Wall clock time and date at job start Wed Apr 1 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47178 * 2 1 4 4 C 1.42901 * 113.99734 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47076 * 64.99834 * 5 4 3 7 7 C 1.46902 * 110.99627 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47022 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.58293 * 309.16864 * 8 7 6 10 10 C 1.53188 * 109.58650 * 188.88323 * 8 7 6 11 11 C 1.53046 * 109.31078 * 185.57646 * 10 8 7 12 12 H 1.09000 * 109.45801 * 301.34472 * 11 10 8 13 13 C 1.53002 * 109.45843 * 181.37444 * 11 10 8 14 14 C 1.53032 * 109.54122 * 61.36471 * 11 10 8 15 15 C 1.53195 * 109.31339 * 298.63820 * 14 11 10 16 16 N 1.46933 * 109.58836 * 69.44717 * 8 7 6 17 17 C 1.34772 * 120.62625 * 353.39366 * 16 8 7 18 18 O 1.21279 * 120.00586 * 5.92543 * 17 16 8 19 19 C 1.50707 * 119.99490 * 185.92229 * 17 16 8 20 20 S 1.81000 * 109.47027 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00014 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00081 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00493 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99992 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47494 * 89.99575 * 25 23 21 27 27 H 1.48500 * 109.47204 * 209.99694 * 25 23 21 28 28 H 1.48502 * 109.46991 * 329.99731 * 25 23 21 29 29 H 1.08997 * 109.46907 * 300.00364 * 1 2 3 30 30 H 1.09003 * 109.46597 * 59.99968 * 1 2 3 31 31 H 1.08997 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47430 * 239.99583 * 2 1 3 33 33 H 1.09003 * 109.46597 * 120.00032 * 2 1 3 34 34 H 1.08997 * 109.47435 * 59.99852 * 4 3 2 35 35 H 1.09006 * 109.47192 * 299.99773 * 4 3 2 36 36 H 1.09000 * 109.46523 * 305.00028 * 5 4 3 37 37 H 1.08994 * 109.46910 * 184.99726 * 5 4 3 38 38 H 1.00901 * 110.99620 * 303.95298 * 6 5 4 39 39 H 1.09004 * 109.46709 * 299.99032 * 7 6 5 40 40 H 1.08994 * 109.47402 * 59.99343 * 7 6 5 41 41 H 1.08998 * 109.50091 * 305.52564 * 10 8 7 42 42 H 1.09000 * 109.50085 * 65.59610 * 10 8 7 43 43 H 1.08997 * 109.47357 * 59.99896 * 13 11 10 44 44 H 1.08996 * 109.46707 * 179.97438 * 13 11 10 45 45 H 1.08999 * 109.46698 * 299.99707 * 13 11 10 46 46 H 1.09005 * 109.50014 * 58.58122 * 14 11 10 47 47 H 1.09001 * 109.50219 * 178.68474 * 14 11 10 48 48 H 1.09003 * 109.59044 * 174.42097 * 15 14 11 49 49 H 1.09000 * 109.58502 * 294.70125 * 15 14 11 50 50 H 1.08998 * 109.47065 * 300.00273 * 19 17 16 51 51 H 1.08997 * 109.46775 * 60.00560 * 19 17 16 52 52 H 0.96998 * 120.00518 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 7 3.3858 3.5620 1.2564 7 6 3.7480 4.9852 1.2922 8 6 3.2741 5.5991 2.6111 9 1 2.2233 5.3570 2.7700 10 6 3.4490 7.1201 2.5617 11 6 3.1053 7.7138 3.9298 12 1 2.0798 7.4530 4.1915 13 6 3.2458 9.2363 3.8746 14 6 4.0596 7.1519 4.9860 15 6 3.8917 5.6312 5.0628 16 7 4.0760 5.0637 3.7198 17 6 4.9658 4.0738 3.5082 18 8 5.1890 3.6900 2.3796 19 6 5.6834 3.4438 4.6741 20 16 6.8031 2.1567 4.0693 21 6 7.4887 1.6055 5.5959 22 1 7.1758 2.0606 6.5240 23 6 8.4309 0.5863 5.6058 24 7 8.9436 0.1748 6.7462 25 14 8.9726 -0.2004 4.0005 26 1 10.1411 0.5375 3.4570 27 1 9.3512 -1.6153 4.2456 28 1 7.8562 -0.1490 3.0226 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8341 0.9763 -0.8891 35 1 3.8333 0.9766 0.8909 36 1 3.3500 3.4415 -0.8407 37 1 4.9083 3.0253 -0.0879 38 1 2.3938 3.4380 1.3936 39 1 4.8303 5.0867 1.2120 40 1 3.2718 5.5024 0.4593 41 1 4.4823 7.3596 2.3104 42 1 2.7845 7.5384 1.8058 43 1 2.5654 9.6370 3.1232 44 1 3.0006 9.6593 4.8487 45 1 4.2711 9.4973 3.6124 46 1 5.0872 7.3910 4.7119 47 1 3.8293 7.5928 5.9559 48 1 4.6368 5.2150 5.7409 49 1 2.8925 5.3918 5.4266 50 1 6.2573 4.2054 5.2020 51 1 4.9546 3.0019 5.3535 52 1 9.6023 -0.5371 6.7531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707154342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:23 Heat of formation + Delta-G solvation = -62.580499 kcal Electronic energy + Delta-G solvation = -29484.756819 eV Core-core repulsion = 25611.377686 eV Total energy + Delta-G solvation = -3873.379133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.28922 -38.11040 -37.35250 -35.65059 -33.74113 -32.48663 -32.38293 -31.06342 -29.31891 -28.31886 -27.78358 -25.55222 -24.63191 -23.35188 -22.83124 -21.88258 -21.65305 -20.32679 -19.00848 -17.48953 -16.75992 -16.35936 -16.15738 -15.93769 -15.36799 -15.17697 -14.93859 -14.77852 -14.60390 -14.25300 -13.93499 -13.71501 -13.51069 -13.42067 -13.12610 -12.99507 -12.77169 -12.67582 -12.52996 -12.13978 -12.05657 -11.93651 -11.83301 -11.66592 -11.33443 -11.29591 -11.20639 -11.15617 -11.00431 -10.94654 -10.92444 -10.56133 -10.47631 -10.37494 -9.80477 -9.52432 -8.95412 -8.50072 -8.38333 -8.32957 -7.70745 -6.81096 -6.23917 -3.92975 2.87316 3.29894 3.34412 3.35867 3.52588 3.70601 3.74783 4.29046 4.37087 4.57426 4.58808 4.74719 4.83360 4.96565 5.03876 5.06155 5.09938 5.15352 5.20874 5.27823 5.29365 5.37486 5.40112 5.42336 5.48752 5.50478 5.55268 5.58079 5.59886 5.63608 5.68436 5.73313 5.81074 5.84776 5.89288 5.94217 5.95347 5.96572 5.99202 6.09318 6.13232 6.17434 6.20888 6.35112 6.86629 7.24468 7.37377 7.80878 7.82497 7.99445 8.47360 8.89068 9.22928 10.85674 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006300 B = 0.004569 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4443.672759 B = 6126.210866 C = 9721.224979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.063 3.937 5 C 0.080 3.920 6 N -0.648 5.648 7 C 0.072 3.928 8 C 0.156 3.844 9 H 0.063 0.937 10 C -0.124 4.124 11 C -0.090 4.090 12 H 0.070 0.930 13 C -0.146 4.146 14 C -0.130 4.130 15 C 0.110 3.890 16 N -0.614 5.614 17 C 0.526 3.474 18 O -0.465 6.465 19 C -0.118 4.118 20 S -0.141 6.141 21 C -0.519 4.519 22 H 0.086 0.914 23 C 0.095 3.905 24 N -0.883 5.883 25 Si 0.857 3.143 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.235 1.235 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.088 0.912 38 H 0.325 0.675 39 H 0.098 0.902 40 H 0.012 0.988 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 12.292 -10.287 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.314 6.314 4 C -0.013 4.013 5 C -0.049 4.049 6 N -0.280 5.280 7 C -0.057 4.057 8 C 0.052 3.948 9 H 0.081 0.919 10 C -0.163 4.163 11 C -0.109 4.109 12 H 0.088 0.912 13 C -0.203 4.203 14 C -0.169 4.169 15 C -0.014 4.014 16 N -0.352 5.352 17 C 0.312 3.688 18 O -0.335 6.335 19 C -0.269 4.269 20 S 0.085 5.915 21 C -0.667 4.667 22 H 0.104 0.896 23 C -0.113 4.113 24 N -0.521 5.521 25 Si 0.682 3.318 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.029 0.971 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.080 0.920 50 H 0.105 0.895 51 H 0.107 0.893 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.513 11.516 -11.540 22.504 hybrid contribution -0.357 0.118 0.457 0.592 sum -15.870 11.635 -11.083 22.585 Atomic orbital electron populations 1.21727 0.94130 1.01974 1.02821 1.22391 0.95183 0.84194 1.00058 1.87796 1.21955 1.26168 1.95488 1.22609 0.80422 0.97634 1.00669 1.21753 1.00894 0.92066 0.90174 1.60702 1.19418 1.13174 1.34660 1.22125 1.02868 0.87623 0.93066 1.21096 0.94468 0.92129 0.87148 0.91900 1.22000 1.02496 0.94682 0.97090 1.21087 0.99541 0.95157 0.95082 0.91199 1.21821 1.01810 0.95151 1.01547 1.21999 1.00300 0.95449 0.99121 1.21654 1.02083 0.93151 0.84526 1.47871 1.41394 1.37810 1.08137 1.19970 0.79428 0.78963 0.90437 1.90723 1.60298 1.59985 1.22515 1.23330 1.01780 1.01978 0.99833 1.84631 1.50214 1.42163 1.14455 1.22365 1.28040 1.23915 0.92335 0.89633 1.24708 0.94665 0.95340 0.96621 1.69944 1.28445 1.28358 1.25307 0.86728 0.81334 0.79185 0.84533 1.19367 1.20156 1.15922 0.91884 0.92232 0.91361 0.93866 0.93210 0.93615 0.91587 0.96200 0.89338 0.85750 0.88425 0.97054 0.91297 0.91244 0.92828 0.92688 0.92660 0.91344 0.90921 0.89422 0.91960 0.89490 0.89306 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.66 6.66 37.16 0.25 0.91 16 3 O -0.39 -5.38 9.86 -35.23 -0.35 -5.72 16 4 C 0.06 0.88 6.28 37.16 0.23 1.11 16 5 C 0.08 1.14 5.72 -3.82 -0.02 1.11 16 6 N -0.65 -9.52 3.93 -113.78 -0.45 -9.96 16 7 C 0.07 0.95 4.30 -3.82 -0.02 0.94 16 8 C 0.16 1.82 3.07 -67.60 -0.21 1.62 16 9 H 0.06 0.72 8.11 -51.93 -0.42 0.29 16 10 C -0.12 -1.17 4.64 -26.61 -0.12 -1.29 16 11 C -0.09 -0.75 2.68 -90.58 -0.24 -1.00 16 12 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 13 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 14 C -0.13 -1.20 5.36 -26.61 -0.14 -1.34 16 15 C 0.11 1.22 6.32 -3.69 -0.02 1.19 16 16 N -0.61 -8.33 2.98 -165.19 -0.49 -8.83 16 17 C 0.53 9.26 7.40 -10.98 -0.08 9.18 16 18 O -0.46 -9.03 9.36 5.56 0.05 -8.97 16 19 C -0.12 -2.35 4.58 36.01 0.16 -2.18 16 20 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 21 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 22 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 23 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.90 13.97 55.49 0.78 -26.13 16 25 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 38 H 0.32 4.66 8.27 -39.29 -0.32 4.33 16 39 H 0.10 1.54 6.30 -51.93 -0.33 1.21 16 40 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 1.03 5.97 -51.93 -0.31 0.72 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.64 7.44 -51.92 -0.39 1.26 16 51 H 0.09 1.72 8.13 -51.92 -0.42 1.30 16 52 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 414.34 15.07 6.24 6.24 Total: -1.00 -32.11 414.34 -9.99 -42.10 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -9.79 Total: 3.16 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 0.72 Total: -3.51 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.16 Total: -44.92 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.30 Total: -14.70 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.11 -9.99 -42.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707154342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.484 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds