Wall clock time and date at job start Wed Apr 1 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 5 5 O 1.21279 * 120.00472 * 179.97438 * 4 3 2 6 6 C 1.50706 * 120.00020 * 0.02562 * 4 3 2 7 7 C 1.52997 * 109.47238 * 180.02562 * 6 4 3 8 8 H 1.08997 * 110.13146 * 304.75470 * 7 6 4 9 9 O 1.43942 * 110.15520 * 66.45336 * 7 6 4 10 10 C 1.43939 * 104.95465 * 90.67911 * 9 7 6 11 11 C 1.51089 * 105.95343 * 28.44165 * 10 9 7 12 12 C 1.37961 * 132.68570 * 162.28706 * 11 10 9 13 13 C 1.38294 * 119.91736 * 180.02562 * 12 11 10 14 14 C 1.38260 * 120.04399 * 359.97438 * 13 12 11 15 15 C 1.38295 * 120.04071 * 0.03015 * 14 13 12 16 16 C 1.37973 * 119.91865 * 359.94889 * 15 14 13 17 17 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 18 18 H 1.09005 * 110.88532 * 356.12586 * 17 3 2 19 19 C 1.55159 * 111.00623 * 119.99809 * 17 3 2 20 20 C 1.54325 * 102.94170 * 153.58099 * 19 17 3 21 21 N 1.47023 * 107.27072 * 337.80601 * 20 19 17 22 22 C 1.36940 * 125.64562 * 178.98455 * 21 20 19 23 23 H 1.07993 * 119.99526 * 179.97438 * 22 21 20 24 24 C 1.38810 * 120.00334 * 359.97438 * 22 21 20 25 25 N 1.31626 * 119.99504 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00384 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46769 * 89.99765 * 26 24 22 28 28 H 1.48501 * 109.47320 * 210.00187 * 26 24 22 29 29 H 1.48506 * 109.47094 * 330.00485 * 26 24 22 30 30 C 1.47423 * 108.70337 * 358.94727 * 21 20 19 31 31 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 33 33 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 34 34 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 35 35 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 36 36 H 1.09001 * 109.46953 * 299.99667 * 6 4 3 37 37 H 1.09000 * 109.47318 * 59.99264 * 6 4 3 38 38 H 1.09003 * 110.15516 * 147.56455 * 10 9 7 39 39 H 1.08999 * 110.15291 * 269.32457 * 10 9 7 40 40 H 1.08000 * 120.04243 * 0.04726 * 12 11 10 41 41 H 1.08001 * 119.97525 * 180.02562 * 13 12 11 42 42 H 1.07995 * 119.98327 * 180.02562 * 14 13 12 43 43 H 1.07994 * 120.04048 * 179.97438 * 15 14 13 44 44 H 1.09001 * 110.72039 * 271.94115 * 19 17 3 45 45 H 1.08996 * 110.71723 * 35.21697 * 19 17 3 46 46 H 1.09004 * 109.88221 * 97.22764 * 20 19 17 47 47 H 1.09001 * 109.88185 * 218.23742 * 20 19 17 48 48 H 0.97002 * 119.99808 * 179.97438 * 25 24 22 49 49 H 1.09008 * 110.36130 * 265.28525 * 30 21 20 50 50 H 1.09004 * 110.36621 * 142.96734 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.6477 3.1597 1.1673 6 6 1.9925 1.3058 2.4723 7 6 2.3232 2.2433 3.6353 8 1 3.3447 2.6118 3.5413 9 8 1.3986 3.3462 3.6616 10 6 0.3216 2.9079 4.5100 11 6 0.9322 1.9258 5.4823 12 6 0.5069 1.4223 6.6943 13 6 1.2944 0.5146 7.3787 14 6 2.5061 0.1117 6.8488 15 6 2.9326 0.6164 5.6339 16 6 2.1468 1.5217 4.9508 17 6 2.2625 2.0719 -1.2686 18 1 2.0988 1.4026 -2.1133 19 6 1.3815 3.3436 -1.3880 20 6 2.2021 4.2449 -2.3345 21 7 3.5994 3.7929 -2.2651 22 6 4.6454 4.3219 -2.9732 23 1 5.6394 3.9178 -2.8509 24 6 4.4281 5.3774 -3.8481 25 7 3.2164 5.8696 -3.9974 26 14 5.8549 6.0995 -4.8134 27 1 5.9915 5.3815 -6.1062 28 1 5.5998 7.5395 -5.0714 29 1 7.1079 5.9513 -4.0302 30 6 3.6881 2.6765 -1.3064 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 0.9446 1.0112 2.5303 37 1 2.6229 0.4185 2.5298 38 1 -0.1013 3.7560 5.0485 39 1 -0.4492 2.4176 3.9153 40 1 -0.4400 1.7364 7.1080 41 1 0.9621 0.1195 8.3274 42 1 3.1201 -0.5976 7.3838 43 1 3.8793 0.3020 5.2201 44 1 0.4138 3.1024 -1.8280 45 1 1.2564 3.8187 -0.4151 46 1 1.8308 4.1465 -3.3546 47 1 2.1297 5.2837 -2.0124 48 1 3.0645 6.6074 -4.6085 49 1 3.9701 3.0452 -0.3200 50 1 4.4062 1.9339 -1.6542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715042931.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:51 Heat of formation + Delta-G solvation = -4.525398 kcal Electronic energy + Delta-G solvation = -30973.664393 eV Core-core repulsion = 26967.358766 eV Total energy + Delta-G solvation = -4006.305626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.18875 -39.82468 -37.64444 -36.60468 -35.43928 -32.75188 -32.13403 -31.55056 -30.32259 -30.25644 -28.86109 -27.30853 -26.36632 -24.59259 -24.05036 -23.21798 -21.82082 -21.55021 -20.56944 -19.92424 -18.51668 -17.14921 -16.90214 -16.74597 -16.63528 -16.07396 -15.73290 -15.44456 -14.88679 -14.53057 -14.35554 -14.10068 -13.87532 -13.80684 -13.60571 -13.32982 -13.25672 -13.02415 -12.78187 -12.62789 -12.20918 -12.12460 -12.10520 -11.82419 -11.76423 -11.61485 -11.51281 -11.17024 -11.09796 -10.80228 -10.76702 -10.53414 -10.16839 -10.14191 -9.99278 -9.79814 -9.54209 -9.25806 -9.01122 -8.80998 -8.48879 -8.21977 -6.62856 -5.56928 -2.88990 0.89469 0.99259 2.96077 3.15565 3.36223 3.48406 3.53103 3.55746 3.79596 3.91994 4.32588 4.59305 4.62241 4.66328 4.67833 4.80191 4.91900 4.94529 5.09230 5.11370 5.16237 5.23107 5.23849 5.32334 5.39687 5.54460 5.56484 5.61124 5.63955 5.68190 5.70147 5.73011 5.79027 5.92733 6.00764 6.02471 6.10055 6.11074 6.13285 6.34521 6.54776 6.61324 6.68158 6.70529 6.80135 6.85991 7.35357 7.68389 7.75107 7.82973 7.97977 8.40616 8.57967 9.36620 9.97301 10.64881 11.54869 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.002580 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.675798 B =10850.404342 C =11356.526283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.607 5.607 4 C 0.511 3.489 5 O -0.500 6.500 6 C -0.154 4.154 7 C 0.137 3.863 8 H 0.113 0.887 9 O -0.329 6.329 10 C 0.081 3.919 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.116 4.116 14 C -0.117 4.117 15 C -0.091 4.091 16 C -0.122 4.122 17 C 0.132 3.868 18 H 0.088 0.912 19 C -0.152 4.152 20 C 0.186 3.814 21 N -0.602 5.602 22 C -0.220 4.220 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.923 5.923 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.124 3.876 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.250 0.750 49 H 0.050 0.950 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 -17.461 21.413 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.341 5.341 4 C 0.297 3.703 5 O -0.374 6.374 6 C -0.194 4.194 7 C 0.079 3.921 8 H 0.131 0.869 9 O -0.247 6.247 10 C 0.005 3.995 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.134 4.134 14 C -0.135 4.135 15 C -0.109 4.109 16 C -0.122 4.122 17 C 0.029 3.971 18 H 0.106 0.894 19 C -0.191 4.191 20 C 0.061 3.939 21 N -0.329 5.329 22 C -0.349 4.349 23 H 0.094 0.906 24 C -0.207 4.207 25 N -0.571 5.571 26 Si 0.742 3.258 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.208 1.208 30 C -0.003 4.003 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.122 -16.437 21.129 27.975 hybrid contribution 0.499 -0.002 -0.456 0.676 sum -7.623 -16.439 20.673 27.491 Atomic orbital electron populations 1.22230 0.96157 1.01808 1.02767 1.21534 0.94333 0.83056 1.02900 1.47987 1.66243 1.13647 1.06221 1.20235 0.78392 0.87005 0.84644 1.90791 1.43026 1.16902 1.86655 1.22188 1.04201 0.99698 0.93340 1.21055 0.96164 0.85994 0.88918 0.86916 1.89361 1.32013 1.35555 1.67752 1.21830 0.90974 0.96543 0.90186 1.21162 0.96176 0.99252 0.96024 1.20410 1.00158 0.97437 0.93464 1.21141 0.94800 0.97529 0.99946 1.21141 0.96611 1.00115 0.95676 1.20466 0.99406 0.96326 0.94711 1.21048 0.95939 0.98462 0.96764 1.22379 0.98079 0.93489 0.83161 0.89397 1.23211 0.97609 0.96462 1.01815 1.21031 0.82477 0.95070 0.95369 1.44314 1.05055 1.36056 1.47436 1.19044 0.87749 1.11859 1.16251 0.90622 1.24789 0.96778 0.98917 1.00265 1.69982 1.18854 1.28148 1.40141 0.86120 0.81445 0.78316 0.79914 1.21768 1.21747 1.20787 1.21929 0.92632 0.90489 0.95229 0.91835 0.92696 0.91886 0.90286 0.90833 0.88889 0.88189 0.88470 0.90784 0.85758 0.85561 0.85481 0.85552 0.92956 0.90804 0.93945 0.94040 0.93921 0.93238 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.06 5.93 -4.04 -0.02 1.04 16 3 N -0.61 -8.98 2.56 -163.68 -0.42 -9.40 16 4 C 0.51 8.10 6.86 -10.98 -0.08 8.02 16 5 O -0.50 -10.43 11.56 -6.34 -0.07 -10.50 16 6 C -0.15 -1.74 3.93 -27.88 -0.11 -1.85 16 7 C 0.14 1.72 2.94 -27.70 -0.08 1.64 16 8 H 0.11 1.55 7.98 -51.93 -0.41 1.14 16 9 O -0.33 -4.87 10.78 -47.13 -0.51 -5.38 16 10 C 0.08 0.86 7.39 36.20 0.27 1.13 16 11 C -0.13 -1.24 6.32 -104.40 -0.66 -1.90 16 12 C -0.10 -0.77 10.04 -39.66 -0.40 -1.17 16 13 C -0.12 -0.82 10.05 -39.55 -0.40 -1.22 16 14 C -0.12 -0.85 10.05 -39.55 -0.40 -1.25 16 15 C -0.09 -0.78 10.04 -39.66 -0.40 -1.18 16 16 C -0.12 -1.26 5.62 -104.40 -0.59 -1.85 16 17 C 0.13 2.48 3.55 -65.79 -0.23 2.25 16 18 H 0.09 1.54 7.86 -51.93 -0.41 1.14 16 19 C -0.15 -3.21 6.33 -24.89 -0.16 -3.37 16 20 C 0.19 4.93 5.37 -3.06 -0.02 4.91 16 21 N -0.60 -16.68 3.39 -170.07 -0.58 -17.26 16 22 C -0.22 -6.55 10.28 -15.06 -0.15 -6.71 16 23 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 24 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 25 N -0.92 -28.61 10.31 55.49 0.57 -28.04 16 26 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 30 C 0.12 2.86 6.58 -2.53 -0.02 2.84 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.51 7.22 -51.93 -0.38 0.13 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 35 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 36 H 0.09 0.93 7.02 -51.93 -0.36 0.57 16 37 H 0.10 0.88 7.40 -51.93 -0.38 0.50 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.07 1.67 6.25 -51.93 -0.32 1.34 16 46 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 47 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.05 1.23 5.53 -51.92 -0.29 0.95 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -36.38 392.23 -11.13 -47.50 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.85 Total: -0.74 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.16 Total: -0.27 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.42 Total: -54.69 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.58 Total: -15.88 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.38 -11.13 -47.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715042931.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.976 kcal (2) G-P(sol) polarization free energy of solvation -36.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds