Wall clock time and date at job start Wed Apr 1 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47178 * 2 1 4 4 C 1.42901 * 113.99734 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47076 * 64.99834 * 5 4 3 7 7 C 1.46902 * 110.99627 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47022 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.58293 * 309.16864 * 8 7 6 10 10 C 1.53188 * 109.58650 * 188.88323 * 8 7 6 11 11 C 1.53046 * 109.31078 * 185.57646 * 10 8 7 12 12 H 1.09000 * 109.45801 * 301.34472 * 11 10 8 13 13 C 1.53002 * 109.45843 * 181.37444 * 11 10 8 14 14 C 1.53032 * 109.54122 * 61.36471 * 11 10 8 15 15 C 1.53195 * 109.31339 * 298.63820 * 14 11 10 16 16 N 1.46933 * 109.58836 * 69.44717 * 8 7 6 17 17 C 1.34772 * 120.62625 * 353.39366 * 16 8 7 18 18 O 1.21279 * 120.00586 * 5.92543 * 17 16 8 19 19 C 1.50707 * 119.99490 * 185.92229 * 17 16 8 20 20 S 1.81000 * 109.47027 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00014 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00081 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00493 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99992 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47494 * 89.99575 * 25 23 21 27 27 H 1.48500 * 109.47204 * 209.99694 * 25 23 21 28 28 H 1.48502 * 109.46991 * 329.99731 * 25 23 21 29 29 H 1.08997 * 109.46907 * 300.00364 * 1 2 3 30 30 H 1.09003 * 109.46597 * 59.99968 * 1 2 3 31 31 H 1.08997 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47430 * 239.99583 * 2 1 3 33 33 H 1.09003 * 109.46597 * 120.00032 * 2 1 3 34 34 H 1.08997 * 109.47435 * 59.99852 * 4 3 2 35 35 H 1.09006 * 109.47192 * 299.99773 * 4 3 2 36 36 H 1.09000 * 109.46523 * 305.00028 * 5 4 3 37 37 H 1.08994 * 109.46910 * 184.99726 * 5 4 3 38 38 H 1.00901 * 110.99620 * 303.95298 * 6 5 4 39 39 H 1.09004 * 109.46709 * 299.99032 * 7 6 5 40 40 H 1.08994 * 109.47402 * 59.99343 * 7 6 5 41 41 H 1.08998 * 109.50091 * 305.52564 * 10 8 7 42 42 H 1.09000 * 109.50085 * 65.59610 * 10 8 7 43 43 H 1.08997 * 109.47357 * 59.99896 * 13 11 10 44 44 H 1.08996 * 109.46707 * 179.97438 * 13 11 10 45 45 H 1.08999 * 109.46698 * 299.99707 * 13 11 10 46 46 H 1.09005 * 109.50014 * 58.58122 * 14 11 10 47 47 H 1.09001 * 109.50219 * 178.68474 * 14 11 10 48 48 H 1.09003 * 109.59044 * 174.42097 * 15 14 11 49 49 H 1.09000 * 109.58502 * 294.70125 * 15 14 11 50 50 H 1.08998 * 109.47065 * 300.00273 * 19 17 16 51 51 H 1.08997 * 109.46775 * 60.00560 * 19 17 16 52 52 H 0.96998 * 120.00518 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 7 3.3858 3.5620 1.2564 7 6 3.7480 4.9852 1.2922 8 6 3.2741 5.5991 2.6111 9 1 2.2233 5.3570 2.7700 10 6 3.4490 7.1201 2.5617 11 6 3.1053 7.7138 3.9298 12 1 2.0798 7.4530 4.1915 13 6 3.2458 9.2363 3.8746 14 6 4.0596 7.1519 4.9860 15 6 3.8917 5.6312 5.0628 16 7 4.0760 5.0637 3.7198 17 6 4.9658 4.0738 3.5082 18 8 5.1890 3.6900 2.3796 19 6 5.6834 3.4438 4.6741 20 16 6.8031 2.1567 4.0693 21 6 7.4887 1.6055 5.5959 22 1 7.1758 2.0606 6.5240 23 6 8.4309 0.5863 5.6058 24 7 8.9436 0.1748 6.7462 25 14 8.9726 -0.2004 4.0005 26 1 10.1411 0.5375 3.4570 27 1 9.3512 -1.6153 4.2456 28 1 7.8562 -0.1490 3.0226 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8341 0.9763 -0.8891 35 1 3.8333 0.9766 0.8909 36 1 3.3500 3.4415 -0.8407 37 1 4.9083 3.0253 -0.0879 38 1 2.3938 3.4380 1.3936 39 1 4.8303 5.0867 1.2120 40 1 3.2718 5.5024 0.4593 41 1 4.4823 7.3596 2.3104 42 1 2.7845 7.5384 1.8058 43 1 2.5654 9.6370 3.1232 44 1 3.0006 9.6593 4.8487 45 1 4.2711 9.4973 3.6124 46 1 5.0872 7.3910 4.7119 47 1 3.8293 7.5928 5.9559 48 1 4.6368 5.2150 5.7409 49 1 2.8925 5.3918 5.4266 50 1 6.2573 4.2054 5.2020 51 1 4.9546 3.0019 5.3535 52 1 9.6023 -0.5371 6.7531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707154342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:22 Heat of formation + Delta-G solvation = -82.368520 kcal Electronic energy + Delta-G solvation = -29485.614892 eV Core-core repulsion = 25611.377686 eV Total energy + Delta-G solvation = -3874.237206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41972 -39.13830 -38.43341 -36.73659 -34.76527 -34.63858 -33.46277 -31.94405 -30.62356 -29.40683 -28.72180 -27.81364 -25.60079 -24.22548 -23.67800 -22.98501 -22.75881 -21.18031 -20.35886 -19.36685 -17.86716 -17.54138 -17.19905 -17.15677 -17.01507 -16.55621 -16.21530 -15.83347 -15.72788 -15.35365 -15.04068 -14.95857 -14.83382 -14.68979 -14.45059 -14.13927 -13.94809 -13.59403 -13.47164 -13.36220 -13.29784 -13.03634 -12.95200 -12.81742 -12.71800 -12.62570 -12.47678 -12.29661 -12.18626 -12.05128 -11.95544 -11.84659 -11.70995 -11.31743 -11.21587 -11.15500 -10.55241 -10.44408 -9.85441 -9.44112 -8.91518 -8.81897 -8.49950 -6.17801 1.04515 1.31147 1.47821 1.60314 1.94174 2.24998 2.28293 2.75663 2.76950 2.88383 3.29494 3.65909 3.84161 3.93953 4.01492 4.12362 4.15563 4.19680 4.26482 4.29090 4.31491 4.36772 4.40510 4.48307 4.49484 4.50051 4.53822 4.61695 4.71693 4.75765 4.80999 4.84112 4.90603 4.93850 4.98329 5.03723 5.04154 5.08990 5.14511 5.21628 5.25259 5.27248 5.41838 5.57030 5.72099 5.82453 6.12438 6.22422 6.30729 6.58423 6.72859 6.95574 7.54377 8.63013 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006300 B = 0.004569 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4443.672759 B = 6126.210866 C = 9721.224979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.404 6.404 4 C 0.070 3.930 5 C 0.086 3.914 6 N -0.662 5.662 7 C 0.078 3.922 8 C 0.156 3.844 9 H 0.076 0.924 10 C -0.117 4.117 11 C -0.086 4.086 12 H 0.081 0.919 13 C -0.142 4.142 14 C -0.125 4.125 15 C 0.103 3.897 16 N -0.605 5.605 17 C 0.525 3.475 18 O -0.487 6.487 19 C -0.105 4.105 20 S -0.161 6.161 21 C -0.531 4.531 22 H 0.055 0.945 23 C 0.045 3.955 24 N -0.921 5.921 25 Si 0.916 3.084 26 H -0.263 1.263 27 H -0.261 1.261 28 H -0.235 1.235 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.326 0.674 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.091 0.909 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.417 13.585 -11.548 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 O -0.324 6.324 4 C -0.007 4.007 5 C -0.044 4.044 6 N -0.295 5.295 7 C -0.051 4.051 8 C 0.053 3.947 9 H 0.094 0.906 10 C -0.156 4.156 11 C -0.105 4.105 12 H 0.099 0.901 13 C -0.200 4.200 14 C -0.163 4.163 15 C -0.020 4.020 16 N -0.342 5.342 17 C 0.310 3.690 18 O -0.360 6.360 19 C -0.256 4.256 20 S 0.066 5.934 21 C -0.678 4.678 22 H 0.073 0.927 23 C -0.160 4.160 24 N -0.559 5.559 25 Si 0.738 3.262 26 H -0.187 1.187 27 H -0.185 1.185 28 H -0.159 1.159 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.523 12.842 -12.782 25.206 hybrid contribution 0.158 -0.194 0.917 0.951 sum -17.364 12.649 -11.865 24.542 Atomic orbital electron populations 1.21723 0.92376 1.03288 1.02725 1.22608 0.96633 0.83181 1.00224 1.87778 1.21420 1.27676 1.95503 1.22473 0.80869 0.97388 0.99932 1.21643 0.99829 0.92347 0.90544 1.60651 1.19459 1.14210 1.35148 1.22017 1.01275 0.87221 0.94607 1.21275 0.94389 0.93483 0.85561 0.90610 1.21965 1.02270 0.92764 0.98565 1.21079 0.99705 0.95869 0.93802 0.90068 1.21782 1.01705 0.94105 1.02386 1.21969 0.99935 0.93808 1.00608 1.21876 1.02728 0.94496 0.82906 1.47825 1.40100 1.36389 1.09878 1.19602 0.80244 0.79993 0.89165 1.90742 1.61356 1.61127 1.22755 1.23320 1.00885 1.00408 1.01024 1.84473 1.51669 1.44527 1.12740 1.22538 1.28332 1.23947 0.93005 0.92673 1.25570 0.94693 0.95847 0.99853 1.70027 1.29288 1.29235 1.27364 0.85839 0.80916 0.78978 0.80437 1.18734 1.18517 1.15886 0.92460 0.91783 0.89373 0.92663 0.94104 0.92164 0.94479 0.94953 0.91162 0.85554 0.91183 0.95234 0.92591 0.89282 0.91902 0.91842 0.93309 0.92675 0.88979 0.90521 0.90163 0.88781 0.89015 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 1.08 6.66 71.98 0.48 1.56 16 3 O -0.40 -10.73 9.86 -148.98 -1.47 -12.20 16 4 C 0.07 1.95 6.28 71.98 0.45 2.41 16 5 C 0.09 2.41 5.72 86.30 0.49 2.90 16 6 N -0.66 -19.18 3.93 -513.88 -2.02 -21.20 16 7 C 0.08 1.97 4.30 86.30 0.37 2.34 16 8 C 0.16 3.35 3.07 44.97 0.14 3.49 16 9 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 10 C -0.12 -1.91 4.64 30.67 0.14 -1.77 16 11 C -0.09 -1.17 2.68 -10.77 -0.03 -1.20 16 12 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 13 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 14 C -0.13 -2.01 5.36 30.67 0.16 -1.85 16 15 C 0.10 2.10 6.32 86.36 0.55 2.65 16 16 N -0.61 -15.73 2.98 -794.93 -2.37 -18.10 16 17 C 0.52 18.45 7.40 87.66 0.65 19.10 16 18 O -0.49 -19.13 9.36 -3.03 -0.03 -19.16 16 19 C -0.11 -4.22 4.58 71.24 0.33 -3.89 16 20 S -0.16 -8.22 18.55 -56.49 -1.05 -9.27 16 21 C -0.53 -31.63 10.04 67.95 0.68 -30.95 16 22 H 0.05 3.50 8.03 -2.91 -0.02 3.48 16 23 C 0.05 2.70 5.50 84.86 0.47 3.17 16 24 N -0.92 -57.08 13.97 21.65 0.30 -56.78 16 25 Si 0.92 45.60 27.74 68.60 1.90 47.50 16 26 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 28 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 2.22 7.88 -2.39 -0.02 2.20 16 38 H 0.33 9.06 8.27 -89.69 -0.74 8.32 16 39 H 0.07 2.21 6.30 -2.39 -0.02 2.19 16 40 H 0.03 0.65 8.13 -2.39 -0.02 0.63 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 48 H 0.08 1.75 5.97 -2.39 -0.01 1.73 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 50 H 0.09 3.61 7.44 -2.40 -0.02 3.59 16 51 H 0.09 3.60 8.13 -2.40 -0.02 3.58 16 52 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -70.64 414.34 1.65 -68.99 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.09 Total: 24.89 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 6.28 Total: -4.68 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -4.08 Total: -96.08 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -1.50 Total: -31.35 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.05 Total: -9.27 kcal Total: -70.64 1.65 -68.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707154342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.381 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds