Wall clock time and date at job start Wed Apr 1 2020 02:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 5 5 O 1.21273 * 120.00182 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.00009 * 0.02562 * 4 3 2 7 7 C 1.50697 * 109.47353 * 179.97438 * 6 4 3 8 8 C 1.38258 * 119.98162 * 89.99886 * 7 6 4 9 9 C 1.38289 * 120.04385 * 179.97438 * 8 7 6 10 10 C 1.37969 * 119.92160 * 0.02562 * 9 8 7 11 11 C 1.38594 * 120.03716 * 359.97438 * 10 9 8 12 12 C 1.37968 * 120.04040 * 359.72622 * 11 10 9 13 13 C 1.51075 * 107.27571 * 179.97438 * 11 10 9 14 14 O 1.43948 * 105.95517 * 17.69578 * 13 11 10 15 15 C 1.43944 * 104.94398 * 331.54958 * 14 13 11 16 16 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 17 17 H 1.08993 * 110.64535 * 1.68266 * 16 3 2 18 18 C 1.55161 * 110.71994 * 125.02485 * 16 3 2 19 19 C 1.54911 * 101.58089 * 153.86496 * 18 16 3 20 20 N 1.47418 * 104.83232 * 322.98533 * 19 18 16 21 21 C 1.36940 * 125.64896 * 204.16455 * 20 19 18 22 22 H 1.07998 * 119.99966 * 179.97438 * 21 20 19 23 23 C 1.38808 * 120.00009 * 359.96636 * 21 20 19 24 24 N 1.31614 * 120.00033 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00029 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46911 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47461 * 119.99718 * 25 23 21 28 28 H 1.48505 * 109.46804 * 239.99554 * 25 23 21 29 29 C 1.47023 * 108.70454 * 24.13402 * 20 19 18 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 35 35 H 1.09000 * 109.47328 * 300.00634 * 6 4 3 36 36 H 1.09009 * 109.47181 * 59.99924 * 6 4 3 37 37 H 1.08002 * 119.97256 * 359.97438 * 8 7 6 38 38 H 1.08007 * 120.03852 * 179.97438 * 9 8 7 39 39 H 1.08003 * 120.04413 * 180.27723 * 12 11 10 40 40 H 1.09008 * 110.15554 * 136.81618 * 13 11 10 41 41 H 1.09000 * 110.15625 * 258.49931 * 13 11 10 42 42 H 1.09000 * 110.15924 * 269.32182 * 15 14 13 43 43 H 1.09004 * 110.14950 * 147.56608 * 15 14 13 44 44 H 1.09001 * 110.99696 * 271.93420 * 18 16 3 45 45 H 1.08990 * 111.00800 * 35.78807 * 18 16 3 46 46 H 1.09003 * 110.36125 * 204.14537 * 19 18 16 47 47 H 1.08999 * 110.45918 * 81.87588 * 19 18 16 48 48 H 0.97003 * 120.00624 * 180.02562 * 24 23 21 49 49 H 1.09007 * 109.88329 * 239.52458 * 29 20 19 50 50 H 1.08997 * 109.88793 * 118.35634 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6477 3.1598 1.1672 6 6 1.9923 1.3061 2.4723 7 6 2.3191 2.2291 3.6178 8 6 1.3399 3.0516 4.1434 9 6 1.6383 3.8988 5.1949 10 6 2.9145 3.9227 5.7185 11 6 3.8962 3.0983 5.1917 12 6 3.5969 2.2486 4.1467 13 6 5.1647 3.3570 5.9702 14 8 4.7569 4.0149 7.1839 15 6 3.5477 4.7151 6.8383 16 6 2.2625 2.0718 -1.2687 17 1 2.0040 1.4305 -2.1112 18 6 1.4740 3.4068 -1.3277 19 6 2.3404 4.2367 -2.3077 20 7 3.7310 3.8645 -1.9900 21 6 4.8385 4.6315 -2.2358 22 1 5.8184 4.2679 -1.9639 23 6 4.7017 5.8764 -2.8345 24 7 3.5076 6.3193 -3.1664 25 14 6.2125 6.9224 -3.1704 26 1 7.4258 6.2026 -2.7068 27 1 6.3187 7.1849 -4.6281 28 1 6.0937 8.2114 -2.4426 29 6 3.7319 2.5338 -1.3650 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 0.9444 1.0114 2.5302 36 1 2.6228 0.4187 2.5299 37 1 0.3413 3.0323 3.7324 38 1 0.8734 4.5415 5.6051 39 1 4.3606 1.6029 3.7390 40 1 5.6617 2.4150 6.2024 41 1 5.8317 4.0018 5.3980 42 1 3.7817 5.7240 6.4987 43 1 2.8773 4.7532 7.6970 44 1 0.4720 3.2513 -1.7276 45 1 1.4324 3.8797 -0.3466 46 1 2.1855 5.3027 -2.1414 47 1 2.1041 3.9761 -3.3394 48 1 3.4119 7.1890 -3.5852 49 1 4.1679 2.5929 -0.3677 50 1 4.3004 1.8358 -1.9796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715042287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:44 Heat of formation + Delta-G solvation = -28.845200 kcal Electronic energy + Delta-G solvation = -30877.796828 eV Core-core repulsion = 26870.436616 eV Total energy + Delta-G solvation = -4007.360212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.79221 -41.19728 -38.91038 -38.07839 -36.69410 -34.49115 -33.61427 -32.47568 -31.58995 -30.75929 -30.04203 -28.80603 -27.95556 -26.42417 -25.22472 -24.14582 -22.71961 -22.70157 -22.07906 -21.61317 -19.61878 -18.95050 -17.99488 -17.62308 -17.40444 -17.34793 -16.97759 -16.72020 -16.32934 -15.86916 -15.76950 -15.36973 -15.22566 -14.76590 -14.71403 -14.50361 -14.30971 -14.12347 -13.89498 -13.60006 -13.49697 -13.41780 -13.39812 -13.01883 -12.96859 -12.85671 -12.77293 -12.69713 -12.30417 -12.25822 -12.11310 -12.01123 -11.96289 -11.83171 -11.76692 -11.36040 -11.09149 -10.76278 -10.44240 -9.81038 -9.53471 -9.41721 -8.86724 -7.78110 -5.21552 0.20000 0.37038 1.41053 1.43820 1.53591 1.78430 2.03744 2.48251 2.68949 2.91250 3.18825 3.30765 3.63164 3.67818 3.76012 3.79343 3.93604 3.96531 4.14884 4.16003 4.22355 4.30046 4.36406 4.37510 4.41977 4.47621 4.52605 4.57583 4.59312 4.64035 4.71788 4.73660 4.75211 4.90161 4.93507 5.01639 5.04149 5.07826 5.09620 5.18442 5.29414 5.31697 5.41576 5.47960 5.54793 5.64646 5.67548 5.78658 5.83727 5.96202 6.29975 6.58979 7.09862 7.39767 7.78122 8.42012 9.23840 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.003647 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.798509 B = 7676.079941 C =10061.234078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.501 3.499 5 O -0.561 6.561 6 C -0.089 4.089 7 C -0.068 4.068 8 C -0.111 4.111 9 C -0.100 4.100 10 C -0.152 4.152 11 C -0.151 4.151 12 C -0.093 4.093 13 C 0.090 3.910 14 O -0.378 6.378 15 C 0.090 3.910 16 C 0.154 3.846 17 H 0.114 0.886 18 C -0.138 4.138 19 C 0.161 3.839 20 N -0.619 5.619 21 C -0.236 4.236 22 H 0.073 0.927 23 C -0.068 4.068 24 N -0.949 5.949 25 Si 0.979 3.021 26 H -0.269 1.269 27 H -0.285 1.285 28 H -0.293 1.293 29 C 0.132 3.868 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.063 0.937 47 H -0.006 1.006 48 H 0.246 0.754 49 H 0.016 0.984 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -16.779 17.010 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.290 3.710 5 O -0.439 6.439 6 C -0.128 4.128 7 C -0.068 4.068 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.152 4.152 11 C -0.151 4.151 12 C -0.111 4.111 13 C 0.014 3.986 14 O -0.296 6.296 15 C 0.014 3.986 16 C 0.050 3.950 17 H 0.132 0.868 18 C -0.177 4.177 19 C 0.036 3.964 20 N -0.344 5.344 21 C -0.365 4.365 22 H 0.091 0.909 23 C -0.260 4.260 24 N -0.599 5.599 25 Si 0.808 3.192 26 H -0.193 1.193 27 H -0.212 1.212 28 H -0.220 1.220 29 C 0.006 3.994 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.012 0.988 48 H 0.056 0.944 49 H 0.034 0.966 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.843 -16.041 17.145 24.754 hybrid contribution 0.795 1.159 -0.892 1.665 sum -7.048 -14.882 16.253 23.137 Atomic orbital electron populations 1.22204 0.94844 1.03458 1.02086 1.21966 0.95291 0.79999 1.05240 1.48095 1.65782 1.15408 1.04272 1.21177 0.77079 0.86575 0.86156 1.90834 1.45424 1.19972 1.87690 1.20793 1.06582 0.98088 0.87344 1.19522 0.93509 0.97918 0.95865 1.21256 1.00200 0.95487 0.95935 1.20624 0.95258 0.99196 0.96674 1.21300 0.95217 0.98855 0.99842 1.21209 0.96996 0.98466 0.98437 1.20419 0.96530 0.98889 0.95294 1.21823 0.93322 0.98907 0.84529 1.89024 1.41564 1.67407 1.31649 1.21871 0.85760 0.94554 0.96380 1.21848 0.93417 0.93397 0.86351 0.86770 1.23151 0.98124 0.96221 1.00236 1.21579 0.82529 0.99419 0.92910 1.44588 1.03325 1.16112 1.70420 1.19433 0.86683 0.98010 1.32348 0.90917 1.25619 0.99917 0.98852 1.01633 1.70078 1.21828 1.19690 1.48318 0.84991 0.78745 0.78257 0.77246 1.19332 1.21180 1.22001 1.21611 0.96185 0.86537 0.95092 0.89044 0.93554 0.92431 0.87561 0.89135 0.84962 0.85283 0.84073 0.83616 0.85096 0.86774 0.90640 0.90236 0.86468 0.90210 0.92125 0.91884 0.98818 0.94406 0.96612 0.96120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 71.98 0.74 -1.22 16 2 C 0.10 1.35 5.91 86.38 0.51 1.86 16 3 N -0.60 -15.57 2.54 -791.26 -2.01 -17.58 16 4 C 0.50 14.75 6.77 87.66 0.59 15.35 16 5 O -0.56 -23.95 12.38 -3.01 -0.04 -23.99 16 6 C -0.09 -1.65 4.38 29.10 0.13 -1.52 16 7 C -0.07 -1.61 4.38 -19.85 -0.09 -1.70 16 8 C -0.11 -2.56 9.70 22.29 0.22 -2.34 16 9 C -0.10 -2.26 10.04 22.22 0.22 -2.03 16 10 C -0.15 -3.71 6.32 -19.72 -0.12 -3.84 16 11 C -0.15 -3.87 6.32 -19.72 -0.12 -3.99 16 12 C -0.09 -2.35 9.70 22.22 0.22 -2.13 16 13 C 0.09 2.04 7.63 71.35 0.54 2.58 16 14 O -0.38 -9.13 11.72 -148.98 -1.75 -10.88 16 15 C 0.09 1.89 7.63 71.36 0.54 2.44 16 16 C 0.15 5.35 3.44 46.18 0.16 5.50 16 17 H 0.11 3.35 7.88 -2.39 -0.02 3.33 16 18 C -0.14 -5.71 6.40 31.99 0.20 -5.50 16 19 C 0.16 8.63 5.89 86.86 0.51 9.14 16 20 N -0.62 -34.94 3.39 -691.99 -2.35 -37.29 16 21 C -0.24 -14.42 10.27 84.03 0.86 -13.55 16 22 H 0.07 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 24 N -0.95 -60.11 10.09 21.65 0.22 -59.89 16 25 Si 0.98 48.73 29.55 68.60 2.03 50.76 16 26 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 29 C 0.13 6.00 6.49 86.73 0.56 6.56 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.67 7.22 -2.38 -0.02 0.65 16 33 H 0.11 0.89 6.44 -2.39 -0.02 0.88 16 34 H 0.09 1.12 7.96 -2.39 -0.02 1.10 16 35 H 0.13 1.61 7.13 -2.39 -0.02 1.59 16 36 H 0.13 1.63 7.34 -2.38 -0.02 1.61 16 37 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.06 2.82 5.81 -2.39 -0.01 2.80 16 46 H 0.06 3.92 5.87 -2.39 -0.01 3.90 16 47 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 49 H 0.02 0.78 6.28 -2.38 -0.01 0.77 16 50 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -84.17 393.54 3.18 -80.98 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.93 Total: 15.95 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.14 Total: 1.93 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.14 Total: -114.76 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.78 Total: -34.87 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.03 Total: 50.76 kcal Total: -84.17 3.18 -80.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715042287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.139 kcal (2) G-P(sol) polarization free energy of solvation -84.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds