Wall clock time and date at job start Wed Apr 1 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.46907 * 2 1 4 4 C 1.34775 * 120.00103 * 275.12334 * 3 2 1 5 5 O 1.21275 * 120.00214 * 185.18433 * 4 3 2 6 6 C 1.50702 * 119.99789 * 5.19407 * 4 3 2 7 7 C 1.50706 * 109.46933 * 179.97438 * 6 4 3 8 8 C 1.38257 * 119.97617 * 269.71762 * 7 6 4 9 9 C 1.38295 * 120.04327 * 179.78763 * 8 7 6 10 10 C 1.37963 * 119.91489 * 0.47108 * 9 8 7 11 11 C 1.38605 * 120.04098 * 359.78338 * 10 9 8 12 12 C 1.37967 * 120.03573 * 359.97438 * 11 10 9 13 13 C 1.51088 * 107.27349 * 179.97438 * 11 10 9 14 14 O 1.43946 * 105.95600 * 17.68497 * 13 11 10 15 15 C 1.43944 * 104.95083 * 331.56021 * 14 13 11 16 16 C 1.46499 * 119.99966 * 95.12981 * 3 2 1 17 17 H 1.09003 * 110.88813 * 190.36556 * 16 3 2 18 18 C 1.55153 * 111.00648 * 66.48634 * 16 3 2 19 19 C 1.54330 * 102.94284 * 277.42642 * 18 16 3 20 20 N 1.47024 * 107.26728 * 337.80960 * 19 18 16 21 21 C 1.36943 * 125.64620 * 178.98649 * 20 19 18 22 22 H 1.07997 * 120.00039 * 179.97438 * 21 20 19 23 23 C 1.38814 * 119.99785 * 359.97265 * 21 20 19 24 24 N 1.31623 * 120.00072 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99747 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46884 * 60.00256 * 25 23 21 27 27 H 1.48504 * 109.47006 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47107 * 300.00128 * 25 23 21 29 29 C 1.47419 * 108.70525 * 358.93599 * 20 19 18 30 30 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47490 * 300.00299 * 1 2 3 32 32 H 1.09006 * 109.47618 * 60.00203 * 1 2 3 33 33 H 1.08998 * 109.47490 * 239.99701 * 2 1 3 34 34 H 1.09002 * 109.46930 * 119.99590 * 2 1 3 35 35 H 1.09004 * 109.46405 * 299.98926 * 6 4 3 36 36 H 1.08992 * 109.47354 * 59.99110 * 6 4 3 37 37 H 1.08006 * 119.98278 * 0.02562 * 8 7 6 38 38 H 1.07999 * 120.04593 * 180.25529 * 9 8 7 39 39 H 1.08001 * 120.03674 * 180.02562 * 12 11 10 40 40 H 1.08991 * 110.14986 * 136.80859 * 13 11 10 41 41 H 1.09001 * 110.15144 * 258.49617 * 13 11 10 42 42 H 1.08996 * 110.15648 * 147.56554 * 15 14 13 43 43 H 1.09001 * 110.15039 * 269.31839 * 15 14 13 44 44 H 1.08994 * 110.72421 * 35.79079 * 18 16 3 45 45 H 1.09004 * 110.72267 * 159.06634 * 18 16 3 46 46 H 1.09001 * 109.87776 * 97.22284 * 19 18 16 47 47 H 1.08999 * 109.88334 * 218.23899 * 19 18 16 48 48 H 0.97004 * 119.99602 * 180.02562 * 24 23 21 49 49 H 1.08997 * 110.36734 * 265.28967 * 29 20 19 50 50 H 1.09004 * 110.36900 * 142.97045 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1445 2.0513 -1.1625 5 8 2.6364 3.1598 -1.1731 6 6 1.6743 1.4233 -2.4492 7 6 1.9268 2.3718 -3.5928 8 6 0.9559 3.2850 -3.9600 9 6 1.1878 4.1590 -5.0063 10 6 2.3854 4.1120 -5.6896 11 6 3.3566 3.1929 -5.3249 12 6 3.1271 2.3244 -4.2778 13 6 4.5328 3.3913 -6.2523 14 8 4.3564 4.6924 -6.8423 15 6 2.9329 4.9053 -6.8530 16 6 2.3693 2.0340 1.2636 17 1 2.5373 3.1009 1.1164 18 6 3.6073 1.3605 1.9124 19 6 2.9969 0.1458 2.6428 20 7 1.5745 0.4416 2.8681 21 6 0.6717 -0.3928 3.4716 22 1 -0.3555 -0.0814 3.5907 23 6 1.0769 -1.6388 3.9300 24 7 2.3289 -2.0181 3.7852 25 14 -0.1545 -2.7766 4.7538 26 1 -1.2556 -3.0838 3.8059 27 1 0.5238 -4.0372 5.1490 28 1 -0.7106 -2.1137 5.9606 29 6 1.2813 1.7855 2.3380 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 2.2187 0.4945 -2.6201 36 1 0.6072 1.2119 -2.3816 37 1 0.0172 3.3186 -3.4268 38 1 0.4310 4.8752 -5.2905 39 1 3.8841 1.6085 -3.9933 40 1 5.4651 3.3578 -5.6887 41 1 4.5344 2.6238 -7.0263 42 1 2.7106 5.9644 -6.7231 43 1 2.5060 4.5434 -7.7884 44 1 4.3143 1.0361 1.1489 45 1 4.0866 2.0358 2.6213 46 1 3.0966 -0.7467 2.0250 47 1 3.5021 -0.0055 3.5967 48 1 2.6120 -2.8890 4.1053 49 1 1.3539 2.5301 3.1307 50 1 0.2897 1.8071 1.8858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715042301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:47 Heat of formation + Delta-G solvation = -21.111037 kcal Electronic energy + Delta-G solvation = -30803.617004 eV Core-core repulsion = 26796.592170 eV Total energy + Delta-G solvation = -4007.024834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77876 -41.21066 -39.29332 -38.24003 -36.09727 -34.41124 -33.57770 -32.45968 -31.82994 -30.49441 -30.02754 -29.01281 -28.07816 -26.34143 -25.25665 -24.04998 -22.68239 -22.67132 -21.91166 -21.40887 -19.77024 -18.83903 -18.35863 -17.66300 -17.37235 -17.20285 -16.99484 -16.64755 -16.47529 -15.87828 -15.61982 -15.41051 -15.20973 -14.88895 -14.63025 -14.43678 -14.12077 -13.98132 -13.73365 -13.72165 -13.62024 -13.45723 -13.33215 -13.00339 -12.92194 -12.82010 -12.78656 -12.60243 -12.33293 -12.22180 -12.05686 -11.97014 -11.82921 -11.79202 -11.49193 -11.35665 -11.06688 -10.69364 -10.60955 -9.80144 -9.58442 -9.40613 -8.80090 -7.77706 -5.11420 0.20846 0.38071 1.51012 1.52310 1.58020 1.66102 2.06282 2.54177 2.69438 2.95536 3.20660 3.42447 3.63090 3.65494 3.72903 3.81074 3.93827 3.98343 4.08575 4.19505 4.22546 4.33076 4.37888 4.41965 4.45739 4.50965 4.56961 4.58704 4.60867 4.63161 4.72431 4.75899 4.82578 4.87555 4.95126 4.98749 5.06847 5.07799 5.10838 5.28035 5.31843 5.34287 5.54072 5.56030 5.57785 5.66917 5.71588 5.76295 5.84605 5.96919 6.23725 6.58796 7.16600 7.23446 7.82488 8.47790 9.32136 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025269 B = 0.002363 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.833031 B =11844.736948 C =12115.440200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 N -0.586 5.586 4 C 0.514 3.486 5 O -0.580 6.580 6 C -0.095 4.095 7 C -0.067 4.067 8 C -0.111 4.111 9 C -0.096 4.096 10 C -0.149 4.149 11 C -0.148 4.148 12 C -0.093 4.093 13 C 0.091 3.909 14 O -0.383 6.383 15 C 0.091 3.909 16 C 0.135 3.865 17 H 0.099 0.901 18 C -0.143 4.143 19 C 0.190 3.810 20 N -0.609 5.609 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.057 4.057 24 N -0.948 5.948 25 Si 0.966 3.034 26 H -0.275 1.275 27 H -0.300 1.300 28 H -0.286 1.286 29 C 0.125 3.875 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.029 0.971 47 H 0.003 0.997 48 H 0.245 0.755 49 H 0.031 0.969 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 8.159 -20.739 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.317 5.317 4 C 0.304 3.696 5 O -0.461 6.461 6 C -0.134 4.134 7 C -0.067 4.067 8 C -0.129 4.129 9 C -0.114 4.114 10 C -0.150 4.150 11 C -0.148 4.148 12 C -0.111 4.111 13 C 0.015 3.985 14 O -0.302 6.302 15 C 0.015 3.985 16 C 0.030 3.970 17 H 0.117 0.883 18 C -0.183 4.183 19 C 0.065 3.935 20 N -0.336 5.336 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.250 4.250 24 N -0.597 5.597 25 Si 0.796 3.204 26 H -0.201 1.201 27 H -0.227 1.227 28 H -0.212 1.212 29 C -0.001 4.001 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.047 0.953 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.435 8.669 -20.722 22.508 hybrid contribution -0.484 -1.073 1.319 1.767 sum -1.919 7.596 -19.403 20.925 Atomic orbital electron populations 1.22093 0.95203 1.02179 1.01601 1.21935 0.95434 0.81255 1.04416 1.47897 1.63909 1.14615 1.05257 1.20992 0.77778 0.85212 0.85582 1.90667 1.46294 1.21907 1.87199 1.20793 1.05388 0.98799 0.88416 1.19448 0.94319 0.97326 0.95648 1.21242 0.99806 0.94797 0.97056 1.20608 0.96330 0.99342 0.95120 1.21319 0.95781 0.98940 0.98929 1.21201 0.97997 0.97760 0.97871 1.20382 0.96930 0.99311 0.94474 1.21847 0.96521 0.85692 0.94437 1.89044 1.23261 1.35345 1.82598 1.21895 0.80183 1.00901 0.95496 1.22014 0.94719 0.96952 0.83342 0.88334 1.23132 0.97110 0.98540 0.99492 1.20906 0.83657 0.93196 0.95749 1.44631 1.06157 1.13935 1.68827 1.19201 0.91017 0.95264 1.29661 0.90272 1.25408 0.97765 0.99252 1.02589 1.70142 1.16031 1.20622 1.52949 0.85336 0.78408 0.78089 0.78577 1.20102 1.22707 1.21243 1.22025 0.97117 0.87422 0.93559 0.91937 0.93423 0.91505 0.89680 0.89041 0.86127 0.85711 0.84309 0.83384 0.85181 0.88129 0.88711 0.87434 0.88678 0.91180 0.90526 0.95316 0.97835 0.94596 0.95165 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 9.99 71.98 0.72 -3.61 16 2 C 0.09 2.81 5.04 86.38 0.44 3.24 16 3 N -0.59 -18.30 2.52 -790.15 -1.99 -20.29 16 4 C 0.51 15.27 7.62 87.66 0.67 15.94 16 5 O -0.58 -21.34 15.47 -3.01 -0.05 -21.39 16 6 C -0.09 -2.01 4.51 29.10 0.13 -1.88 16 7 C -0.07 -1.52 4.38 -19.85 -0.09 -1.60 16 8 C -0.11 -2.32 9.70 22.29 0.22 -2.11 16 9 C -0.10 -1.83 10.04 22.22 0.22 -1.61 16 10 C -0.15 -3.03 6.32 -19.72 -0.12 -3.16 16 11 C -0.15 -3.22 6.32 -19.72 -0.12 -3.34 16 12 C -0.09 -2.10 9.70 22.22 0.22 -1.89 16 13 C 0.09 1.67 7.63 71.36 0.54 2.21 16 14 O -0.38 -8.10 11.72 -148.98 -1.75 -9.85 16 15 C 0.09 1.51 7.63 71.36 0.54 2.05 16 16 C 0.13 4.70 3.61 46.38 0.17 4.86 16 17 H 0.10 3.45 7.12 -2.39 -0.02 3.43 16 18 C -0.14 -5.27 6.56 31.78 0.21 -5.07 16 19 C 0.19 8.69 4.30 86.73 0.37 9.06 16 20 N -0.61 -28.04 2.19 -691.98 -1.52 -29.56 16 21 C -0.22 -11.28 10.28 84.03 0.86 -10.41 16 22 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 23 C -0.06 -3.00 5.49 84.86 0.47 -2.53 16 24 N -0.95 -53.21 10.31 21.65 0.22 -52.99 16 25 Si 0.97 43.27 29.55 68.60 2.03 45.30 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 29 C 0.12 4.79 6.05 86.86 0.53 5.32 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.59 5.62 -2.39 -0.01 1.58 16 32 H 0.07 1.47 6.32 -2.38 -0.02 1.45 16 33 H 0.09 2.10 6.70 -2.39 -0.02 2.09 16 34 H 0.09 3.66 3.73 -2.39 -0.01 3.65 16 35 H 0.12 2.11 7.22 -2.39 -0.02 2.09 16 36 H 0.12 2.15 6.30 -2.39 -0.02 2.14 16 37 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 46 H 0.03 1.44 5.81 -2.39 -0.01 1.43 16 47 H 0.00 0.18 7.50 -2.39 -0.02 0.16 16 48 H 0.24 13.63 8.31 -92.70 -0.77 12.86 16 49 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.05 2.05 6.00 -2.38 -0.01 2.04 16 Total: -1.00 -65.99 386.05 3.87 -62.12 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.95 Total: 21.16 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.97 Total: 5.49 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.28 Total: -102.83 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.79 Total: -31.24 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -65.99 3.87 -62.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715042301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.008 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds