Wall clock time and date at job start Wed Apr 1 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46854 * 2 1 4 4 C 1.42901 * 113.99578 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46828 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.46885 * 65.00169 * 5 4 3 7 7 C 1.46903 * 111.00046 * 175.28158 * 6 5 4 8 8 H 1.08996 * 109.47339 * 327.81501 * 7 6 5 9 9 C 1.53005 * 109.46742 * 87.80761 * 7 6 5 10 10 C 1.52991 * 109.47484 * 207.80842 * 7 6 5 11 11 H 1.09005 * 109.58503 * 53.62704 * 10 7 6 12 12 C 1.53189 * 109.59035 * 293.34483 * 10 7 6 13 13 C 1.53043 * 109.31694 * 185.57405 * 12 10 7 14 14 C 1.53045 * 109.53482 * 61.36472 * 13 12 10 15 15 C 1.53188 * 109.31253 * 298.63597 * 14 13 12 16 16 N 1.46927 * 109.58779 * 174.05651 * 10 7 6 17 17 C 1.34773 * 120.63140 * 353.39338 * 16 10 7 18 18 O 1.21285 * 119.99902 * 3.64980 * 17 16 10 19 19 C 1.50700 * 120.00407 * 183.64564 * 17 16 10 20 20 S 1.80991 * 109.47315 * 180.02562 * 19 17 16 21 21 C 1.76203 * 100.00241 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99506 * 359.97438 * 21 20 19 23 23 C 1.38792 * 120.00341 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99768 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00201 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47039 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46871 * 119.99793 * 25 23 21 28 28 H 1.48497 * 109.47293 * 239.99917 * 25 23 21 29 29 H 1.09001 * 109.47028 * 60.00480 * 1 2 3 30 30 H 1.08993 * 109.47330 * 299.99998 * 1 2 3 31 31 H 1.09000 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46821 * 120.00010 * 2 1 3 33 33 H 1.08999 * 109.46958 * 239.99815 * 2 1 3 34 34 H 1.09005 * 109.47279 * 299.99744 * 4 3 2 35 35 H 1.09003 * 109.47626 * 60.00232 * 4 3 2 36 36 H 1.09002 * 109.46430 * 184.99731 * 5 4 3 37 37 H 1.08998 * 109.47151 * 304.99697 * 5 4 3 38 38 H 1.00898 * 111.00245 * 51.33159 * 6 5 4 39 39 H 1.08993 * 109.47516 * 286.70198 * 9 7 6 40 40 H 1.09004 * 109.47203 * 46.70429 * 9 7 6 41 41 H 1.09007 * 109.47020 * 166.69586 * 9 7 6 42 42 H 1.09002 * 109.49882 * 305.53105 * 12 10 7 43 43 H 1.09002 * 109.49788 * 65.59124 * 12 10 7 44 44 H 1.09001 * 109.46315 * 181.38582 * 13 12 10 45 45 H 1.09000 * 109.45853 * 301.35904 * 13 12 10 46 46 H 1.09002 * 109.49329 * 58.58574 * 14 13 12 47 47 H 1.08996 * 109.49761 * 178.68317 * 14 13 12 48 48 H 1.09003 * 109.58200 * 174.42150 * 15 14 13 49 49 H 1.08992 * 109.58706 * 294.70533 * 15 14 13 50 50 H 1.08996 * 109.47452 * 300.00763 * 19 17 16 51 51 H 1.09005 * 109.46599 * 60.00340 * 19 17 16 52 52 H 0.97007 * 119.99303 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 7 3.3855 3.5631 1.2545 7 6 3.8451 4.9559 1.3386 8 1 4.8027 5.0540 0.8272 9 6 2.8162 5.8733 0.6747 10 6 4.0084 5.3513 2.8074 11 1 4.6537 4.6309 3.3102 12 6 2.6365 5.3748 3.4886 13 6 2.7892 5.9042 4.9164 14 6 3.3333 7.3342 4.8766 15 6 4.7131 7.3329 4.2112 16 7 4.6020 6.6926 2.8934 17 6 5.0365 7.3235 1.7846 18 8 4.8795 6.8132 0.6956 19 6 5.7174 8.6632 1.8977 20 16 6.1795 9.2464 0.2478 21 6 6.9333 10.7831 0.6664 22 1 6.9920 11.0920 1.6998 23 6 7.4506 11.5971 -0.3316 24 7 7.3776 11.2213 -1.5911 25 14 8.2490 13.2265 0.1121 26 1 8.2042 13.4149 1.5845 27 1 9.6624 13.2253 -0.3434 28 1 7.5159 14.3341 -0.5518 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.8333 0.9767 0.8909 35 1 3.8341 0.9764 -0.8892 36 1 4.9083 3.0253 -0.0892 37 1 3.3500 3.4409 -0.8425 38 1 3.6979 3.0306 2.0526 39 1 2.8688 5.7553 -0.4075 40 1 1.8169 5.6090 1.0208 41 1 3.0297 6.9093 0.9381 42 1 1.9637 6.0251 2.9294 43 1 2.2268 4.3651 3.5164 44 1 1.8182 5.8988 5.4116 45 1 3.4814 5.2678 5.4676 46 1 2.6540 7.9660 4.3043 47 1 3.4197 7.7190 5.8927 48 1 5.0616 8.3586 4.0908 49 1 5.4172 6.7781 4.8312 50 1 5.0367 9.3790 2.3584 51 1 6.6122 8.5651 2.5126 52 1 7.7388 11.7904 -2.2887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689896452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:13 Heat of formation + Delta-G solvation = -59.480559 kcal Electronic energy + Delta-G solvation = -29180.274565 eV Core-core repulsion = 25307.029855 eV Total energy + Delta-G solvation = -3873.244710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72178 -38.30710 -37.21543 -36.29572 -33.04765 -32.62804 -32.42703 -31.14866 -29.11850 -28.95748 -27.35189 -25.55646 -25.01652 -23.83352 -22.95991 -22.09261 -21.01905 -20.51664 -18.69483 -17.61099 -17.07505 -16.78738 -16.26632 -15.79898 -15.62650 -15.15537 -14.84243 -14.80612 -14.46433 -14.32098 -14.03231 -14.02132 -13.70552 -13.51961 -13.29993 -12.99160 -12.75503 -12.54042 -12.45760 -12.38577 -12.24276 -11.91646 -11.62111 -11.53442 -11.32610 -11.11083 -11.07924 -11.01696 -10.97091 -10.79599 -10.75556 -10.66249 -10.42797 -10.26628 -9.79116 -9.71864 -9.07831 -8.95089 -8.40198 -8.22300 -7.98022 -6.49742 -6.22464 -3.92416 2.91913 3.04374 3.20758 3.25255 3.30277 3.55248 3.58117 4.19740 4.26856 4.61195 4.72528 4.77442 4.81394 4.86068 4.94485 5.04942 5.08763 5.11131 5.12945 5.14832 5.18174 5.21700 5.28814 5.38996 5.39339 5.53745 5.57953 5.63914 5.68307 5.69036 5.82060 5.85794 5.86740 5.88190 5.93538 5.94217 6.01210 6.08151 6.10104 6.13618 6.32032 6.39780 6.47732 6.73903 6.87216 7.08531 7.25679 7.50550 7.59016 7.61985 8.34772 8.60665 9.23247 10.84924 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.002538 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.872428 B =11030.120707 C =12617.186919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.371 6.371 4 C 0.066 3.934 5 C 0.065 3.935 6 N -0.681 5.681 7 C 0.082 3.918 8 H 0.088 0.912 9 C -0.109 4.109 10 C 0.150 3.850 11 H 0.061 0.939 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.136 4.136 15 C 0.109 3.891 16 N -0.612 5.612 17 C 0.526 3.474 18 O -0.499 6.499 19 C -0.151 4.151 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.328 0.672 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 -19.276 11.837 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.290 6.290 4 C -0.011 4.011 5 C -0.065 4.065 6 N -0.314 5.314 7 C -0.026 4.026 8 H 0.106 0.894 9 C -0.166 4.166 10 C 0.046 3.954 11 H 0.079 0.921 12 C -0.165 4.165 13 C -0.157 4.157 14 C -0.174 4.174 15 C -0.014 4.014 16 N -0.349 5.349 17 C 0.315 3.685 18 O -0.373 6.373 19 C -0.302 4.302 20 S 0.167 5.833 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.107 0.893 49 H 0.083 0.917 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.893 -19.633 9.774 24.487 hybrid contribution 1.885 1.268 1.859 2.936 sum -9.008 -18.364 11.633 23.531 Atomic orbital electron populations 1.21715 0.93876 1.01840 1.03286 1.22423 0.95656 0.84570 0.99504 1.88049 1.20550 1.25151 1.95211 1.22550 0.81971 0.96984 0.99586 1.21971 0.97561 0.92462 0.94466 1.60586 1.64514 1.03005 1.03310 1.22306 1.00058 0.86864 0.93329 0.89448 1.21807 0.96077 0.98780 0.99977 1.21356 0.93789 0.83495 0.96738 0.92100 1.21983 0.96977 1.02383 0.95186 1.21540 1.00941 0.96085 0.97177 1.21926 0.97015 0.97653 1.00817 1.21701 0.97085 0.99028 0.83594 1.48053 1.62391 1.17314 1.07128 1.20212 0.78225 0.86527 0.83525 1.90738 1.54188 1.65172 1.27215 1.23595 1.02339 0.96184 1.08079 1.85341 1.75460 1.22858 0.99670 1.22899 1.44130 1.05297 0.95897 0.90967 1.24988 0.95620 0.98535 0.94469 1.70031 1.43487 1.37394 0.99353 0.86131 0.78867 0.81986 0.78600 1.19627 1.20595 1.20562 0.91885 0.91762 0.91488 0.93850 0.93919 0.93795 0.93190 0.93732 0.89924 0.85463 0.93469 0.94272 0.91766 0.90762 0.90434 0.91894 0.92208 0.91283 0.90957 0.89264 0.91714 0.89511 0.89532 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.37 -4.30 10.29 -35.23 -0.36 -4.66 16 4 C 0.07 0.65 6.17 37.16 0.23 0.88 16 5 C 0.06 0.76 5.94 -3.82 -0.02 0.74 16 6 N -0.68 -8.26 5.94 -106.73 -0.63 -8.90 16 7 C 0.08 1.18 1.87 -67.71 -0.13 1.05 16 8 H 0.09 1.52 5.44 -52.37 -0.28 1.23 16 9 C -0.11 -1.78 6.95 37.16 0.26 -1.52 16 10 C 0.15 1.86 2.57 -67.61 -0.17 1.68 16 11 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 12 C -0.13 -1.36 4.88 -26.61 -0.13 -1.49 16 13 C -0.12 -1.07 5.88 -26.69 -0.16 -1.22 16 14 C -0.14 -1.27 6.08 -26.61 -0.16 -1.44 16 15 C 0.11 1.20 6.33 -3.71 -0.02 1.18 16 16 N -0.61 -8.51 2.88 -165.23 -0.48 -8.99 16 17 C 0.53 9.53 6.51 -10.99 -0.07 9.46 16 18 O -0.50 -10.27 9.34 5.55 0.05 -10.21 16 19 C -0.15 -3.02 4.53 36.01 0.16 -2.85 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 22 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.04 0.38 8.12 -51.93 -0.42 -0.05 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 0.52 7.94 -51.93 -0.41 0.11 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.33 3.44 8.15 -39.29 -0.32 3.12 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.60 7.06 -51.93 -0.37 0.23 16 41 H 0.06 1.18 5.33 -51.93 -0.28 0.90 16 42 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 43 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 1.02 5.95 -51.93 -0.31 0.71 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.63 7.54 -51.92 -0.39 1.24 16 51 H 0.09 1.63 8.07 -51.91 -0.42 1.21 16 52 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 410.63 15.07 6.19 6.19 Total: -1.00 -32.53 410.63 -10.52 -43.05 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -9.40 Total: 2.69 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 0.61 Total: -6.39 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.38 Total: -43.20 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.31 Total: -14.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.53 -10.52 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689896452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.432 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds