Wall clock time and date at job start Wed Apr 1 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47179 * 2 1 4 4 C 1.46900 * 110.99577 * 199.58235 * 3 2 1 5 5 C 1.52996 * 109.47507 * 66.04807 * 4 3 2 6 6 N 1.46494 * 109.47130 * 179.97438 * 5 4 3 7 7 C 1.34782 * 119.99875 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00131 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99772 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.46617 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99903 * 180.02562 * 10 9 7 12 12 H 1.08008 * 119.99527 * 0.02562 * 11 10 9 13 13 C 1.38793 * 120.00162 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00167 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47336 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47149 * 119.99865 * 15 13 11 18 18 H 1.48503 * 109.47118 * 239.99947 * 15 13 11 19 19 C 1.46896 * 110.99935 * 75.62570 * 3 2 1 20 20 C 1.52996 * 109.47293 * 199.83910 * 19 3 2 21 21 H 1.09006 * 110.41867 * 302.75429 * 20 19 3 22 22 C 1.54479 * 110.37485 * 180.44352 * 20 19 3 23 23 C 1.54503 * 104.18466 * 217.25805 * 22 20 19 24 24 C 1.53002 * 110.51497 * 118.57335 * 23 22 20 25 25 C 1.53000 * 110.51299 * 241.28634 * 23 22 20 26 26 C 1.54478 * 104.06392 * 359.93248 * 23 22 20 27 27 O 1.44419 * 104.80288 * 23.97575 * 26 23 22 28 28 H 1.08999 * 109.47396 * 294.84346 * 1 2 3 29 29 H 1.09002 * 109.47088 * 54.84139 * 1 2 3 30 30 H 1.09000 * 109.47264 * 174.83794 * 1 2 3 31 31 H 1.08998 * 109.47120 * 239.99759 * 2 1 3 32 32 H 1.09003 * 109.47078 * 120.00238 * 2 1 3 33 33 H 1.09005 * 109.46360 * 186.04842 * 4 3 2 34 34 H 1.08997 * 109.47277 * 306.04133 * 4 3 2 35 35 H 1.09006 * 109.46874 * 299.99684 * 5 4 3 36 36 H 1.08997 * 109.47403 * 59.99403 * 5 4 3 37 37 H 0.96998 * 120.00582 * 359.97438 * 6 5 4 38 38 H 1.08991 * 109.46972 * 299.99894 * 9 7 6 39 39 H 1.09001 * 109.46921 * 60.00299 * 9 7 6 40 40 H 0.96994 * 119.99967 * 180.02562 * 14 13 11 41 41 H 1.09004 * 109.47232 * 79.83906 * 19 3 2 42 42 H 1.09004 * 109.47508 * 319.84359 * 19 3 2 43 43 H 1.09000 * 110.51379 * 98.54207 * 22 20 19 44 44 H 1.09000 * 110.51231 * 335.97209 * 22 20 19 45 45 H 1.09008 * 109.46512 * 59.99806 * 24 23 22 46 46 H 1.08996 * 109.47374 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47217 * 300.00602 * 24 23 22 48 48 H 1.08996 * 109.47280 * 59.99921 * 25 23 22 49 49 H 1.09000 * 109.47260 * 180.02562 * 25 23 22 50 50 H 1.09002 * 109.47195 * 300.00067 * 25 23 22 51 51 H 1.08996 * 110.37554 * 142.81237 * 26 23 22 52 52 H 1.09001 * 110.37319 * 265.14361 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4134 1.4505 -0.4597 5 6 3.4849 1.0392 -1.9316 6 7 4.8747 1.1051 -2.3900 7 6 5.1803 0.7845 -3.6630 8 8 4.3048 0.4410 -4.4288 9 6 6.6100 0.8530 -4.1348 10 16 6.6945 0.3662 -5.8761 11 6 8.4262 0.5317 -6.1563 12 1 9.0747 0.8529 -5.3545 13 6 8.9571 0.2482 -7.4070 14 7 8.1668 -0.1438 -8.3840 15 14 10.7931 0.4230 -7.7038 16 1 11.4557 0.8757 -6.4543 17 1 11.3550 -0.8885 -8.1155 18 1 11.0281 1.4213 -8.7778 19 6 1.8742 1.9948 1.3285 20 6 1.9127 3.5186 1.1972 21 1 2.8385 3.8357 0.7170 22 6 1.7723 4.1817 2.5853 23 6 0.9087 5.4352 2.3205 24 6 -0.4002 5.3609 3.1093 25 6 1.6821 6.7051 2.6810 26 6 0.6290 5.3845 0.8021 27 8 0.7698 3.9916 0.4473 28 1 -0.3634 0.4318 0.9325 29 1 -0.3633 0.5918 -0.8402 30 1 -0.3634 -1.0235 -0.0925 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.7850 2.4692 -0.3486 34 1 4.0250 0.7736 0.1369 35 1 3.1133 0.0205 -2.0426 36 1 2.8734 1.7160 -2.5281 37 1 5.5750 1.3802 -1.7778 38 1 6.9809 1.8717 -4.0235 39 1 7.2221 0.1762 -3.5386 40 1 8.5379 -0.3422 -9.2579 41 1 2.6905 1.6648 1.9711 42 1 0.9227 1.6916 1.7653 43 1 2.7503 4.4667 2.9731 44 1 1.2679 3.5102 3.2801 45 1 -0.1792 5.3020 4.1751 46 1 -0.9952 6.2523 2.9107 47 1 -0.9584 4.4756 2.8046 48 1 2.5864 6.7640 2.0755 49 1 1.0579 7.5777 2.4885 50 1 1.9528 6.6783 3.7366 51 1 -0.3831 5.7294 0.5909 52 1 1.3573 5.9892 0.2617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691007626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:43 Heat of formation + Delta-G solvation = -91.534202 kcal Electronic energy + Delta-G solvation = -27807.248688 eV Core-core repulsion = 23932.614028 eV Total energy + Delta-G solvation = -3874.634660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36528 -39.22016 -38.03745 -34.88748 -34.47498 -32.41339 -32.02408 -31.12231 -29.51399 -27.86909 -27.73105 -26.32539 -25.49374 -25.12265 -23.08788 -21.84822 -20.81107 -20.27876 -19.67067 -17.82984 -16.87294 -16.54434 -16.14089 -15.84398 -15.70095 -15.59897 -15.10971 -14.81083 -14.78176 -14.63724 -14.32350 -14.07129 -13.81648 -13.65814 -13.57626 -13.14644 -13.08552 -12.75955 -12.54340 -12.36116 -12.25054 -12.12129 -11.99769 -11.86389 -11.71525 -11.56256 -11.38505 -11.21169 -11.10920 -11.05954 -11.00254 -10.89285 -10.74869 -10.70310 -9.89671 -9.79001 -9.37422 -9.06276 -8.81656 -8.59691 -8.20602 -6.47798 -6.20163 -3.90435 2.97183 3.14928 3.22478 3.25977 3.31510 3.46808 3.64425 3.89174 4.03982 4.21745 4.26731 4.39363 4.58297 4.59671 4.71943 4.82720 4.84622 4.88273 4.97009 5.10281 5.12345 5.14945 5.16723 5.18217 5.20854 5.24850 5.27924 5.33535 5.37293 5.38356 5.44677 5.48875 5.56548 5.63723 5.66907 5.69779 5.73898 5.78386 5.83956 5.85250 5.93549 6.00573 6.11334 6.16100 6.55917 6.63080 6.79293 6.83247 7.61304 7.74424 8.36951 8.66161 9.25179 10.87336 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.001760 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.317396 B =15905.182342 C =16893.212297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.526 5.526 4 C 0.044 3.956 5 C 0.125 3.875 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.062 3.938 20 C 0.082 3.918 21 H 0.067 0.933 22 C -0.144 4.144 23 C -0.100 4.100 24 C -0.136 4.136 25 C -0.139 4.139 26 C 0.050 3.950 27 O -0.349 6.349 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.089 0.911 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.007 9.638 28.608 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.250 5.250 4 C -0.084 4.084 5 C 0.000 4.000 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.066 4.066 20 C 0.024 3.976 21 H 0.085 0.915 22 C -0.182 4.182 23 C -0.100 4.100 24 C -0.193 4.193 25 C -0.196 4.196 26 C -0.028 4.028 27 O -0.267 6.267 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.229 0.771 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.108 0.892 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.931 9.130 26.654 32.870 hybrid contribution 3.202 0.387 1.755 3.671 sum -13.730 9.517 28.408 32.956 Atomic orbital electron populations 1.21744 0.94545 1.01398 1.02499 1.22224 0.96623 0.88258 1.01225 1.61807 1.19241 1.18419 1.25546 1.22290 0.89158 1.01613 0.95372 1.21212 0.83256 1.02072 0.93438 1.45924 1.09128 1.71752 1.12674 1.20281 0.90884 0.76091 0.80960 1.90710 1.49478 1.45091 1.53696 1.23526 0.94864 1.05186 1.06773 1.85421 1.10755 1.87753 0.99444 1.22915 0.92669 1.52915 0.99821 0.90890 1.24996 0.99061 0.94577 0.94997 1.70029 1.35137 1.42633 1.02460 0.86117 0.83060 0.77969 0.78336 1.19643 1.20577 1.20572 1.22200 1.01949 0.92682 0.89769 1.22996 0.90398 0.93866 0.90346 0.91501 1.23117 1.00534 0.96638 0.97893 1.21947 0.96201 0.95456 0.96444 1.21833 0.95788 1.02175 0.99483 1.21850 0.99858 0.96284 1.01626 1.23542 1.02027 0.84586 0.92604 1.89300 1.48027 1.22885 1.66523 0.93098 0.91390 0.92454 0.90048 0.94818 0.90221 0.94284 0.91609 0.90615 0.77054 0.89234 0.89282 0.92244 0.93295 0.89713 0.90496 0.90515 0.92556 0.92456 0.92064 0.92314 0.92279 0.92319 0.89247 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.96 37.16 0.37 -0.85 16 2 C 0.04 0.39 5.55 -3.82 -0.02 0.37 16 3 N -0.53 -4.94 4.34 -234.63 -1.02 -5.96 16 4 C 0.04 0.41 4.90 -3.83 -0.02 0.39 16 5 C 0.12 1.57 5.65 -4.05 -0.02 1.55 16 6 N -0.74 -10.17 5.56 -60.30 -0.33 -10.51 16 7 C 0.53 10.20 7.85 -10.98 -0.09 10.11 16 8 O -0.52 -12.12 15.86 5.55 0.09 -12.03 16 9 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 12 H 0.07 1.98 7.80 -52.48 -0.41 1.58 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 15 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.06 0.48 4.43 -3.83 -0.02 0.46 16 20 C 0.08 0.65 3.34 -25.96 -0.09 0.56 16 21 H 0.07 0.55 6.79 -51.93 -0.35 0.20 16 22 C -0.14 -0.85 5.92 -25.17 -0.15 -1.00 16 23 C -0.10 -0.59 1.05 -152.94 -0.16 -0.75 16 24 C -0.14 -0.72 8.29 37.16 0.31 -0.41 16 25 C -0.14 -0.68 8.31 37.16 0.31 -0.37 16 26 C 0.05 0.38 6.74 37.93 0.26 0.63 16 27 O -0.35 -3.58 11.32 -35.23 -0.40 -3.98 16 28 H 0.05 0.40 6.89 -51.93 -0.36 0.04 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.80 5.88 -51.93 -0.31 0.50 16 32 H 0.03 0.27 8.00 -51.93 -0.42 -0.15 16 33 H 0.08 0.69 6.63 -51.93 -0.34 0.35 16 34 H 0.04 0.33 8.12 -51.93 -0.42 -0.10 16 35 H 0.07 0.89 6.25 -51.93 -0.32 0.57 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.05 0.32 8.00 -51.93 -0.42 -0.10 16 42 H 0.08 0.65 6.55 -51.93 -0.34 0.31 16 43 H 0.08 0.39 7.73 -51.93 -0.40 -0.01 16 44 H 0.08 0.42 7.46 -51.93 -0.39 0.03 16 45 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 49 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.09 0.62 7.87 -51.93 -0.41 0.22 16 52 H 0.06 0.44 7.83 -51.93 -0.41 0.03 16 LS Contribution 422.97 15.07 6.37 6.37 Total: -1.00 -35.02 422.97 -10.11 -45.13 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -9.42 Total: -0.77 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 1.10 Total: -5.27 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.62 Total: -42.08 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.31 Total: -16.01 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.02 -10.11 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691007626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.404 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds