Wall clock time and date at job start Wed Apr 1 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47179 * 2 1 4 4 C 1.46900 * 110.99577 * 199.58235 * 3 2 1 5 5 C 1.52996 * 109.47507 * 66.04807 * 4 3 2 6 6 N 1.46494 * 109.47130 * 179.97438 * 5 4 3 7 7 C 1.34782 * 119.99875 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00131 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99772 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.46617 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99903 * 180.02562 * 10 9 7 12 12 H 1.08008 * 119.99527 * 0.02562 * 11 10 9 13 13 C 1.38793 * 120.00162 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00167 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99916 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47336 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47149 * 119.99865 * 15 13 11 18 18 H 1.48503 * 109.47118 * 239.99947 * 15 13 11 19 19 C 1.46896 * 110.99935 * 75.62570 * 3 2 1 20 20 C 1.52996 * 109.47293 * 199.83910 * 19 3 2 21 21 H 1.09006 * 110.41867 * 302.75429 * 20 19 3 22 22 C 1.54479 * 110.37485 * 180.44352 * 20 19 3 23 23 C 1.54503 * 104.18466 * 217.25805 * 22 20 19 24 24 C 1.53002 * 110.51497 * 118.57335 * 23 22 20 25 25 C 1.53000 * 110.51299 * 241.28634 * 23 22 20 26 26 C 1.54478 * 104.06392 * 359.93248 * 23 22 20 27 27 O 1.44419 * 104.80288 * 23.97575 * 26 23 22 28 28 H 1.08999 * 109.47396 * 294.84346 * 1 2 3 29 29 H 1.09002 * 109.47088 * 54.84139 * 1 2 3 30 30 H 1.09000 * 109.47264 * 174.83794 * 1 2 3 31 31 H 1.08998 * 109.47120 * 239.99759 * 2 1 3 32 32 H 1.09003 * 109.47078 * 120.00238 * 2 1 3 33 33 H 1.09005 * 109.46360 * 186.04842 * 4 3 2 34 34 H 1.08997 * 109.47277 * 306.04133 * 4 3 2 35 35 H 1.09006 * 109.46874 * 299.99684 * 5 4 3 36 36 H 1.08997 * 109.47403 * 59.99403 * 5 4 3 37 37 H 0.96998 * 120.00582 * 359.97438 * 6 5 4 38 38 H 1.08991 * 109.46972 * 299.99894 * 9 7 6 39 39 H 1.09001 * 109.46921 * 60.00299 * 9 7 6 40 40 H 0.96994 * 119.99967 * 180.02562 * 14 13 11 41 41 H 1.09004 * 109.47232 * 79.83906 * 19 3 2 42 42 H 1.09004 * 109.47508 * 319.84359 * 19 3 2 43 43 H 1.09000 * 110.51379 * 98.54207 * 22 20 19 44 44 H 1.09000 * 110.51231 * 335.97209 * 22 20 19 45 45 H 1.09008 * 109.46512 * 59.99806 * 24 23 22 46 46 H 1.08996 * 109.47374 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47217 * 300.00602 * 24 23 22 48 48 H 1.08996 * 109.47280 * 59.99921 * 25 23 22 49 49 H 1.09000 * 109.47260 * 180.02562 * 25 23 22 50 50 H 1.09002 * 109.47195 * 300.00067 * 25 23 22 51 51 H 1.08996 * 110.37554 * 142.81237 * 26 23 22 52 52 H 1.09001 * 110.37319 * 265.14361 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4134 1.4505 -0.4597 5 6 3.4849 1.0392 -1.9316 6 7 4.8747 1.1051 -2.3900 7 6 5.1803 0.7845 -3.6630 8 8 4.3048 0.4410 -4.4288 9 6 6.6100 0.8530 -4.1348 10 16 6.6945 0.3662 -5.8761 11 6 8.4262 0.5317 -6.1563 12 1 9.0747 0.8529 -5.3545 13 6 8.9571 0.2482 -7.4070 14 7 8.1668 -0.1438 -8.3840 15 14 10.7931 0.4230 -7.7038 16 1 11.4557 0.8757 -6.4543 17 1 11.3550 -0.8885 -8.1155 18 1 11.0281 1.4213 -8.7778 19 6 1.8742 1.9948 1.3285 20 6 1.9127 3.5186 1.1972 21 1 2.8385 3.8357 0.7170 22 6 1.7723 4.1817 2.5853 23 6 0.9087 5.4352 2.3205 24 6 -0.4002 5.3609 3.1093 25 6 1.6821 6.7051 2.6810 26 6 0.6290 5.3845 0.8021 27 8 0.7698 3.9916 0.4473 28 1 -0.3634 0.4318 0.9325 29 1 -0.3633 0.5918 -0.8402 30 1 -0.3634 -1.0235 -0.0925 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.7850 2.4692 -0.3486 34 1 4.0250 0.7736 0.1369 35 1 3.1133 0.0205 -2.0426 36 1 2.8734 1.7160 -2.5281 37 1 5.5750 1.3802 -1.7778 38 1 6.9809 1.8717 -4.0235 39 1 7.2221 0.1762 -3.5386 40 1 8.5379 -0.3422 -9.2579 41 1 2.6905 1.6648 1.9711 42 1 0.9227 1.6916 1.7653 43 1 2.7503 4.4667 2.9731 44 1 1.2679 3.5102 3.2801 45 1 -0.1792 5.3020 4.1751 46 1 -0.9952 6.2523 2.9107 47 1 -0.9584 4.4756 2.8046 48 1 2.5864 6.7640 2.0755 49 1 1.0579 7.5777 2.4885 50 1 1.9528 6.6783 3.7366 51 1 -0.3831 5.7294 0.5909 52 1 1.3573 5.9892 0.2617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691007626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:43 Heat of formation + Delta-G solvation = -116.314391 kcal Electronic energy + Delta-G solvation = -27808.323237 eV Core-core repulsion = 23932.614028 eV Total energy + Delta-G solvation = -3875.709210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97543 -40.60533 -38.86680 -35.85602 -35.33464 -34.58214 -32.64766 -32.22217 -30.69617 -28.74333 -28.21734 -27.64779 -26.88092 -25.82904 -23.98403 -22.49280 -21.89875 -21.34598 -20.19847 -19.81604 -17.88237 -17.69682 -17.07963 -16.87990 -16.82538 -16.70379 -16.41869 -15.96847 -15.82197 -15.66659 -15.26199 -14.97460 -14.76019 -14.68727 -14.38385 -14.23358 -14.08061 -13.79173 -13.51354 -13.34127 -13.15794 -13.01369 -12.91232 -12.82296 -12.70072 -12.60360 -12.47545 -12.41255 -12.25965 -12.05994 -11.81299 -11.70907 -11.57508 -11.45673 -11.31481 -11.15696 -10.99809 -10.52705 -10.26735 -10.12341 -9.26490 -8.66847 -8.34440 -6.12776 1.26538 1.41858 1.46911 1.58153 1.60399 2.16187 2.27618 2.89174 2.99764 3.10703 3.33431 3.54123 3.75239 3.79149 3.92173 3.95893 4.00696 4.05301 4.17040 4.23446 4.30616 4.35249 4.39542 4.46900 4.50469 4.50784 4.61105 4.62180 4.69028 4.74487 4.77860 4.82836 4.84707 4.88566 4.94434 4.97410 5.03801 5.06486 5.10390 5.15295 5.25859 5.32117 5.37244 5.41155 5.42362 5.42523 5.95677 6.09768 6.17260 6.20442 6.49684 7.06834 7.23840 8.75125 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.001760 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.317396 B =15905.182342 C =16893.212297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 N -0.544 5.544 4 C 0.056 3.944 5 C 0.128 3.872 6 N -0.711 5.711 7 C 0.533 3.467 8 O -0.567 6.567 9 C -0.128 4.128 10 S -0.155 6.155 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.065 3.935 20 C 0.078 3.922 21 H 0.062 0.938 22 C -0.138 4.138 23 C -0.097 4.097 24 C -0.133 4.133 25 C -0.136 4.136 26 C 0.044 3.956 27 O -0.380 6.380 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.417 0.583 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 10.466 31.742 35.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 N -0.269 5.269 4 C -0.072 4.072 5 C 0.004 3.996 6 N -0.366 5.366 7 C 0.319 3.681 8 O -0.445 6.445 9 C -0.279 4.279 10 S 0.073 5.927 11 C -0.693 4.693 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.179 1.179 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.063 4.063 20 C 0.020 3.980 21 H 0.080 0.920 22 C -0.176 4.176 23 C -0.098 4.098 24 C -0.190 4.190 25 C -0.194 4.194 26 C -0.033 4.033 27 O -0.299 6.299 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.086 0.914 51 H 0.107 0.893 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.225 9.982 29.862 34.974 hybrid contribution 2.559 0.161 0.866 2.706 sum -12.666 10.143 30.728 34.750 Atomic orbital electron populations 1.21698 0.94475 1.01641 1.01918 1.22205 0.96690 0.88167 1.01219 1.61756 1.19250 1.18815 1.27049 1.22156 0.89745 1.02537 0.92780 1.21231 0.81736 1.01100 0.95529 1.45612 1.10463 1.69470 1.11021 1.20105 0.89826 0.75991 0.82189 1.90701 1.50501 1.47822 1.55510 1.23359 0.96396 1.06645 1.01490 1.85634 1.11943 1.88701 1.06465 1.23245 0.92574 1.52935 1.00528 0.89773 1.26152 1.04729 0.93825 0.94567 1.70196 1.37745 1.43794 1.03106 0.84885 0.76009 0.78142 0.78768 1.17921 1.19931 1.19983 1.22236 1.02686 0.92364 0.88968 1.23104 0.89516 0.94140 0.91195 0.91970 1.23097 1.01264 0.96446 0.96768 1.21937 0.96677 0.96080 0.95067 1.21811 0.95414 1.01883 0.99927 1.21832 0.99625 0.95792 1.02115 1.23651 1.02011 0.83582 0.94055 1.89267 1.48998 1.24135 1.67497 0.92378 0.93494 0.91521 0.91459 0.93263 0.89194 0.92331 0.92516 0.93014 0.74570 0.87061 0.86962 0.92006 0.91346 0.89714 0.89236 0.89866 0.91551 0.92084 0.93095 0.92545 0.92013 0.91388 0.89269 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.96 71.98 0.72 -1.58 16 2 C 0.04 0.74 5.55 86.31 0.48 1.22 16 3 N -0.54 -9.51 4.34 -896.23 -3.89 -13.40 16 4 C 0.06 0.92 4.90 86.30 0.42 1.35 16 5 C 0.13 3.16 5.65 86.38 0.49 3.64 16 6 N -0.71 -18.40 5.56 -463.06 -2.57 -20.97 16 7 C 0.53 20.23 7.85 87.66 0.69 20.92 16 8 O -0.57 -27.41 15.86 -3.04 -0.05 -27.46 16 9 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 10 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 11 C -0.55 -31.29 9.50 67.95 0.65 -30.64 16 12 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 13 C 0.01 0.68 5.49 84.86 0.47 1.15 16 14 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 15 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 C 0.06 0.86 4.43 86.30 0.38 1.24 16 20 C 0.08 1.12 3.34 31.10 0.10 1.23 16 21 H 0.06 0.93 6.79 -2.38 -0.02 0.91 16 22 C -0.14 -1.33 5.92 31.61 0.19 -1.14 16 23 C -0.10 -1.00 1.05 -51.17 -0.05 -1.05 16 24 C -0.13 -1.21 8.29 71.98 0.60 -0.62 16 25 C -0.14 -1.09 8.31 71.98 0.60 -0.49 16 26 C 0.04 0.65 6.74 72.48 0.49 1.14 16 27 O -0.38 -7.69 11.32 -148.98 -1.69 -9.38 16 28 H 0.06 0.86 6.89 -2.39 -0.02 0.84 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.31 5.88 -2.39 -0.01 1.29 16 32 H 0.05 0.67 8.00 -2.39 -0.02 0.65 16 33 H 0.09 1.33 6.63 -2.38 -0.02 1.31 16 34 H 0.06 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.06 1.54 6.25 -2.38 -0.01 1.52 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.42 7.43 8.47 -92.71 -0.79 6.64 16 38 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 39 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.07 0.66 8.00 -2.38 -0.02 0.64 16 42 H 0.08 1.14 6.55 -2.38 -0.02 1.12 16 43 H 0.09 0.65 7.73 -2.39 -0.02 0.63 16 44 H 0.08 0.71 7.46 -2.39 -0.02 0.69 16 45 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.48 8.08 -2.39 -0.02 0.46 16 49 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.09 1.26 7.87 -2.39 -0.02 1.24 16 52 H 0.06 0.82 7.83 -2.39 -0.02 0.80 16 Total: -1.00 -78.73 422.97 -0.29 -79.02 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.10 Total: 20.77 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 6.65 Total: -8.28 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -6.17 Total: -90.58 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.74 Total: -36.84 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -78.73 -0.29 -79.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691007626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.293 kcal (2) G-P(sol) polarization free energy of solvation -78.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds