Wall clock time and date at job start Wed Apr 1 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47246 * 2 1 4 4 C 1.46905 * 110.99651 * 61.19639 * 3 2 1 5 5 C 1.53000 * 109.46862 * 66.04355 * 4 3 2 6 6 N 1.46503 * 109.46571 * 180.02562 * 5 4 3 7 7 C 1.34782 * 119.99742 * 179.72625 * 6 5 4 8 8 O 1.21287 * 120.00158 * 0.27769 * 7 6 5 9 9 C 1.50697 * 119.99972 * 180.27363 * 7 6 5 10 10 S 1.81006 * 109.47087 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99927 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00115 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99742 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99917 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99902 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46743 * 59.99988 * 15 13 11 17 17 H 1.48496 * 109.47102 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47170 * 300.00191 * 15 13 11 19 19 C 1.46899 * 111.00251 * 297.24287 * 3 2 1 20 20 C 1.52998 * 109.47079 * 288.27384 * 19 3 2 21 21 H 1.09001 * 109.86949 * 57.37441 * 20 19 3 22 22 C 1.54103 * 109.87562 * 178.37711 * 20 19 3 23 23 C 1.54815 * 104.18275 * 121.45652 * 22 20 19 24 24 C 1.53004 * 110.90479 * 139.08072 * 23 22 20 25 25 C 1.52998 * 110.90476 * 262.64527 * 23 22 20 26 26 C 1.54988 * 102.09472 * 20.87723 * 23 22 20 27 27 O 1.43743 * 109.87889 * 296.21064 * 20 19 3 28 28 H 1.09001 * 109.47099 * 61.17942 * 1 2 3 29 29 H 1.08997 * 109.47045 * 181.18397 * 1 2 3 30 30 H 1.09003 * 109.47050 * 301.18556 * 1 2 3 31 31 H 1.09003 * 109.46960 * 240.00722 * 2 1 3 32 32 H 1.08998 * 109.47516 * 120.00346 * 2 1 3 33 33 H 1.09008 * 109.46881 * 306.04506 * 4 3 2 34 34 H 1.09002 * 109.46871 * 186.04581 * 4 3 2 35 35 H 1.08994 * 109.47033 * 60.00303 * 5 4 3 36 36 H 1.09002 * 109.47561 * 299.99803 * 5 4 3 37 37 H 0.96999 * 120.00744 * 359.97438 * 6 5 4 38 38 H 1.09004 * 109.47441 * 299.99845 * 9 7 6 39 39 H 1.09000 * 109.47481 * 60.00179 * 9 7 6 40 40 H 0.97000 * 119.99911 * 179.97438 * 14 13 11 41 41 H 1.09006 * 109.47173 * 48.27531 * 19 3 2 42 42 H 1.09001 * 109.46885 * 168.27378 * 19 3 2 43 43 H 1.09000 * 110.48624 * 240.12628 * 22 20 19 44 44 H 1.09000 * 110.49024 * 2.64636 * 22 20 19 45 45 H 1.08997 * 109.47208 * 59.99846 * 24 23 22 46 46 H 1.09001 * 109.46734 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.46734 * 299.99237 * 24 23 22 48 48 H 1.08998 * 109.47604 * 59.99931 * 25 23 22 49 49 H 1.09001 * 109.46806 * 180.02562 * 25 23 22 50 50 H 1.09008 * 109.47176 * 300.00047 * 25 23 22 51 51 H 1.09006 * 110.61361 * 81.47935 * 26 23 22 52 52 H 1.08996 * 110.62265 * 204.31692 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5722 2.1016 1.2018 5 6 2.2283 1.4834 2.4380 6 7 1.7815 2.1976 3.6366 7 6 2.2284 1.8213 4.8512 8 8 3.0044 0.8945 4.9515 9 6 1.7640 2.5520 6.0846 10 16 2.5357 1.8170 7.5477 11 6 1.8368 2.8338 8.8056 12 1 1.1527 3.6265 8.5411 13 6 2.1656 2.6160 10.1364 14 7 2.9991 1.6495 10.4587 15 14 1.4253 3.6944 11.4700 16 1 -0.0543 3.5715 11.4412 17 1 1.9329 3.2603 12.7962 18 1 1.8092 5.1092 11.2324 19 6 1.6034 2.0907 -1.2193 20 6 2.3962 1.5563 -2.4137 21 1 2.2468 0.4806 -2.5062 22 6 1.9379 2.2620 -3.7047 23 6 3.2260 2.9223 -4.2539 24 6 3.3100 2.7739 -5.7744 25 6 3.3006 4.3953 -3.8467 26 6 4.3369 2.0977 -3.5553 27 8 3.7937 1.8457 -2.2416 28 1 -0.3633 0.4954 -0.9004 29 1 -0.3633 -1.0274 0.0212 30 1 -0.3633 0.5322 0.8792 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.4883 2.0240 1.2885 34 1 1.8565 3.1511 1.1260 35 1 3.3120 1.5609 2.3513 36 1 1.9440 0.4338 2.5139 37 1 1.1612 2.9391 3.5565 38 1 2.0478 3.6020 6.0134 39 1 0.6800 2.4734 6.1670 40 1 3.2292 1.4976 11.3887 41 1 0.5388 1.9279 -1.3877 42 1 1.7941 3.1577 -1.1046 43 1 1.5473 1.5362 -4.4181 44 1 1.1853 3.0177 -3.4799 45 1 2.4465 3.2541 -6.2346 46 1 4.2235 3.2464 -6.1356 47 1 3.3198 1.7159 -6.0361 48 1 3.3037 4.4720 -2.7594 49 1 4.2142 4.8365 -4.2451 50 1 2.4367 4.9268 -4.2460 51 1 4.5102 1.1610 -4.0852 52 1 5.2587 2.6753 -3.4878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691007625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:41 Heat of formation + Delta-G solvation = -87.699665 kcal Electronic energy + Delta-G solvation = -27771.973623 eV Core-core repulsion = 23897.505240 eV Total energy + Delta-G solvation = -3874.468382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48612 -39.25018 -38.23036 -34.88460 -34.44939 -32.40160 -31.83486 -30.88871 -29.53333 -27.88337 -27.75595 -26.43851 -25.47156 -25.25063 -23.87965 -21.53760 -20.45066 -20.13897 -19.70712 -17.78338 -16.96978 -16.55536 -16.19278 -16.05242 -15.81591 -15.68045 -15.04956 -14.90710 -14.77579 -14.68204 -14.22599 -14.02205 -13.75298 -13.55725 -13.36421 -13.26137 -13.05411 -12.94277 -12.53150 -12.45077 -12.31909 -12.19453 -12.04299 -11.94966 -11.71343 -11.57186 -11.43453 -11.18531 -11.07976 -11.02113 -11.01653 -10.99302 -10.76022 -10.70145 -9.84562 -9.79464 -9.35541 -9.03632 -8.79780 -8.51178 -8.20227 -6.46624 -6.18689 -3.89112 2.99428 3.16753 3.25357 3.27013 3.30726 3.45859 3.61756 3.96549 4.00423 4.23234 4.24485 4.37083 4.50130 4.62880 4.72774 4.76802 4.81595 4.84775 4.97458 5.05633 5.07117 5.12818 5.14154 5.16180 5.17323 5.19971 5.24268 5.28321 5.30249 5.38849 5.43594 5.46922 5.58758 5.59309 5.65495 5.67633 5.70923 5.74555 5.85570 5.86766 5.90220 5.95750 6.08673 6.17494 6.60060 6.62531 6.81370 6.85821 7.61833 7.76636 8.37709 8.68068 9.26284 10.88673 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025014 B = 0.001596 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.101353 B =17540.678629 C =17866.208320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.041 3.959 3 N -0.522 5.522 4 C 0.042 3.958 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.054 3.946 20 C 0.085 3.915 21 H 0.066 0.934 22 C -0.144 4.144 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.136 4.136 26 C 0.051 3.949 27 O -0.349 6.349 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 2.917 -34.815 35.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.087 4.087 3 N -0.245 5.245 4 C -0.086 4.086 5 C 0.001 3.999 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.074 4.074 20 C 0.026 3.974 21 H 0.084 0.916 22 C -0.183 4.183 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.193 4.193 26 C -0.026 4.026 27 O -0.267 6.267 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.229 0.771 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.077 1.246 -34.284 34.444 hybrid contribution -2.749 2.119 0.412 3.495 sum -5.827 3.365 -33.872 34.534 Atomic orbital electron populations 1.22447 0.98336 1.02722 1.01924 1.22307 0.92719 0.90166 1.03469 1.62015 1.59412 1.02060 1.00966 1.22298 0.97880 0.98580 0.89825 1.21179 1.00139 0.96066 0.82531 1.45923 1.50291 1.37171 1.06050 1.20275 0.80425 0.83762 0.83755 1.90709 1.33568 1.28633 1.86128 1.23528 1.04827 1.03480 0.98523 1.85409 1.60192 1.44921 0.92782 1.22837 1.32545 1.20003 0.93107 0.90995 1.24987 0.94973 0.95647 0.97938 1.70010 1.32115 1.29356 1.18789 0.86229 0.79287 0.80176 0.79825 1.19972 1.20811 1.19955 1.22377 0.96644 0.99000 0.89405 1.22693 0.82823 0.98531 0.93332 0.91601 1.23111 0.98000 1.00290 0.96860 1.22126 0.95212 0.96659 0.96023 1.21760 1.02177 1.01879 0.93639 1.21766 1.01774 0.93612 1.02128 1.23652 0.96744 0.97986 0.84208 1.89055 1.20951 1.90780 1.25938 0.92636 0.91801 0.92070 0.90544 0.89825 0.93799 0.90245 0.90678 0.91703 0.77058 0.89231 0.89301 0.92143 0.92990 0.90186 0.90581 0.90337 0.92284 0.92221 0.92403 0.91799 0.92398 0.92541 0.92436 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 9.28 37.16 0.34 -1.09 16 2 C 0.04 0.36 5.70 -3.82 -0.02 0.33 16 3 N -0.52 -4.87 4.61 -234.61 -1.08 -5.96 16 4 C 0.04 0.40 4.85 -3.82 -0.02 0.38 16 5 C 0.13 1.59 5.60 -4.04 -0.02 1.57 16 6 N -0.74 -10.26 5.56 -60.29 -0.33 -10.59 16 7 C 0.53 10.27 7.85 -10.98 -0.09 10.18 16 8 O -0.52 -12.19 15.86 5.55 0.09 -12.11 16 9 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 15 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.05 0.41 4.30 -3.83 -0.02 0.39 16 20 C 0.08 0.63 3.43 -26.16 -0.09 0.54 16 21 H 0.07 0.50 6.64 -51.93 -0.34 0.16 16 22 C -0.14 -0.79 5.80 -25.20 -0.15 -0.93 16 23 C -0.10 -0.55 0.99 -152.50 -0.15 -0.70 16 24 C -0.14 -0.58 8.55 37.16 0.32 -0.26 16 25 C -0.14 -0.76 8.54 37.16 0.32 -0.44 16 26 C 0.05 0.36 6.63 38.21 0.25 0.62 16 27 O -0.35 -3.48 11.11 -35.23 -0.39 -3.87 16 28 H 0.05 0.36 6.29 -51.93 -0.33 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 6.24 -51.93 -0.32 0.17 16 31 H 0.08 0.62 6.56 -51.93 -0.34 0.28 16 32 H 0.08 0.83 6.42 -51.93 -0.33 0.49 16 33 H 0.04 0.37 6.01 -51.92 -0.31 0.06 16 34 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.89 6.53 -51.93 -0.34 0.55 16 37 H 0.40 4.20 8.47 -40.82 -0.35 3.86 16 38 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 41 H 0.05 0.33 5.90 -51.93 -0.31 0.03 16 42 H 0.08 0.62 7.81 -51.93 -0.41 0.22 16 43 H 0.08 0.35 7.86 -51.93 -0.41 -0.06 16 44 H 0.08 0.39 7.43 -51.93 -0.39 0.00 16 45 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 51 H 0.06 0.37 8.01 -51.93 -0.42 -0.05 16 52 H 0.09 0.60 8.06 -51.93 -0.42 0.19 16 LS Contribution 418.04 15.07 6.30 6.30 Total: -1.00 -35.13 418.04 -10.01 -45.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -9.18 Total: -0.43 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 1.10 Total: -5.48 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: -0.68 Total: -42.23 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.30 Total: -15.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.13 -10.01 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691007625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.568 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds