Wall clock time and date at job start Wed Apr 1 2020 02:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47069 * 2 1 4 4 C 1.34773 * 119.99681 * 90.00489 * 3 2 1 5 5 O 1.21277 * 120.00331 * 174.98058 * 4 3 2 6 6 C 1.50703 * 120.00288 * 354.97495 * 4 3 2 7 7 C 1.53000 * 109.47453 * 180.02562 * 6 4 3 8 8 H 1.09004 * 110.12573 * 304.75632 * 7 6 4 9 9 O 1.43938 * 110.15333 * 66.45233 * 7 6 4 10 10 C 1.43937 * 104.94749 * 90.68011 * 9 7 6 11 11 C 1.51086 * 105.95839 * 28.44451 * 10 9 7 12 12 C 1.37968 * 132.69013 * 162.31691 * 11 10 9 13 13 C 1.38298 * 119.91988 * 180.02562 * 12 11 10 14 14 C 1.38262 * 120.03769 * 0.02562 * 13 12 11 15 15 C 1.38294 * 120.04127 * 359.97033 * 14 13 12 16 16 C 1.37958 * 119.92085 * 0.02562 * 15 14 13 17 17 C 1.46494 * 120.00190 * 270.00186 * 3 2 1 18 18 H 1.08996 * 110.64242 * 178.16803 * 17 3 2 19 19 C 1.55155 * 110.72081 * 54.83002 * 17 3 2 20 20 C 1.54912 * 101.58082 * 277.13873 * 19 17 3 21 21 N 1.47426 * 104.83362 * 322.98960 * 20 19 17 22 22 C 1.36934 * 125.65172 * 204.16229 * 21 20 19 23 23 H 1.07999 * 120.00308 * 179.97438 * 22 21 20 24 24 C 1.38819 * 119.99811 * 359.96022 * 22 21 20 25 25 N 1.31620 * 119.99881 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00033 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47061 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47050 * 119.99972 * 26 24 22 29 29 H 1.48494 * 109.47386 * 240.00283 * 26 24 22 30 30 C 1.47024 * 108.69927 * 24.12776 * 21 20 19 31 31 H 1.09001 * 109.46853 * 299.99181 * 1 2 3 32 32 H 1.08994 * 109.47264 * 59.99995 * 1 2 3 33 33 H 1.08998 * 109.46606 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47216 * 240.00166 * 2 1 3 35 35 H 1.09001 * 109.47457 * 120.00369 * 2 1 3 36 36 H 1.08998 * 109.46763 * 60.00196 * 6 4 3 37 37 H 1.09006 * 109.47200 * 300.00499 * 6 4 3 38 38 H 1.09005 * 110.15883 * 147.56647 * 10 9 7 39 39 H 1.09004 * 110.15601 * 269.25115 * 10 9 7 40 40 H 1.08000 * 120.04255 * 359.97112 * 12 11 10 41 41 H 1.07996 * 119.97663 * 179.97438 * 13 12 11 42 42 H 1.08002 * 119.97670 * 179.97438 * 14 13 12 43 43 H 1.08007 * 120.03578 * 179.97438 * 15 14 13 44 44 H 1.09000 * 111.00220 * 35.20855 * 19 17 3 45 45 H 1.08998 * 111.00903 * 159.06446 * 19 17 3 46 46 H 1.09003 * 110.36956 * 204.14884 * 20 19 17 47 47 H 1.09004 * 110.36800 * 81.82445 * 20 19 17 48 48 H 0.96997 * 119.99969 * 179.97438 * 25 24 22 49 49 H 1.08996 * 109.88075 * 239.52157 * 30 21 20 50 50 H 1.09000 * 109.87938 * 118.36305 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7328 3.1260 1.1694 6 6 1.8856 1.3483 2.4698 7 6 2.2393 2.2768 3.6333 8 1 3.2891 2.5650 3.5774 9 8 1.4016 3.4469 3.6063 10 6 0.2604 3.1054 4.4143 11 6 0.7538 2.0958 5.4242 12 6 0.2417 1.6453 6.6236 13 6 0.9289 0.6918 7.3524 14 6 2.1279 0.1909 6.8799 15 6 2.6411 0.6424 5.6777 16 6 1.9556 1.5935 4.9506 17 6 2.2625 2.0719 -1.2687 18 1 2.5901 3.0963 -1.0917 19 6 0.9942 2.0436 -2.1620 20 6 1.1105 0.6475 -2.8230 21 7 2.5535 0.4616 -3.0611 22 6 3.1072 -0.3606 -4.0059 23 1 4.1808 -0.4268 -4.1017 24 6 2.2883 -1.1091 -4.8402 25 7 0.9798 -1.0290 -4.7229 26 14 3.0435 -2.2302 -6.1295 27 1 4.5240 -2.1410 -6.0570 28 1 2.6195 -3.6308 -5.8772 29 1 2.5875 -1.8103 -7.4789 30 6 3.2996 1.3059 -2.1166 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.4436 0.4168 2.5653 37 1 0.8168 1.1350 2.4876 38 1 -0.1181 3.9917 4.9235 39 1 -0.5212 2.6665 3.7940 40 1 -0.6942 2.0375 6.9933 41 1 0.5291 0.3389 8.2915 42 1 2.6639 -0.5534 7.4501 43 1 3.5779 0.2513 5.3089 44 1 0.0895 2.1159 -1.5584 45 1 1.0263 2.8346 -2.9113 46 1 0.5648 0.6277 -3.7664 47 1 0.7347 -0.1233 -2.1502 48 1 0.4076 -1.5517 -5.3061 49 1 3.9247 2.0113 -2.6640 50 1 3.9185 0.6825 -1.4712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715042942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:54 Heat of formation + Delta-G solvation = -1.257709 kcal Electronic energy + Delta-G solvation = -31076.650871 eV Core-core repulsion = 27070.486943 eV Total energy + Delta-G solvation = -4006.163929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18991 -39.84400 -37.82705 -37.19235 -34.72699 -32.75817 -32.10987 -31.55367 -30.48949 -30.27820 -29.16318 -27.18874 -26.47544 -24.63547 -24.22314 -22.90031 -21.83455 -21.55481 -20.30729 -20.12499 -18.45856 -17.38864 -17.01191 -16.88758 -16.49636 -16.33626 -15.70544 -15.38068 -14.98389 -14.69292 -14.40692 -14.07433 -13.93889 -13.77194 -13.49821 -13.38906 -13.12527 -12.93075 -12.73013 -12.46138 -12.16842 -12.13314 -11.94976 -11.89426 -11.61679 -11.52209 -11.41662 -11.11493 -11.04171 -10.89286 -10.87477 -10.41312 -10.22524 -10.16435 -10.10275 -9.84644 -9.54669 -9.38466 -9.19387 -8.85464 -8.65485 -8.21498 -6.84659 -5.68002 -3.09300 0.90216 1.00258 2.91369 3.23090 3.37380 3.39757 3.44011 3.45822 3.77706 3.92772 4.33023 4.47243 4.60103 4.69242 4.70734 4.90766 4.96964 5.10245 5.13435 5.18945 5.23942 5.28825 5.42014 5.44395 5.49211 5.52034 5.55719 5.65624 5.66547 5.72225 5.77335 5.83231 5.94079 6.03233 6.07280 6.10904 6.13161 6.19920 6.33870 6.43070 6.48542 6.54750 6.63997 6.65620 6.68836 6.76700 7.11202 7.48906 7.61616 7.80182 7.84638 8.33837 8.50782 9.19887 9.80349 10.45162 11.35468 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.002490 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.402998 B =11243.312673 C =11618.068868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.592 5.592 4 C 0.516 3.484 5 O -0.538 6.538 6 C -0.154 4.154 7 C 0.139 3.861 8 H 0.111 0.889 9 O -0.333 6.333 10 C 0.082 3.918 11 C -0.126 4.126 12 C -0.096 4.096 13 C -0.116 4.116 14 C -0.117 4.117 15 C -0.090 4.090 16 C -0.123 4.123 17 C 0.127 3.873 18 H 0.098 0.902 19 C -0.158 4.158 20 C 0.139 3.861 21 N -0.603 5.603 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 0.913 3.087 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.127 3.873 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.031 0.969 48 H 0.251 0.749 49 H 0.031 0.969 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 2.553 23.097 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.324 5.324 4 C 0.304 3.696 5 O -0.416 6.416 6 C -0.194 4.194 7 C 0.080 3.920 8 H 0.129 0.871 9 O -0.250 6.250 10 C 0.005 3.995 11 C -0.127 4.127 12 C -0.114 4.114 13 C -0.134 4.134 14 C -0.135 4.135 15 C -0.109 4.109 16 C -0.123 4.123 17 C 0.024 3.976 18 H 0.116 0.884 19 C -0.198 4.198 20 C 0.015 3.985 21 N -0.330 5.330 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.744 3.256 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.000 4.000 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.732 3.201 22.794 23.179 hybrid contribution 0.203 -1.042 -0.522 1.183 sum -2.530 2.159 22.271 22.518 Atomic orbital electron populations 1.22433 0.96096 1.02306 1.02464 1.21805 0.94525 0.82336 1.04062 1.47924 1.64838 1.14209 1.05417 1.20289 0.78317 0.85952 0.85050 1.90686 1.43851 1.19829 1.87199 1.22168 1.04319 0.99986 0.92934 1.21044 0.97173 0.84825 0.88938 0.87100 1.89311 1.31946 1.33923 1.69855 1.21827 0.90220 0.97061 0.90392 1.21137 0.96167 0.99200 0.96151 1.20409 1.00155 0.97541 0.93341 1.21146 0.95384 0.96926 0.99906 1.21149 0.96257 1.00067 0.96005 1.20466 0.99784 0.96184 0.94421 1.21026 0.96356 0.98214 0.96701 1.22092 0.96853 0.96408 0.82256 0.88364 1.23433 0.96024 1.02007 0.98302 1.22278 0.86058 0.89378 1.00803 1.44551 1.01563 1.49179 1.37659 1.19119 0.91514 1.15940 1.08272 0.90522 1.24763 0.95516 1.00446 0.99891 1.69809 1.01790 1.44377 1.41033 0.86020 0.78096 0.80166 0.81348 1.20596 1.21825 1.21794 1.21641 0.93579 0.93346 0.91429 0.93712 0.90309 0.91807 0.87228 0.91764 0.87970 0.88531 0.88521 0.90663 0.85746 0.85527 0.85441 0.85538 0.91774 0.91243 0.87880 0.95085 0.93840 0.95071 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 9.06 37.16 0.34 -2.12 16 2 C 0.10 1.47 4.97 -4.04 -0.02 1.45 16 3 N -0.59 -9.84 2.45 -164.03 -0.40 -10.24 16 4 C 0.52 8.37 7.56 -10.99 -0.08 8.29 16 5 O -0.54 -10.49 14.90 -6.38 -0.10 -10.59 16 6 C -0.15 -1.89 4.05 -27.88 -0.11 -2.00 16 7 C 0.14 1.72 2.93 -27.69 -0.08 1.64 16 8 H 0.11 1.45 7.98 -51.93 -0.41 1.03 16 9 O -0.33 -4.70 10.78 -47.17 -0.51 -5.20 16 10 C 0.08 0.85 7.39 36.19 0.27 1.12 16 11 C -0.13 -1.26 6.32 -104.40 -0.66 -1.92 16 12 C -0.10 -0.79 10.04 -39.66 -0.40 -1.18 16 13 C -0.12 -0.85 10.05 -39.55 -0.40 -1.24 16 14 C -0.12 -0.88 10.05 -39.55 -0.40 -1.28 16 15 C -0.09 -0.80 10.04 -39.66 -0.40 -1.20 16 16 C -0.12 -1.29 5.63 -104.41 -0.59 -1.88 16 17 C 0.13 2.39 3.58 -66.10 -0.24 2.15 16 18 H 0.10 1.89 7.01 -51.93 -0.36 1.53 16 19 C -0.16 -3.02 6.09 -24.58 -0.15 -3.17 16 20 C 0.14 3.17 4.65 -2.53 -0.01 3.16 16 21 N -0.60 -14.81 2.97 -170.07 -0.51 -15.31 16 22 C -0.22 -5.95 10.27 -15.06 -0.15 -6.11 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 25 N -0.92 -25.84 10.09 55.49 0.56 -25.28 16 26 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 C 0.13 2.69 6.25 -3.06 -0.02 2.67 16 31 H 0.04 0.55 6.94 -51.93 -0.36 0.19 16 32 H 0.08 1.26 4.34 -51.93 -0.23 1.03 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 2.09 5.18 -51.93 -0.27 1.82 16 35 H 0.06 0.82 6.48 -51.93 -0.34 0.48 16 36 H 0.10 1.06 7.25 -51.93 -0.38 0.68 16 37 H 0.10 1.11 6.77 -51.93 -0.35 0.76 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 44 H 0.06 1.12 6.44 -51.93 -0.33 0.79 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.10 2.72 5.87 -51.93 -0.31 2.42 16 47 H 0.03 0.71 4.03 -51.93 -0.21 0.50 16 48 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.03 0.55 8.04 -51.93 -0.42 0.14 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -31.73 381.92 -10.73 -42.47 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.32 Total: 3.81 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -3.20 Total: -2.04 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.35 Total: -50.84 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.60 Total: -15.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.73 -10.73 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715042942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.211 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds