Wall clock time and date at job start Wed Apr 1 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47525 * 2 1 4 4 C 1.34771 * 119.99800 * 269.99820 * 3 2 1 5 5 O 1.21285 * 120.00037 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.00245 * 0.02562 * 4 3 2 7 7 S 1.81000 * 109.47200 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99608 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00427 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99879 * 180.02562 * 8 7 6 11 11 N 1.31629 * 119.99530 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00022 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47508 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47184 * 119.99959 * 12 10 8 15 15 H 1.48499 * 109.47103 * 239.99867 * 12 10 8 16 16 C 1.46503 * 120.00065 * 89.99521 * 3 2 1 17 17 H 1.09003 * 110.76356 * 356.80801 * 16 3 2 18 18 C 1.55138 * 110.70598 * 233.60350 * 16 3 2 19 19 C 1.54910 * 101.65178 * 205.96568 * 18 16 3 20 20 N 1.47848 * 104.79561 * 37.06877 * 19 18 16 21 21 C 1.46894 * 111.00001 * 213.63301 * 20 19 18 22 22 C 1.52997 * 109.47515 * 290.84537 * 21 20 19 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46886 * 180.02562 * 23 22 21 25 25 H 1.08994 * 109.47704 * 54.99481 * 24 23 22 26 26 C 1.53000 * 109.47194 * 175.00077 * 24 23 22 27 27 O 1.42908 * 109.46995 * 294.99566 * 24 23 22 28 28 C 1.47440 * 108.56650 * 335.90423 * 20 19 18 29 29 H 1.08998 * 109.47014 * 300.00065 * 1 2 3 30 30 H 1.09001 * 109.46735 * 60.00228 * 1 2 3 31 31 H 1.08995 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47354 * 239.99265 * 2 1 3 33 33 H 1.09004 * 109.47173 * 120.00022 * 2 1 3 34 34 H 1.09000 * 109.46575 * 300.00023 * 6 4 3 35 35 H 1.09005 * 109.46976 * 59.99210 * 6 4 3 36 36 H 0.97008 * 119.99679 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.98715 * 324.05500 * 18 16 3 38 38 H 1.08987 * 110.99330 * 87.87448 * 18 16 3 39 39 H 1.08997 * 110.37047 * 278.24221 * 19 18 16 40 40 H 1.08999 * 110.37129 * 155.89198 * 19 18 16 41 41 H 1.09002 * 109.47104 * 170.84269 * 21 20 19 42 42 H 1.08998 * 109.46828 * 50.85102 * 21 20 19 43 43 H 1.09002 * 109.47153 * 59.99762 * 22 21 20 44 44 H 1.09001 * 109.46832 * 299.99953 * 22 21 20 45 45 H 1.09001 * 109.47194 * 299.99650 * 23 22 21 46 46 H 1.08992 * 109.47399 * 59.99823 * 23 22 21 47 47 H 1.09004 * 109.47242 * 59.99175 * 26 24 23 48 48 H 1.09000 * 109.47237 * 179.97438 * 26 24 23 49 49 H 1.09002 * 109.46818 * 299.99696 * 26 24 23 50 50 H 0.96694 * 113.99717 * 180.02562 * 27 24 23 51 51 H 1.09009 * 109.88750 * 120.39258 * 28 20 19 52 52 H 1.08999 * 109.89065 * 241.57860 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0164 -1.1672 5 8 2.6470 3.1601 -1.1672 6 6 1.9914 1.3062 -2.4723 7 16 2.3830 2.4153 -3.8481 8 6 2.0097 1.3591 -5.2082 9 1 1.6545 0.3548 -5.0305 10 6 2.1722 1.8179 -6.5081 11 7 2.6055 3.0418 -6.7247 12 14 1.7758 0.6985 -7.9500 13 1 1.3094 -0.6167 -7.4421 14 1 0.7081 1.3160 -8.7771 15 1 2.9940 0.5066 -8.7771 16 6 2.2625 2.0718 1.2687 17 1 1.9796 1.4421 2.1122 18 6 1.5013 3.4229 1.3131 19 6 2.3698 4.2389 2.3029 20 7 3.7610 3.8374 2.0041 21 6 4.5820 3.8372 3.2222 22 6 4.7850 5.2761 3.7008 23 6 5.6407 5.2758 4.9692 24 6 5.8432 6.7147 5.4481 25 1 4.8731 7.1943 5.5783 26 6 6.5918 6.7076 6.7824 27 8 6.6051 7.4367 4.4783 28 6 3.7405 2.5016 1.3804 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.6212 0.4185 -2.5302 35 1 0.9432 1.0124 -2.5298 36 1 2.7187 3.3626 -7.6332 37 1 1.4833 3.8933 0.3300 38 1 0.4909 3.2893 1.6990 39 1 2.1139 3.9842 3.3313 40 1 2.2381 5.3073 2.1314 41 1 5.5505 3.3856 3.0075 42 1 4.0780 3.2633 3.9999 43 1 3.8165 5.7277 3.9155 44 1 5.2891 5.8499 2.9231 45 1 5.1370 4.7019 5.7471 46 1 6.6091 4.8244 4.7541 47 1 7.5620 6.2280 6.6521 48 1 6.7365 7.7327 7.1233 49 1 6.0107 6.1569 7.5221 50 1 6.7726 8.3587 4.7168 51 1 4.1889 2.5488 0.3880 52 1 4.2867 1.7931 2.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715037249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:26 Heat of formation + Delta-G solvation = -114.487833 kcal Electronic energy + Delta-G solvation = -28294.411244 eV Core-core repulsion = 24418.781239 eV Total energy + Delta-G solvation = -3875.630004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49808 -39.43940 -38.57012 -36.87185 -35.04330 -34.58794 -32.79040 -31.22246 -31.01014 -30.42968 -28.63636 -27.64518 -26.33733 -24.30691 -23.22773 -22.78928 -21.80725 -21.46312 -20.35201 -19.28353 -18.40109 -17.92229 -17.71756 -16.88748 -16.68247 -16.43973 -16.18807 -15.89242 -15.60167 -15.36654 -15.00141 -14.79037 -14.63816 -14.51217 -14.39622 -14.17531 -14.16376 -13.61363 -13.40618 -13.26943 -13.17825 -13.07967 -12.92920 -12.87718 -12.65782 -12.58577 -12.50189 -12.35162 -12.18127 -12.16665 -12.08763 -11.77621 -11.69456 -11.51857 -11.31624 -11.15821 -10.85946 -10.51212 -10.24213 -9.70337 -9.11830 -8.66012 -8.34796 -6.12548 1.26350 1.40513 1.45936 1.56947 1.65375 2.09855 2.27591 2.99114 3.01839 3.26602 3.44641 3.61092 3.62970 3.83273 3.89698 4.01769 4.07052 4.11651 4.16630 4.21559 4.26123 4.31467 4.35710 4.40801 4.48567 4.49491 4.55830 4.60204 4.61441 4.71788 4.79016 4.80713 4.87824 4.90352 4.96703 4.99809 5.01814 5.06833 5.10405 5.26137 5.27560 5.36961 5.37711 5.41259 5.47554 5.77870 6.04689 6.19520 6.24737 6.37448 6.93748 7.06264 7.25527 8.74648 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.002092 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.558749 B =13382.384977 C =14750.678618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.600 5.600 4 C 0.530 3.470 5 O -0.541 6.541 6 C -0.123 4.123 7 S -0.151 6.151 8 C -0.545 4.545 9 H 0.081 0.919 10 C 0.012 3.988 11 N -0.911 5.911 12 Si 0.999 3.001 13 H -0.256 1.256 14 H -0.274 1.274 15 H -0.274 1.274 16 C 0.136 3.864 17 H 0.132 0.868 18 C -0.148 4.148 19 C 0.058 3.942 20 N -0.549 5.549 21 C 0.056 3.944 22 C -0.104 4.104 23 C -0.109 4.109 24 C 0.095 3.905 25 H 0.060 0.940 26 C -0.181 4.181 27 O -0.590 6.590 28 C 0.042 3.958 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.271 0.729 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.390 0.610 51 H 0.045 0.955 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -3.250 30.469 30.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.334 5.334 4 C 0.317 3.683 5 O -0.418 6.418 6 C -0.274 4.274 7 S 0.076 5.924 8 C -0.693 4.693 9 H 0.099 0.901 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.821 3.179 13 H -0.179 1.179 14 H -0.199 1.199 15 H -0.199 1.199 16 C 0.032 3.968 17 H 0.149 0.851 18 C -0.186 4.186 19 C -0.069 4.069 20 N -0.274 5.274 21 C -0.072 4.072 22 C -0.142 4.142 23 C -0.147 4.147 24 C 0.037 3.963 25 H 0.078 0.922 26 C -0.238 4.238 27 O -0.399 6.399 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.239 0.761 51 H 0.064 0.936 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.687 -1.678 29.732 29.787 hybrid contribution -0.739 -1.359 -0.645 1.676 sum -0.051 -3.037 29.087 29.245 Atomic orbital electron populations 1.22184 0.95100 1.03377 1.01865 1.21893 0.95150 0.80449 1.04844 1.47923 1.66132 1.15198 1.04142 1.20021 0.76952 0.86151 0.85173 1.90713 1.44976 1.18833 1.87237 1.23417 1.05477 1.02996 0.95548 1.85599 1.87612 1.21923 0.97229 1.23226 1.51584 1.01728 0.92739 0.90070 1.26143 0.94200 0.97179 1.01709 1.70203 1.44306 1.17915 1.22376 0.84905 0.78107 0.78190 0.76743 1.17945 1.19890 1.19912 1.22392 0.94503 0.94037 0.85873 0.85053 1.23110 0.99150 0.95681 1.00698 1.22881 0.86516 0.99760 0.97783 1.63350 1.11704 1.25748 1.26577 1.22352 0.97310 0.97486 0.90051 1.21401 0.99782 0.95801 0.97223 1.21601 1.00288 0.95301 0.97489 1.21918 0.93831 0.92711 0.87876 0.92224 1.22468 1.01213 1.03104 0.97023 1.86554 1.76174 1.28806 1.48334 1.22992 0.96712 0.89473 0.99515 0.91626 0.94531 0.89313 0.90336 0.87037 0.88041 0.88063 0.92030 0.92238 0.89150 0.91021 0.91612 0.91685 0.92774 0.91951 0.93644 0.88681 0.92116 0.92599 0.91427 0.90417 0.76109 0.93645 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.24 71.98 0.74 -2.06 16 2 C 0.10 1.79 5.91 86.38 0.51 2.30 16 3 N -0.60 -15.97 2.54 -791.27 -2.01 -17.98 16 4 C 0.53 20.35 6.80 87.66 0.60 20.95 16 5 O -0.54 -25.55 12.22 -3.04 -0.04 -25.59 16 6 C -0.12 -5.12 4.71 71.24 0.34 -4.78 16 7 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 8 C -0.54 -31.80 9.50 67.96 0.65 -31.15 16 9 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 10 C 0.01 0.71 5.49 84.86 0.47 1.18 16 11 N -0.91 -57.14 13.22 21.65 0.29 -56.86 16 12 Si 1.00 44.36 29.55 68.60 2.03 46.39 16 13 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 C 0.14 3.11 3.43 46.17 0.16 3.27 16 17 H 0.13 1.92 7.90 -2.39 -0.02 1.90 16 18 C -0.15 -3.80 6.38 31.98 0.20 -3.59 16 19 C 0.06 1.34 5.78 86.77 0.50 1.84 16 20 N -0.55 -14.63 5.16 -885.55 -4.57 -19.20 16 21 C 0.06 1.12 4.56 86.30 0.39 1.51 16 22 C -0.10 -2.05 5.15 30.59 0.16 -1.89 16 23 C -0.11 -1.60 4.92 30.59 0.15 -1.45 16 24 C 0.10 1.29 3.58 30.59 0.11 1.40 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 C -0.18 -1.70 9.53 71.98 0.69 -1.02 16 27 O -0.59 -10.53 12.86 -148.98 -1.92 -12.44 16 28 C 0.04 1.12 6.13 86.65 0.53 1.65 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.54 6.44 -2.39 -0.02 1.52 16 33 H 0.11 1.27 7.98 -2.38 -0.02 1.25 16 34 H 0.10 3.87 7.40 -2.39 -0.02 3.85 16 35 H 0.10 3.89 7.18 -2.39 -0.02 3.87 16 36 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 37 H 0.06 2.16 5.69 -2.39 -0.01 2.15 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.19 7.62 -2.39 -0.02 1.18 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.37 8.03 -2.39 -0.02 1.35 16 42 H 0.05 0.82 7.85 -2.39 -0.02 0.80 16 43 H 0.06 1.16 7.49 -2.39 -0.02 1.14 16 44 H 0.04 1.21 7.82 -2.39 -0.02 1.19 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 49 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.39 3.71 9.08 -74.06 -0.67 3.03 16 51 H 0.05 1.66 6.40 -2.38 -0.02 1.65 16 52 H 0.07 1.54 7.55 -2.39 -0.02 1.52 16 Total: -1.00 -82.07 418.75 -0.98 -83.05 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.22 Total: 24.26 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 6.18 Total: -11.84 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -6.29 Total: -94.03 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.95 Total: -38.03 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -82.07 -0.98 -83.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715037249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.440 kcal (2) G-P(sol) polarization free energy of solvation -82.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds