Wall clock time and date at job start Wed Apr 1 2020 03:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46854 * 2 1 4 4 C 1.42901 * 113.99578 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46828 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.46885 * 65.00169 * 5 4 3 7 7 C 1.46903 * 111.00046 * 175.28158 * 6 5 4 8 8 H 1.08996 * 109.47339 * 327.81501 * 7 6 5 9 9 C 1.53005 * 109.46742 * 87.80761 * 7 6 5 10 10 C 1.52991 * 109.47484 * 207.80842 * 7 6 5 11 11 H 1.09005 * 109.58503 * 53.62704 * 10 7 6 12 12 C 1.53189 * 109.59035 * 293.34483 * 10 7 6 13 13 C 1.53043 * 109.31694 * 185.57405 * 12 10 7 14 14 C 1.53045 * 109.53482 * 61.36472 * 13 12 10 15 15 C 1.53188 * 109.31253 * 298.63597 * 14 13 12 16 16 N 1.46927 * 109.58779 * 174.05651 * 10 7 6 17 17 C 1.34773 * 120.63140 * 353.39338 * 16 10 7 18 18 O 1.21285 * 119.99902 * 3.64980 * 17 16 10 19 19 C 1.50700 * 120.00407 * 183.64564 * 17 16 10 20 20 S 1.80991 * 109.47315 * 180.02562 * 19 17 16 21 21 C 1.76203 * 100.00241 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99506 * 359.97438 * 21 20 19 23 23 C 1.38792 * 120.00341 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99768 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00201 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47039 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46871 * 119.99793 * 25 23 21 28 28 H 1.48497 * 109.47293 * 239.99917 * 25 23 21 29 29 H 1.09001 * 109.47028 * 60.00480 * 1 2 3 30 30 H 1.08993 * 109.47330 * 299.99998 * 1 2 3 31 31 H 1.09000 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46821 * 120.00010 * 2 1 3 33 33 H 1.08999 * 109.46958 * 239.99815 * 2 1 3 34 34 H 1.09005 * 109.47279 * 299.99744 * 4 3 2 35 35 H 1.09003 * 109.47626 * 60.00232 * 4 3 2 36 36 H 1.09002 * 109.46430 * 184.99731 * 5 4 3 37 37 H 1.08998 * 109.47151 * 304.99697 * 5 4 3 38 38 H 1.00898 * 111.00245 * 51.33159 * 6 5 4 39 39 H 1.08993 * 109.47516 * 286.70198 * 9 7 6 40 40 H 1.09004 * 109.47203 * 46.70429 * 9 7 6 41 41 H 1.09007 * 109.47020 * 166.69586 * 9 7 6 42 42 H 1.09002 * 109.49882 * 305.53105 * 12 10 7 43 43 H 1.09002 * 109.49788 * 65.59124 * 12 10 7 44 44 H 1.09001 * 109.46315 * 181.38582 * 13 12 10 45 45 H 1.09000 * 109.45853 * 301.35904 * 13 12 10 46 46 H 1.09002 * 109.49329 * 58.58574 * 14 13 12 47 47 H 1.08996 * 109.49761 * 178.68317 * 14 13 12 48 48 H 1.09003 * 109.58200 * 174.42150 * 15 14 13 49 49 H 1.08992 * 109.58706 * 294.70533 * 15 14 13 50 50 H 1.08996 * 109.47452 * 300.00763 * 19 17 16 51 51 H 1.09005 * 109.46599 * 60.00340 * 19 17 16 52 52 H 0.97007 * 119.99303 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 7 3.3855 3.5631 1.2545 7 6 3.8451 4.9559 1.3386 8 1 4.8027 5.0540 0.8272 9 6 2.8162 5.8733 0.6747 10 6 4.0084 5.3513 2.8074 11 1 4.6537 4.6309 3.3102 12 6 2.6365 5.3748 3.4886 13 6 2.7892 5.9042 4.9164 14 6 3.3333 7.3342 4.8766 15 6 4.7131 7.3329 4.2112 16 7 4.6020 6.6926 2.8934 17 6 5.0365 7.3235 1.7846 18 8 4.8795 6.8132 0.6956 19 6 5.7174 8.6632 1.8977 20 16 6.1795 9.2464 0.2478 21 6 6.9333 10.7831 0.6664 22 1 6.9920 11.0920 1.6998 23 6 7.4506 11.5971 -0.3316 24 7 7.3776 11.2213 -1.5911 25 14 8.2490 13.2265 0.1121 26 1 8.2042 13.4149 1.5845 27 1 9.6624 13.2253 -0.3434 28 1 7.5159 14.3341 -0.5518 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.8333 0.9767 0.8909 35 1 3.8341 0.9764 -0.8892 36 1 4.9083 3.0253 -0.0892 37 1 3.3500 3.4409 -0.8425 38 1 3.6979 3.0306 2.0526 39 1 2.8688 5.7553 -0.4075 40 1 1.8169 5.6090 1.0208 41 1 3.0297 6.9093 0.9381 42 1 1.9637 6.0251 2.9294 43 1 2.2268 4.3651 3.5164 44 1 1.8182 5.8988 5.4116 45 1 3.4814 5.2678 5.4676 46 1 2.6540 7.9660 4.3043 47 1 3.4197 7.7190 5.8927 48 1 5.0616 8.3586 4.0908 49 1 5.4172 6.7781 4.8312 50 1 5.0367 9.3790 2.3584 51 1 6.6122 8.5651 2.5126 52 1 7.7388 11.7904 -2.2887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689896452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:12 Heat of formation + Delta-G solvation = -80.985005 kcal Electronic energy + Delta-G solvation = -29181.207068 eV Core-core repulsion = 25307.029855 eV Total energy + Delta-G solvation = -3874.177213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94123 -39.14587 -38.39461 -37.30738 -34.59518 -34.11000 -33.56440 -31.91057 -30.46358 -30.09249 -28.43197 -27.69181 -26.09811 -24.79682 -23.59985 -23.05521 -21.96398 -21.71301 -20.14580 -19.29812 -18.22746 -17.71405 -17.19239 -16.93917 -16.89605 -16.84243 -16.19483 -15.91348 -15.88814 -15.33297 -15.07634 -15.00577 -14.85748 -14.50796 -14.47391 -14.19204 -14.12042 -13.89964 -13.55087 -13.35380 -13.15993 -13.13049 -12.94383 -12.89854 -12.60683 -12.58315 -12.30002 -12.11651 -11.98599 -11.91724 -11.71977 -11.68245 -11.65252 -11.51778 -11.30334 -11.16305 -10.46333 -10.26649 -10.24459 -9.54754 -9.12095 -8.65655 -8.35704 -6.12667 1.26067 1.39762 1.45504 1.56353 1.62776 2.09382 2.26924 2.82264 2.98437 3.16958 3.31954 3.61413 3.83467 3.90524 4.01423 4.08453 4.10995 4.18326 4.23415 4.26503 4.27280 4.30466 4.41726 4.46564 4.51772 4.53837 4.55308 4.59004 4.66817 4.74436 4.80996 4.89933 4.94038 4.98362 4.99638 5.05074 5.08424 5.13304 5.19593 5.26295 5.28683 5.30666 5.40931 5.42716 5.55043 5.69008 6.09259 6.18903 6.36988 6.39294 6.59178 7.05893 7.24605 8.73541 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.002538 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.872428 B =11030.120707 C =12617.186919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.400 6.400 4 C 0.072 3.928 5 C 0.065 3.935 6 N -0.675 5.675 7 C 0.093 3.907 8 H 0.055 0.945 9 C -0.095 4.095 10 C 0.151 3.849 11 H 0.085 0.915 12 C -0.120 4.120 13 C -0.114 4.114 14 C -0.132 4.132 15 C 0.100 3.900 16 N -0.601 5.601 17 C 0.523 3.477 18 O -0.533 6.533 19 C -0.124 4.124 20 S -0.146 6.146 21 C -0.545 4.545 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.343 0.657 39 H 0.018 0.982 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.101 0.899 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 -20.267 15.377 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.319 6.319 4 C -0.005 4.005 5 C -0.065 4.065 6 N -0.309 5.309 7 C -0.016 4.016 8 H 0.072 0.928 9 C -0.152 4.152 10 C 0.047 3.953 11 H 0.103 0.897 12 C -0.158 4.158 13 C -0.152 4.152 14 C -0.170 4.170 15 C -0.022 4.022 16 N -0.336 5.336 17 C 0.311 3.689 18 O -0.410 6.410 19 C -0.276 4.276 20 S 0.082 5.918 21 C -0.693 4.693 22 H 0.099 0.901 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.200 1.200 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.162 0.838 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.117 0.883 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.117 0.883 51 H 0.119 0.881 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.930 -20.655 13.369 26.923 hybrid contribution 1.814 1.465 0.799 2.465 sum -9.116 -19.190 14.168 25.536 Atomic orbital electron populations 1.21740 0.93435 1.03062 1.02368 1.22616 0.96086 0.83375 1.00606 1.88008 1.21274 1.27202 1.95464 1.22513 0.81633 0.95272 1.01107 1.21932 0.97280 0.93856 0.93391 1.60479 1.64309 1.02081 1.04071 1.21954 0.97507 0.87747 0.94385 0.92780 1.21633 0.97183 0.98074 0.98355 1.21493 0.95377 0.82864 0.95524 0.89708 1.21915 0.95019 1.02692 0.96178 1.21529 1.02233 0.95702 0.95709 1.21916 0.95321 0.98016 1.01711 1.22023 0.99013 0.98939 0.82213 1.48051 1.60848 1.17650 1.07090 1.19952 0.78655 0.86048 0.84282 1.90765 1.55711 1.65712 1.28812 1.23408 1.03349 0.97572 1.03237 1.85497 1.76107 1.23812 1.06413 1.23226 1.44106 1.05527 0.96408 0.90148 1.26114 0.96082 1.02788 0.94205 1.70193 1.44704 1.39166 1.00692 0.84926 0.77679 0.76436 0.79048 1.18015 1.19908 1.19968 0.92962 0.92488 0.89207 0.92446 0.93001 0.91798 0.92005 0.93772 0.92676 0.83813 0.96244 0.93571 0.94067 0.92955 0.89349 0.90503 0.90348 0.92961 0.88313 0.89796 0.89130 0.88298 0.88066 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.40 -8.95 10.29 -148.98 -1.53 -10.48 16 4 C 0.07 1.34 6.17 71.98 0.44 1.79 16 5 C 0.06 1.57 5.94 86.31 0.51 2.08 16 6 N -0.67 -16.14 5.94 -491.58 -2.92 -19.06 16 7 C 0.09 2.70 1.87 44.91 0.08 2.79 16 8 H 0.05 1.98 5.44 -9.29 -0.05 1.93 16 9 C -0.09 -3.29 6.95 71.98 0.50 -2.79 16 10 C 0.15 3.49 2.57 44.97 0.12 3.61 16 11 H 0.09 1.65 8.00 -2.38 -0.02 1.63 16 12 C -0.12 -2.30 4.88 30.67 0.15 -2.15 16 13 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 14 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 15 C 0.10 1.93 6.33 86.36 0.55 2.48 16 16 N -0.60 -16.06 2.88 -795.04 -2.29 -18.35 16 17 C 0.52 19.30 6.51 87.66 0.57 19.87 16 18 O -0.53 -23.21 9.34 -3.04 -0.03 -23.24 16 19 C -0.12 -5.02 4.53 71.24 0.32 -4.70 16 20 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 21 C -0.54 -31.30 9.50 67.95 0.65 -30.65 16 22 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 25 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.95 8.12 -2.38 -0.02 0.93 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.04 1.06 7.94 -2.39 -0.02 1.05 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.34 6.51 8.15 -89.70 -0.73 5.78 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 1.48 7.06 -2.38 -0.02 1.46 16 41 H 0.04 1.60 5.33 -2.38 -0.01 1.59 16 42 H 0.05 1.25 6.33 -2.39 -0.02 1.24 16 43 H 0.09 1.54 7.97 -2.39 -0.02 1.53 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.72 5.95 -2.39 -0.01 1.71 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.10 3.71 7.54 -2.40 -0.02 3.69 16 51 H 0.10 3.75 8.07 -2.39 -0.02 3.73 16 52 H 0.27 15.49 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -75.02 410.63 0.44 -74.57 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.12 Total: 25.74 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.95 Total: -9.84 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -4.93 Total: -93.41 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.56 Total: -33.72 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -75.02 0.44 -74.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689896452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.413 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds