Wall clock time and date at job start Wed Apr 1 2020 02:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 5 5 O 1.21273 * 120.00182 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.00009 * 0.02562 * 4 3 2 7 7 C 1.50697 * 109.47353 * 179.97438 * 6 4 3 8 8 C 1.38258 * 119.98162 * 89.99886 * 7 6 4 9 9 C 1.38289 * 120.04385 * 179.97438 * 8 7 6 10 10 C 1.37969 * 119.92160 * 0.02562 * 9 8 7 11 11 C 1.38594 * 120.03716 * 359.97438 * 10 9 8 12 12 C 1.37968 * 120.04040 * 359.72622 * 11 10 9 13 13 C 1.51075 * 107.27571 * 179.97438 * 11 10 9 14 14 O 1.43948 * 105.95517 * 17.69578 * 13 11 10 15 15 C 1.43944 * 104.94398 * 331.54958 * 14 13 11 16 16 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 17 17 H 1.08993 * 110.64535 * 1.68266 * 16 3 2 18 18 C 1.55161 * 110.71994 * 125.02485 * 16 3 2 19 19 C 1.54911 * 101.58089 * 153.86496 * 18 16 3 20 20 N 1.47418 * 104.83232 * 322.98533 * 19 18 16 21 21 C 1.36940 * 125.64896 * 204.16455 * 20 19 18 22 22 H 1.07998 * 119.99966 * 179.97438 * 21 20 19 23 23 C 1.38808 * 120.00009 * 359.96636 * 21 20 19 24 24 N 1.31614 * 120.00033 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00029 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46911 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47461 * 119.99718 * 25 23 21 28 28 H 1.48505 * 109.46804 * 239.99554 * 25 23 21 29 29 C 1.47023 * 108.70454 * 24.13402 * 20 19 18 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 35 35 H 1.09000 * 109.47328 * 300.00634 * 6 4 3 36 36 H 1.09009 * 109.47181 * 59.99924 * 6 4 3 37 37 H 1.08002 * 119.97256 * 359.97438 * 8 7 6 38 38 H 1.08007 * 120.03852 * 179.97438 * 9 8 7 39 39 H 1.08003 * 120.04413 * 180.27723 * 12 11 10 40 40 H 1.09008 * 110.15554 * 136.81618 * 13 11 10 41 41 H 1.09000 * 110.15625 * 258.49931 * 13 11 10 42 42 H 1.09000 * 110.15924 * 269.32182 * 15 14 13 43 43 H 1.09004 * 110.14950 * 147.56608 * 15 14 13 44 44 H 1.09001 * 110.99696 * 271.93420 * 18 16 3 45 45 H 1.08990 * 111.00800 * 35.78807 * 18 16 3 46 46 H 1.09003 * 110.36125 * 204.14537 * 19 18 16 47 47 H 1.08999 * 110.45918 * 81.87588 * 19 18 16 48 48 H 0.97003 * 120.00624 * 180.02562 * 24 23 21 49 49 H 1.09007 * 109.88329 * 239.52458 * 29 20 19 50 50 H 1.08997 * 109.88793 * 118.35634 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6477 3.1598 1.1672 6 6 1.9923 1.3061 2.4723 7 6 2.3191 2.2291 3.6178 8 6 1.3399 3.0516 4.1434 9 6 1.6383 3.8988 5.1949 10 6 2.9145 3.9227 5.7185 11 6 3.8962 3.0983 5.1917 12 6 3.5969 2.2486 4.1467 13 6 5.1647 3.3570 5.9702 14 8 4.7569 4.0149 7.1839 15 6 3.5477 4.7151 6.8383 16 6 2.2625 2.0718 -1.2687 17 1 2.0040 1.4305 -2.1112 18 6 1.4740 3.4068 -1.3277 19 6 2.3404 4.2367 -2.3077 20 7 3.7310 3.8645 -1.9900 21 6 4.8385 4.6315 -2.2358 22 1 5.8184 4.2679 -1.9639 23 6 4.7017 5.8764 -2.8345 24 7 3.5076 6.3193 -3.1664 25 14 6.2125 6.9224 -3.1704 26 1 7.4258 6.2026 -2.7068 27 1 6.3187 7.1849 -4.6281 28 1 6.0937 8.2114 -2.4426 29 6 3.7319 2.5338 -1.3650 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 0.9444 1.0114 2.5302 36 1 2.6228 0.4187 2.5299 37 1 0.3413 3.0323 3.7324 38 1 0.8734 4.5415 5.6051 39 1 4.3606 1.6029 3.7390 40 1 5.6617 2.4150 6.2024 41 1 5.8317 4.0018 5.3980 42 1 3.7817 5.7240 6.4987 43 1 2.8773 4.7532 7.6970 44 1 0.4720 3.2513 -1.7276 45 1 1.4324 3.8797 -0.3466 46 1 2.1855 5.3027 -2.1414 47 1 2.1041 3.9761 -3.3394 48 1 3.4119 7.1890 -3.5852 49 1 4.1679 2.5929 -0.3677 50 1 4.3004 1.8358 -1.9796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715042287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:46 Heat of formation + Delta-G solvation = -6.249005 kcal Electronic energy + Delta-G solvation = -30876.816984 eV Core-core repulsion = 26870.436616 eV Total energy + Delta-G solvation = -4006.380368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.84920 -40.01442 -37.76910 -36.58694 -35.47110 -32.99937 -32.17623 -31.58513 -30.29002 -29.34832 -28.74729 -27.58980 -26.59892 -24.62007 -24.10979 -23.31796 -21.83028 -21.47348 -20.44367 -20.06639 -18.42224 -16.95815 -16.88914 -16.63921 -16.51980 -16.28813 -15.87524 -15.29066 -14.74106 -14.59615 -14.34644 -14.20360 -13.92840 -13.84223 -13.63469 -13.26137 -13.14459 -12.99561 -12.69999 -12.64036 -12.36145 -12.12150 -11.97374 -11.91514 -11.70523 -11.48921 -11.36118 -11.19960 -10.96406 -10.90489 -10.78726 -10.69847 -10.42863 -10.19113 -10.00663 -9.74185 -9.47559 -9.10419 -8.88606 -8.54396 -8.50115 -8.27454 -6.68688 -5.53559 -2.93632 1.11992 1.28252 2.92626 3.13495 3.46611 3.51704 3.54393 3.61579 3.76753 4.06106 4.49131 4.59325 4.60935 4.68397 4.81576 4.85519 4.97871 5.10142 5.20495 5.21938 5.23254 5.28633 5.32927 5.35223 5.42380 5.47999 5.56053 5.58242 5.59940 5.65630 5.66437 5.79229 5.85329 5.94502 5.96550 6.06295 6.18582 6.21480 6.34918 6.44627 6.56375 6.60122 6.65294 6.69597 6.82189 6.84340 7.25267 7.59202 7.71764 7.74830 7.97802 8.48196 8.54588 9.33883 9.95270 10.60410 11.50551 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.003647 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.798509 B = 7676.079941 C =10061.234078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.608 5.608 4 C 0.506 3.494 5 O -0.496 6.496 6 C -0.102 4.102 7 C -0.054 4.054 8 C -0.099 4.099 9 C -0.091 4.091 10 C -0.136 4.136 11 C -0.130 4.130 12 C -0.077 4.077 13 C 0.091 3.909 14 O -0.364 6.364 15 C 0.092 3.908 16 C 0.136 3.864 17 H 0.086 0.914 18 C -0.155 4.155 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.213 4.213 22 H 0.075 0.925 23 C -0.013 4.013 24 N -0.923 5.923 25 Si 0.912 3.088 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.134 3.866 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.008 0.992 48 H 0.249 0.751 49 H 0.035 0.965 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -14.246 16.178 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.342 5.342 4 C 0.292 3.708 5 O -0.369 6.369 6 C -0.142 4.142 7 C -0.054 4.054 8 C -0.117 4.117 9 C -0.109 4.109 10 C -0.137 4.137 11 C -0.131 4.131 12 C -0.095 4.095 13 C 0.015 3.985 14 O -0.283 6.283 15 C 0.016 3.984 16 C 0.033 3.967 17 H 0.104 0.896 18 C -0.194 4.194 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.341 4.341 22 H 0.093 0.907 23 C -0.208 4.208 24 N -0.573 5.573 25 Si 0.743 3.257 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.007 3.993 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.026 0.974 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.978 -13.428 16.299 22.241 hybrid contribution 0.541 0.387 -0.648 0.929 sum -6.437 -13.041 15.650 21.364 Atomic orbital electron populations 1.22235 0.96079 1.01899 1.02776 1.21556 0.94356 0.83011 1.03029 1.48035 1.66374 1.13680 1.06127 1.20335 0.78669 0.87199 0.84574 1.90849 1.42460 1.16926 1.86703 1.20774 1.03996 0.98290 0.91131 1.19242 0.93525 0.97327 0.95349 1.20925 0.99346 0.95581 0.95813 1.20287 0.94859 0.99025 0.96725 1.20980 0.94826 0.98598 0.99263 1.20912 0.96177 0.98012 0.97968 1.20165 0.95898 0.98402 0.95008 1.21746 0.93707 0.98181 0.84860 1.89053 1.40907 1.67120 1.31189 1.21732 0.85936 0.94895 0.95862 1.22176 0.97427 0.93849 0.83266 0.89575 1.23420 0.97368 0.95677 1.02946 1.21827 0.81734 1.00841 0.92323 1.44291 1.03373 1.14294 1.70197 1.19096 0.85768 0.97084 1.32172 0.90707 1.24744 0.96873 0.97692 1.01507 1.69809 1.19951 1.19655 1.47867 0.86022 0.81833 0.80410 0.77417 1.20628 1.21859 1.21828 1.21471 0.92727 0.88407 0.96691 0.91755 0.91977 0.92560 0.90668 0.90317 0.88195 0.88280 0.85660 0.85768 0.85916 0.88610 0.90284 0.90479 0.88698 0.93132 0.89952 0.87655 0.97361 0.93968 0.94711 0.96790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.10 0.96 5.91 -4.04 -0.02 0.94 16 3 N -0.61 -8.61 2.54 -164.03 -0.42 -9.03 16 4 C 0.51 7.84 6.77 -10.98 -0.07 7.76 16 5 O -0.50 -10.43 12.38 5.56 0.07 -10.36 16 6 C -0.10 -1.10 4.38 -29.04 -0.13 -1.23 16 7 C -0.05 -0.68 4.38 -104.59 -0.46 -1.14 16 8 C -0.10 -1.20 9.70 -39.56 -0.38 -1.58 16 9 C -0.09 -1.07 10.04 -39.66 -0.40 -1.46 16 10 C -0.14 -1.69 6.32 -104.40 -0.66 -2.35 16 11 C -0.13 -1.68 6.32 -104.41 -0.66 -2.34 16 12 C -0.08 -0.98 9.70 -39.66 -0.38 -1.37 16 13 C 0.09 1.03 7.63 36.19 0.28 1.31 16 14 O -0.36 -4.48 11.72 -35.23 -0.41 -4.89 16 15 C 0.09 0.99 7.63 36.19 0.28 1.27 16 16 C 0.14 2.45 3.44 -66.09 -0.23 2.22 16 17 H 0.09 1.39 7.88 -51.93 -0.41 0.98 16 18 C -0.15 -3.20 6.40 -24.58 -0.16 -3.36 16 19 C 0.16 4.09 5.89 -2.53 -0.01 4.07 16 20 N -0.60 -16.32 3.39 -170.07 -0.58 -16.89 16 21 C -0.21 -6.31 10.27 -15.06 -0.15 -6.46 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 24 N -0.92 -28.20 10.09 55.49 0.56 -27.64 16 25 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 C 0.13 3.03 6.49 -3.06 -0.02 3.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.45 7.22 -51.93 -0.38 0.08 16 33 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 34 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 35 H 0.10 0.83 7.13 -51.93 -0.37 0.46 16 36 H 0.10 0.84 7.34 -51.92 -0.38 0.45 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.87 5.81 -51.93 -0.30 1.57 16 46 H 0.11 3.10 5.87 -51.93 -0.31 2.80 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 49 H 0.04 0.84 6.28 -51.93 -0.33 0.52 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -36.24 393.54 -10.61 -46.85 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.84 Total: 0.07 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.91 Total: -2.20 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.43 Total: -53.56 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.34 Total: -15.25 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.24 -10.61 -46.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715042287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.602 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds