Wall clock time and date at job start Wed Apr 1 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47525 * 2 1 4 4 C 1.34771 * 119.99800 * 269.99820 * 3 2 1 5 5 O 1.21285 * 120.00037 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.00245 * 0.02562 * 4 3 2 7 7 S 1.81000 * 109.47200 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99608 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00427 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99879 * 180.02562 * 8 7 6 11 11 N 1.31629 * 119.99530 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00022 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47508 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47184 * 119.99959 * 12 10 8 15 15 H 1.48499 * 109.47103 * 239.99867 * 12 10 8 16 16 C 1.46503 * 120.00065 * 89.99521 * 3 2 1 17 17 H 1.09003 * 110.76356 * 356.80801 * 16 3 2 18 18 C 1.55138 * 110.70598 * 233.60350 * 16 3 2 19 19 C 1.54910 * 101.65178 * 205.96568 * 18 16 3 20 20 N 1.47848 * 104.79561 * 37.06877 * 19 18 16 21 21 C 1.46894 * 111.00001 * 213.63301 * 20 19 18 22 22 C 1.52997 * 109.47515 * 290.84537 * 21 20 19 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46886 * 180.02562 * 23 22 21 25 25 H 1.08994 * 109.47704 * 54.99481 * 24 23 22 26 26 C 1.53000 * 109.47194 * 175.00077 * 24 23 22 27 27 O 1.42908 * 109.46995 * 294.99566 * 24 23 22 28 28 C 1.47440 * 108.56650 * 335.90423 * 20 19 18 29 29 H 1.08998 * 109.47014 * 300.00065 * 1 2 3 30 30 H 1.09001 * 109.46735 * 60.00228 * 1 2 3 31 31 H 1.08995 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47354 * 239.99265 * 2 1 3 33 33 H 1.09004 * 109.47173 * 120.00022 * 2 1 3 34 34 H 1.09000 * 109.46575 * 300.00023 * 6 4 3 35 35 H 1.09005 * 109.46976 * 59.99210 * 6 4 3 36 36 H 0.97008 * 119.99679 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.98715 * 324.05500 * 18 16 3 38 38 H 1.08987 * 110.99330 * 87.87448 * 18 16 3 39 39 H 1.08997 * 110.37047 * 278.24221 * 19 18 16 40 40 H 1.08999 * 110.37129 * 155.89198 * 19 18 16 41 41 H 1.09002 * 109.47104 * 170.84269 * 21 20 19 42 42 H 1.08998 * 109.46828 * 50.85102 * 21 20 19 43 43 H 1.09002 * 109.47153 * 59.99762 * 22 21 20 44 44 H 1.09001 * 109.46832 * 299.99953 * 22 21 20 45 45 H 1.09001 * 109.47194 * 299.99650 * 23 22 21 46 46 H 1.08992 * 109.47399 * 59.99823 * 23 22 21 47 47 H 1.09004 * 109.47242 * 59.99175 * 26 24 23 48 48 H 1.09000 * 109.47237 * 179.97438 * 26 24 23 49 49 H 1.09002 * 109.46818 * 299.99696 * 26 24 23 50 50 H 0.96694 * 113.99717 * 180.02562 * 27 24 23 51 51 H 1.09009 * 109.88750 * 120.39258 * 28 20 19 52 52 H 1.08999 * 109.89065 * 241.57860 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0164 -1.1672 5 8 2.6470 3.1601 -1.1672 6 6 1.9914 1.3062 -2.4723 7 16 2.3830 2.4153 -3.8481 8 6 2.0097 1.3591 -5.2082 9 1 1.6545 0.3548 -5.0305 10 6 2.1722 1.8179 -6.5081 11 7 2.6055 3.0418 -6.7247 12 14 1.7758 0.6985 -7.9500 13 1 1.3094 -0.6167 -7.4421 14 1 0.7081 1.3160 -8.7771 15 1 2.9940 0.5066 -8.7771 16 6 2.2625 2.0718 1.2687 17 1 1.9796 1.4421 2.1122 18 6 1.5013 3.4229 1.3131 19 6 2.3698 4.2389 2.3029 20 7 3.7610 3.8374 2.0041 21 6 4.5820 3.8372 3.2222 22 6 4.7850 5.2761 3.7008 23 6 5.6407 5.2758 4.9692 24 6 5.8432 6.7147 5.4481 25 1 4.8731 7.1943 5.5783 26 6 6.5918 6.7076 6.7824 27 8 6.6051 7.4367 4.4783 28 6 3.7405 2.5016 1.3804 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.6212 0.4185 -2.5302 35 1 0.9432 1.0124 -2.5298 36 1 2.7187 3.3626 -7.6332 37 1 1.4833 3.8933 0.3300 38 1 0.4909 3.2893 1.6990 39 1 2.1139 3.9842 3.3313 40 1 2.2381 5.3073 2.1314 41 1 5.5505 3.3856 3.0075 42 1 4.0780 3.2633 3.9999 43 1 3.8165 5.7277 3.9155 44 1 5.2891 5.8499 2.9231 45 1 5.1370 4.7019 5.7471 46 1 6.6091 4.8244 4.7541 47 1 7.5620 6.2280 6.6521 48 1 6.7365 7.7327 7.1233 49 1 6.0107 6.1569 7.5221 50 1 6.7726 8.3587 4.7168 51 1 4.1889 2.5488 0.3880 52 1 4.2867 1.7931 2.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715037249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:27 Heat of formation + Delta-G solvation = -89.081391 kcal Electronic energy + Delta-G solvation = -28293.309538 eV Core-core repulsion = 24418.781239 eV Total energy + Delta-G solvation = -3874.528298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28579 -38.46423 -37.78185 -35.65615 -34.23008 -32.39986 -31.97875 -30.37495 -29.76110 -29.35054 -27.53098 -25.63537 -25.36562 -23.30213 -22.40157 -21.74221 -21.13034 -20.53774 -18.76901 -17.79333 -17.55032 -16.63683 -16.52872 -15.71443 -15.32275 -15.00475 -14.83624 -14.78162 -14.68057 -14.36206 -13.85435 -13.78263 -13.50923 -13.32772 -13.26901 -13.08781 -12.83581 -12.59369 -12.57949 -12.41724 -12.14879 -11.97478 -11.84900 -11.65740 -11.51823 -11.26362 -11.18732 -11.16574 -11.04537 -10.98841 -10.85045 -10.72916 -10.65376 -10.59095 -10.28344 -9.76587 -9.05173 -9.04517 -8.56569 -8.16958 -8.12653 -6.45559 -6.18778 -3.88568 2.93370 3.11472 3.23131 3.27300 3.32524 3.61830 3.92019 3.96442 4.23089 4.44544 4.62437 4.64333 4.70952 4.78909 4.80960 4.93841 4.95963 5.09840 5.13762 5.16062 5.21692 5.22951 5.29377 5.31018 5.33294 5.36890 5.43629 5.55085 5.55586 5.57924 5.62126 5.67933 5.70971 5.77678 5.79052 5.90139 5.94425 5.99219 6.07769 6.09316 6.14945 6.25284 6.29362 6.39345 6.87726 7.00980 7.14622 7.36634 7.61401 7.63335 8.38164 8.65541 9.26583 10.88594 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.002092 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.558749 B =13382.384977 C =14750.678618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.614 5.614 4 C 0.531 3.469 5 O -0.497 6.497 6 C -0.151 4.151 7 S -0.059 6.059 8 C -0.534 4.534 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.867 5.867 12 Si 0.917 3.083 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.134 3.866 17 H 0.086 0.914 18 C -0.148 4.148 19 C 0.051 3.949 20 N -0.517 5.517 21 C 0.052 3.948 22 C -0.111 4.111 23 C -0.112 4.112 24 C 0.100 3.900 25 H 0.053 0.947 26 C -0.187 4.187 27 O -0.563 6.563 28 C 0.038 3.962 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.267 0.733 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.375 0.625 51 H 0.093 0.907 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -0.446 27.710 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.350 5.350 4 C 0.319 3.681 5 O -0.370 6.370 6 C -0.302 4.302 7 S 0.167 5.833 8 C -0.683 4.683 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.744 3.256 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.029 3.971 17 H 0.104 0.896 18 C -0.186 4.186 19 C -0.077 4.077 20 N -0.241 5.241 21 C -0.077 4.077 22 C -0.149 4.149 23 C -0.150 4.150 24 C 0.041 3.959 25 H 0.071 0.929 26 C -0.244 4.244 27 O -0.369 6.369 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.222 0.778 51 H 0.112 0.888 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.932 1.150 26.923 27.017 hybrid contribution -1.128 -2.251 0.094 2.520 sum 0.804 -1.101 27.017 27.051 Atomic orbital electron populations 1.22228 0.96029 1.02075 1.02702 1.21547 0.94447 0.82541 1.03107 1.47957 1.67852 1.14077 1.05131 1.20288 0.76786 0.86710 0.84307 1.90713 1.42719 1.16971 1.86598 1.23608 1.04574 1.04504 0.97470 1.85415 1.86831 1.17760 0.93251 1.22906 1.51571 1.01514 0.92290 0.90984 1.24988 0.94731 0.95527 0.98361 1.70034 1.43036 1.15629 1.21506 0.86136 0.78161 0.80097 0.81210 1.19651 1.20600 1.20584 1.22153 0.95437 0.93778 0.85767 0.89575 1.23201 0.97444 0.95259 1.02736 1.22936 0.87479 1.00698 0.96568 1.63502 1.10480 1.25494 1.24648 1.22348 0.97816 0.97000 0.90503 1.21495 0.99658 0.96532 0.97236 1.21591 1.01057 0.94359 0.97993 1.21802 0.93375 0.93267 0.87409 0.92854 1.22534 1.01774 1.02258 0.97872 1.86591 1.75815 1.27369 1.47098 1.23161 0.95874 0.88630 1.01435 0.92641 0.91848 0.91691 0.89863 0.90887 0.89526 0.89448 0.92271 0.87479 0.91464 0.94232 0.90216 0.91039 0.95363 0.92316 0.90081 0.91032 0.91125 0.91781 0.92465 0.91685 0.77814 0.88835 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.11 1.15 5.91 -4.04 -0.02 1.13 16 3 N -0.61 -8.62 2.54 -164.03 -0.42 -9.03 16 4 C 0.53 9.96 6.80 -10.98 -0.07 9.89 16 5 O -0.50 -11.03 12.22 5.55 0.07 -10.96 16 6 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 7 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 8 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 9 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 10 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 11 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 12 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.13 1.68 3.43 -66.11 -0.23 1.46 16 17 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 18 C -0.15 -1.97 6.38 -24.59 -0.16 -2.12 16 19 C 0.05 0.62 5.78 -2.29 -0.01 0.60 16 20 N -0.52 -6.96 5.16 -231.25 -1.19 -8.15 16 21 C 0.05 0.55 4.56 -3.83 -0.02 0.53 16 22 C -0.11 -1.12 5.15 -26.73 -0.14 -1.26 16 23 C -0.11 -0.90 4.92 -26.73 -0.13 -1.03 16 24 C 0.10 0.73 3.58 -26.73 -0.10 0.64 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 C -0.19 -1.04 9.53 37.16 0.35 -0.69 16 27 O -0.56 -4.99 12.86 -35.23 -0.45 -5.44 16 28 C 0.04 0.52 6.13 -2.84 -0.02 0.50 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.76 7.22 -51.93 -0.37 0.38 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 33 H 0.07 0.61 7.98 -51.93 -0.41 0.20 16 34 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 35 H 0.09 1.67 7.18 -51.91 -0.37 1.30 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.11 1.86 5.69 -51.93 -0.30 1.56 16 38 H 0.07 0.77 8.14 -51.94 -0.42 0.34 16 39 H 0.04 0.40 7.62 -51.93 -0.40 0.00 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 42 H 0.03 0.27 7.85 -51.93 -0.41 -0.14 16 43 H 0.06 0.57 7.49 -51.93 -0.39 0.18 16 44 H 0.08 1.02 7.82 -51.93 -0.41 0.62 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.38 1.79 9.08 45.56 0.41 2.20 16 51 H 0.09 1.64 6.40 -51.92 -0.33 1.30 16 52 H 0.05 0.57 7.55 -51.93 -0.39 0.18 16 LS Contribution 418.75 15.07 6.31 6.31 Total: -1.00 -34.84 418.75 -10.66 -45.50 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.68 Total: 2.28 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 0.21 Total: -7.60 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.88 Total: -42.79 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.39 Total: -16.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.84 -10.66 -45.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.579 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds