6.66 37.16 0.25 0.59 16 3 O -0.39 -3.29 10.34 -35.23 -0.36 -3.66 16 4 C 0.06 0.42 5.94 37.16 0.22 0.64 16 5 C -0.12 -0.79 5.84 -26.73 -0.16 -0.94 16 6 C 0.06 0.40 5.48 -3.82 -0.02 0.38 16 7 N -0.68 -5.27 6.25 -106.68 -0.67 -5.93 16 8 C 0.09 0.74 2.22 -67.67 -0.15 0.59 16 9 H 0.08 0.66 6.15 -51.93 -0.32 0.34 16 10 C -0.16 -1.44 5.33 -26.61 -0.14 -1.58 16 11 C 0.11 1.20 5.92 -3.71 -0.02 1.18 16 12 N -0.61 -8.60 2.68 -165.22 -0.44 -9.05 16 13 C 0.54 10.21 7.72 -10.99 -0.08 10.13 16 14 O -0.52 -11.86 15.27 5.56 0.08 -11.78 16 15 C -0.15 -3.06 4.50 36.00 0.16 -2.90 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 21 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.14 1.66 3.21 -67.60 -0.22 1.45 16 26 H 0.10 1.49 7.00 -51.93 -0.36 1.12 16 27 C -0.16 -1.60 9.03 37.16 0.34 -1.27 16 28 C -0.11 -1.13 5.16 -26.61 -0.14 -1.27 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 39 H 0.03 0.20 7.41 -51.93 -0.39 -0.19 16 40 H 0.34 2.59 8.48 -39.29 -0.33 2.26 16 41 H 0.07 0.52 7.43 -51.93 -0.39 0.14 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.00 5.93 -51.93 -0.31 0.70 16 44 H 0.07 0.61 7.51 -51.93 -0.39 0.22 16 45 H 0.09 1.66 7.69 -51.91 -0.40 1.26 16 46 H 0.09 1.66 7.94 -51.92 -0.41 1.25 16 47 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.06 0.49 5.73 -51.93 -0.30 0.19 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 420.93 15.07 6.34 6.34 Total: -1.00 -33.99 420.93 -10.41 -44.40 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -9.48 Total: -1.07 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 0.62 Total: -6.30 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.38 Total: -40.41 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.28 Total: -15.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.99 -10.41 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671212309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.875 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds