Wall clock time and date at job start Wed Apr 1 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 5 5 O 1.21279 * 120.00472 * 179.97438 * 4 3 2 6 6 C 1.50706 * 120.00020 * 0.02562 * 4 3 2 7 7 C 1.52997 * 109.47238 * 180.02562 * 6 4 3 8 8 H 1.08997 * 110.13146 * 304.75470 * 7 6 4 9 9 O 1.43942 * 110.15520 * 66.45336 * 7 6 4 10 10 C 1.43939 * 104.95465 * 90.67911 * 9 7 6 11 11 C 1.51089 * 105.95343 * 28.44165 * 10 9 7 12 12 C 1.37961 * 132.68570 * 162.28706 * 11 10 9 13 13 C 1.38294 * 119.91736 * 180.02562 * 12 11 10 14 14 C 1.38260 * 120.04399 * 359.97438 * 13 12 11 15 15 C 1.38295 * 120.04071 * 0.03015 * 14 13 12 16 16 C 1.37973 * 119.91865 * 359.94889 * 15 14 13 17 17 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 18 18 H 1.09005 * 110.88532 * 356.12586 * 17 3 2 19 19 C 1.55159 * 111.00623 * 119.99809 * 17 3 2 20 20 C 1.54325 * 102.94170 * 153.58099 * 19 17 3 21 21 N 1.47023 * 107.27072 * 337.80601 * 20 19 17 22 22 C 1.36940 * 125.64562 * 178.98455 * 21 20 19 23 23 H 1.07993 * 119.99526 * 179.97438 * 22 21 20 24 24 C 1.38810 * 120.00334 * 359.97438 * 22 21 20 25 25 N 1.31626 * 119.99504 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00384 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46769 * 89.99765 * 26 24 22 28 28 H 1.48501 * 109.47320 * 210.00187 * 26 24 22 29 29 H 1.48506 * 109.47094 * 330.00485 * 26 24 22 30 30 C 1.47423 * 108.70337 * 358.94727 * 21 20 19 31 31 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 33 33 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 34 34 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 35 35 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 36 36 H 1.09001 * 109.46953 * 299.99667 * 6 4 3 37 37 H 1.09000 * 109.47318 * 59.99264 * 6 4 3 38 38 H 1.09003 * 110.15516 * 147.56455 * 10 9 7 39 39 H 1.08999 * 110.15291 * 269.32457 * 10 9 7 40 40 H 1.08000 * 120.04243 * 0.04726 * 12 11 10 41 41 H 1.08001 * 119.97525 * 180.02562 * 13 12 11 42 42 H 1.07995 * 119.98327 * 180.02562 * 14 13 12 43 43 H 1.07994 * 120.04048 * 179.97438 * 15 14 13 44 44 H 1.09001 * 110.72039 * 271.94115 * 19 17 3 45 45 H 1.08996 * 110.71723 * 35.21697 * 19 17 3 46 46 H 1.09004 * 109.88221 * 97.22764 * 20 19 17 47 47 H 1.09001 * 109.88185 * 218.23742 * 20 19 17 48 48 H 0.97002 * 119.99808 * 179.97438 * 25 24 22 49 49 H 1.09008 * 110.36130 * 265.28525 * 30 21 20 50 50 H 1.09004 * 110.36621 * 142.96734 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.6477 3.1597 1.1673 6 6 1.9925 1.3058 2.4723 7 6 2.3232 2.2433 3.6353 8 1 3.3447 2.6118 3.5413 9 8 1.3986 3.3462 3.6616 10 6 0.3216 2.9079 4.5100 11 6 0.9322 1.9258 5.4823 12 6 0.5069 1.4223 6.6943 13 6 1.2944 0.5146 7.3787 14 6 2.5061 0.1117 6.8488 15 6 2.9326 0.6164 5.6339 16 6 2.1468 1.5217 4.9508 17 6 2.2625 2.0719 -1.2686 18 1 2.0988 1.4026 -2.1133 19 6 1.3815 3.3436 -1.3880 20 6 2.2021 4.2449 -2.3345 21 7 3.5994 3.7929 -2.2651 22 6 4.6454 4.3219 -2.9732 23 1 5.6394 3.9178 -2.8509 24 6 4.4281 5.3774 -3.8481 25 7 3.2164 5.8696 -3.9974 26 14 5.8549 6.0995 -4.8134 27 1 5.9915 5.3815 -6.1062 28 1 5.5998 7.5395 -5.0714 29 1 7.1079 5.9513 -4.0302 30 6 3.6881 2.6765 -1.3064 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 0.9446 1.0112 2.5303 37 1 2.6229 0.4185 2.5298 38 1 -0.1013 3.7560 5.0485 39 1 -0.4492 2.4176 3.9153 40 1 -0.4400 1.7364 7.1080 41 1 0.9621 0.1195 8.3274 42 1 3.1201 -0.5976 7.3838 43 1 3.8793 0.3020 5.2201 44 1 0.4138 3.1024 -1.8280 45 1 1.2564 3.8187 -0.4151 46 1 1.8308 4.1465 -3.3546 47 1 2.1297 5.2837 -2.0124 48 1 3.0645 6.6074 -4.6085 49 1 3.9701 3.0452 -0.3200 50 1 4.4062 1.9339 -1.6542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715042931.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:50 Heat of formation + Delta-G solvation = -26.834073 kcal Electronic energy + Delta-G solvation = -30974.631770 eV Core-core repulsion = 26967.358766 eV Total energy + Delta-G solvation = -4007.273003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05213 -41.05728 -38.66665 -38.11740 -36.72902 -34.44201 -33.31677 -32.25154 -31.66576 -31.11182 -30.65796 -28.79054 -27.49493 -26.39906 -25.10131 -24.07672 -22.74289 -22.44239 -22.02384 -21.71570 -19.76797 -18.93011 -18.09051 -17.74964 -17.59761 -17.02317 -16.86746 -16.61760 -16.25870 -16.02983 -15.75936 -15.28442 -14.95957 -14.71954 -14.67119 -14.46662 -14.27598 -14.16677 -13.99903 -13.86194 -13.61814 -13.56250 -13.27142 -13.01558 -12.86591 -12.78874 -12.75882 -12.63403 -12.24226 -12.15825 -12.06532 -12.03421 -11.98678 -11.81770 -11.75188 -11.49336 -11.01753 -10.72359 -10.43413 -9.82678 -9.59700 -9.53366 -8.85314 -7.85297 -5.21426 0.27204 0.40420 1.42408 1.46616 1.55116 1.74861 1.98927 2.49771 2.74488 2.94992 3.18744 3.31899 3.53451 3.65510 3.71990 3.89143 3.94192 4.00065 4.09815 4.11681 4.20446 4.23196 4.27455 4.39647 4.41943 4.46642 4.54480 4.56275 4.61300 4.68409 4.69662 4.72173 4.84934 4.89733 4.93899 4.97651 5.01439 5.03399 5.10926 5.21006 5.40582 5.41986 5.44329 5.46229 5.55729 5.63796 5.69500 5.80569 5.83825 6.01842 6.17930 6.55838 7.08113 7.36238 7.75698 8.42129 9.25492 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.002580 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.675798 B =10850.404342 C =11356.526283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.504 3.496 5 O -0.560 6.560 6 C -0.137 4.137 7 C 0.134 3.866 8 H 0.085 0.915 9 O -0.372 6.372 10 C 0.077 3.923 11 C -0.139 4.139 12 C -0.101 4.101 13 C -0.114 4.114 14 C -0.117 4.117 15 C -0.098 4.098 16 C -0.137 4.137 17 C 0.154 3.846 18 H 0.110 0.890 19 C -0.135 4.135 20 C 0.197 3.803 21 N -0.623 5.623 22 C -0.243 4.243 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.954 5.954 26 Si 0.985 3.015 27 H -0.279 1.279 28 H -0.294 1.294 29 H -0.271 1.271 30 C 0.121 3.879 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.139 0.861 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.018 0.982 47 H -0.008 1.008 48 H 0.247 0.753 49 H 0.030 0.970 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 -21.188 23.221 32.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.293 3.707 5 O -0.438 6.438 6 C -0.177 4.177 7 C 0.076 3.924 8 H 0.103 0.897 9 O -0.291 6.291 10 C 0.000 4.000 11 C -0.139 4.139 12 C -0.119 4.119 13 C -0.131 4.131 14 C -0.134 4.134 15 C -0.116 4.116 16 C -0.138 4.138 17 C 0.049 3.951 18 H 0.128 0.872 19 C -0.174 4.174 20 C 0.071 3.929 21 N -0.350 5.350 22 C -0.372 4.372 23 H 0.098 0.902 24 C -0.263 4.263 25 N -0.603 5.603 26 Si 0.812 3.188 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.196 1.196 30 C -0.005 4.005 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.010 0.990 48 H 0.056 0.944 49 H 0.048 0.952 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.455 -20.246 22.965 31.761 hybrid contribution 0.599 1.151 -0.910 1.585 sum -7.855 -19.095 22.056 30.212 Atomic orbital electron populations 1.22198 0.95129 1.03427 1.01806 1.21939 0.95120 0.80116 1.05181 1.48048 1.65800 1.15357 1.04335 1.21084 0.76921 0.86467 0.86189 1.90776 1.45676 1.19759 1.87566 1.22137 1.05951 0.99713 0.89863 1.21000 0.94530 0.85955 0.90919 0.89742 1.89308 1.33542 1.37393 1.68835 1.21973 0.90282 0.97320 0.90375 1.21166 0.96253 0.99625 0.96857 1.20714 1.01162 0.97329 0.92654 1.21543 0.94358 0.96533 1.00687 1.21506 0.96928 0.99978 0.95024 1.20717 0.99688 0.95948 0.95230 1.20899 0.96971 0.99781 0.96131 1.21980 0.94101 0.93012 0.86038 0.87224 1.22968 0.98352 0.96640 0.99482 1.20733 0.83312 0.93764 0.95076 1.44638 1.05010 1.37439 1.47883 1.19468 0.88683 1.12407 1.16594 0.90156 1.25749 0.99674 0.99373 1.01547 1.70225 1.21021 1.28395 1.40682 0.84988 0.78286 0.76946 0.78550 1.20505 1.22050 1.19585 1.22015 0.95905 0.89519 0.93056 0.88881 0.92999 0.93564 0.88937 0.87690 0.86910 0.84959 0.87928 0.89768 0.83826 0.82736 0.82838 0.84330 0.90248 0.92582 0.96383 0.99024 0.94394 0.95211 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 71.98 0.74 -1.72 16 2 C 0.10 1.62 5.93 86.38 0.51 2.13 16 3 N -0.60 -16.99 2.56 -790.15 -2.02 -19.01 16 4 C 0.50 15.98 6.86 87.66 0.60 16.58 16 5 O -0.56 -24.66 11.56 8.35 0.10 -24.56 16 6 C -0.14 -2.92 3.93 29.85 0.12 -2.80 16 7 C 0.13 3.44 2.94 29.97 0.09 3.53 16 8 H 0.08 2.53 7.98 -2.39 -0.02 2.51 16 9 O -0.37 -11.60 10.78 -137.60 -1.48 -13.08 16 10 C 0.08 1.63 7.39 71.36 0.53 2.16 16 11 C -0.14 -2.58 6.32 -19.72 -0.12 -2.70 16 12 C -0.10 -1.35 10.04 22.22 0.22 -1.13 16 13 C -0.11 -1.19 10.05 22.29 0.22 -0.97 16 14 C -0.12 -1.29 10.05 22.29 0.22 -1.06 16 15 C -0.10 -1.46 10.04 22.22 0.22 -1.24 16 16 C -0.14 -2.72 5.62 -19.72 -0.11 -2.83 16 17 C 0.15 5.70 3.55 46.38 0.16 5.87 16 18 H 0.11 3.64 7.86 -2.38 -0.02 3.62 16 19 C -0.14 -5.89 6.33 31.78 0.20 -5.68 16 20 C 0.20 11.05 5.37 86.73 0.47 11.52 16 21 N -0.62 -35.99 3.39 -691.98 -2.35 -38.34 16 22 C -0.24 -14.88 10.28 84.03 0.86 -14.02 16 23 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 24 C -0.07 -4.35 5.49 84.86 0.47 -3.89 16 25 N -0.95 -61.77 10.31 21.65 0.22 -61.54 16 26 Si 0.98 48.80 29.55 68.60 2.03 50.82 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 30 C 0.12 5.71 6.58 86.85 0.57 6.28 16 31 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.05 0.80 7.22 -2.39 -0.02 0.78 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.35 7.93 -2.38 -0.02 1.33 16 35 H 0.10 1.13 6.44 -2.39 -0.02 1.12 16 36 H 0.11 1.98 7.02 -2.39 -0.02 1.97 16 37 H 0.13 1.92 7.40 -2.39 -0.02 1.91 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 43 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.06 2.66 6.25 -2.39 -0.01 2.64 16 46 H 0.02 1.08 7.38 -2.38 -0.02 1.06 16 47 H -0.01 -0.55 7.50 -2.39 -0.02 -0.57 16 48 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.03 1.56 5.53 -2.38 -0.01 1.55 16 50 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -86.21 392.23 3.39 -82.82 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.93 Total: 12.86 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.97 Total: 10.03 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -4.15 Total: -118.90 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.39 Total: -37.64 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.82 kcal Total: -86.21 3.39 -82.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715042931.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.986 kcal (2) G-P(sol) polarization free energy of solvation -86.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds