Wall clock time and date at job start Wed Apr 1 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47069 * 2 1 4 4 C 1.34773 * 119.99681 * 90.00489 * 3 2 1 5 5 O 1.21277 * 120.00331 * 174.98058 * 4 3 2 6 6 C 1.50703 * 120.00288 * 354.97495 * 4 3 2 7 7 C 1.53000 * 109.47453 * 180.02562 * 6 4 3 8 8 H 1.09004 * 110.12573 * 304.75632 * 7 6 4 9 9 O 1.43938 * 110.15333 * 66.45233 * 7 6 4 10 10 C 1.43937 * 104.94749 * 90.68011 * 9 7 6 11 11 C 1.51086 * 105.95839 * 28.44451 * 10 9 7 12 12 C 1.37968 * 132.69013 * 162.31691 * 11 10 9 13 13 C 1.38298 * 119.91988 * 180.02562 * 12 11 10 14 14 C 1.38262 * 120.03769 * 0.02562 * 13 12 11 15 15 C 1.38294 * 120.04127 * 359.97033 * 14 13 12 16 16 C 1.37958 * 119.92085 * 0.02562 * 15 14 13 17 17 C 1.46494 * 120.00190 * 270.00186 * 3 2 1 18 18 H 1.08996 * 110.64242 * 178.16803 * 17 3 2 19 19 C 1.55155 * 110.72081 * 54.83002 * 17 3 2 20 20 C 1.54912 * 101.58082 * 277.13873 * 19 17 3 21 21 N 1.47426 * 104.83362 * 322.98960 * 20 19 17 22 22 C 1.36934 * 125.65172 * 204.16229 * 21 20 19 23 23 H 1.07999 * 120.00308 * 179.97438 * 22 21 20 24 24 C 1.38819 * 119.99811 * 359.96022 * 22 21 20 25 25 N 1.31620 * 119.99881 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00033 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47061 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47050 * 119.99972 * 26 24 22 29 29 H 1.48494 * 109.47386 * 240.00283 * 26 24 22 30 30 C 1.47024 * 108.69927 * 24.12776 * 21 20 19 31 31 H 1.09001 * 109.46853 * 299.99181 * 1 2 3 32 32 H 1.08994 * 109.47264 * 59.99995 * 1 2 3 33 33 H 1.08998 * 109.46606 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47216 * 240.00166 * 2 1 3 35 35 H 1.09001 * 109.47457 * 120.00369 * 2 1 3 36 36 H 1.08998 * 109.46763 * 60.00196 * 6 4 3 37 37 H 1.09006 * 109.47200 * 300.00499 * 6 4 3 38 38 H 1.09005 * 110.15883 * 147.56647 * 10 9 7 39 39 H 1.09004 * 110.15601 * 269.25115 * 10 9 7 40 40 H 1.08000 * 120.04255 * 359.97112 * 12 11 10 41 41 H 1.07996 * 119.97663 * 179.97438 * 13 12 11 42 42 H 1.08002 * 119.97670 * 179.97438 * 14 13 12 43 43 H 1.08007 * 120.03578 * 179.97438 * 15 14 13 44 44 H 1.09000 * 111.00220 * 35.20855 * 19 17 3 45 45 H 1.08998 * 111.00903 * 159.06446 * 19 17 3 46 46 H 1.09003 * 110.36956 * 204.14884 * 20 19 17 47 47 H 1.09004 * 110.36800 * 81.82445 * 20 19 17 48 48 H 0.96997 * 119.99969 * 179.97438 * 25 24 22 49 49 H 1.08996 * 109.88075 * 239.52157 * 30 21 20 50 50 H 1.09000 * 109.87938 * 118.36305 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7328 3.1260 1.1694 6 6 1.8856 1.3483 2.4698 7 6 2.2393 2.2768 3.6333 8 1 3.2891 2.5650 3.5774 9 8 1.4016 3.4469 3.6063 10 6 0.2604 3.1054 4.4143 11 6 0.7538 2.0958 5.4242 12 6 0.2417 1.6453 6.6236 13 6 0.9289 0.6918 7.3524 14 6 2.1279 0.1909 6.8799 15 6 2.6411 0.6424 5.6777 16 6 1.9556 1.5935 4.9506 17 6 2.2625 2.0719 -1.2687 18 1 2.5901 3.0963 -1.0917 19 6 0.9942 2.0436 -2.1620 20 6 1.1105 0.6475 -2.8230 21 7 2.5535 0.4616 -3.0611 22 6 3.1072 -0.3606 -4.0059 23 1 4.1808 -0.4268 -4.1017 24 6 2.2883 -1.1091 -4.8402 25 7 0.9798 -1.0290 -4.7229 26 14 3.0435 -2.2302 -6.1295 27 1 4.5240 -2.1410 -6.0570 28 1 2.6195 -3.6308 -5.8772 29 1 2.5875 -1.8103 -7.4789 30 6 3.2996 1.3059 -2.1166 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.4436 0.4168 2.5653 37 1 0.8168 1.1350 2.4876 38 1 -0.1181 3.9917 4.9235 39 1 -0.5212 2.6665 3.7940 40 1 -0.6942 2.0375 6.9933 41 1 0.5291 0.3389 8.2915 42 1 2.6639 -0.5534 7.4501 43 1 3.5779 0.2513 5.3089 44 1 0.0895 2.1159 -1.5584 45 1 1.0263 2.8346 -2.9113 46 1 0.5648 0.6277 -3.7664 47 1 0.7347 -0.1233 -2.1502 48 1 0.4076 -1.5517 -5.3061 49 1 3.9247 2.0113 -2.6640 50 1 3.9185 0.6825 -1.4712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715042942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:53 Heat of formation + Delta-G solvation = -18.056233 kcal Electronic energy + Delta-G solvation = -31077.379310 eV Core-core repulsion = 27070.486943 eV Total energy + Delta-G solvation = -4006.892368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.05763 -41.13579 -39.11437 -38.20194 -36.28268 -34.28170 -33.28655 -32.24890 -31.87321 -31.34346 -30.73524 -28.64952 -27.50940 -26.43935 -25.11704 -24.13359 -22.63739 -22.40189 -22.02453 -21.48221 -19.82758 -18.92827 -18.55903 -17.76217 -17.51479 -17.25162 -16.75337 -16.64752 -16.28881 -16.11259 -15.63413 -15.45157 -15.16161 -14.71325 -14.65964 -14.41659 -14.30134 -13.97153 -13.81507 -13.72473 -13.54164 -13.37622 -13.35123 -13.02303 -12.94122 -12.85643 -12.81938 -12.71275 -12.28494 -12.15885 -11.98652 -11.98392 -11.77633 -11.75444 -11.65200 -11.39871 -11.02079 -10.75364 -10.64075 -9.83117 -9.63936 -9.53679 -8.84033 -7.74596 -5.17894 0.27057 0.40386 1.47983 1.49159 1.58708 1.63987 1.98115 2.50828 2.74421 2.93474 3.18189 3.35426 3.51526 3.63741 3.72977 3.87595 3.91897 4.00102 4.05365 4.08202 4.17455 4.22213 4.31356 4.40678 4.42095 4.46301 4.55439 4.56764 4.63092 4.65674 4.69927 4.71494 4.84420 4.85389 4.93430 4.95055 4.97217 5.02466 5.10646 5.21226 5.40631 5.42859 5.45926 5.49613 5.55686 5.65103 5.73303 5.81606 5.86066 6.01658 6.34556 6.50411 7.14339 7.20499 7.79804 8.44079 9.26471 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.002490 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.402998 B =11243.312673 C =11618.068868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.592 5.592 4 C 0.515 3.485 5 O -0.574 6.574 6 C -0.142 4.142 7 C 0.139 3.861 8 H 0.093 0.907 9 O -0.367 6.367 10 C 0.077 3.923 11 C -0.139 4.139 12 C -0.101 4.101 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.099 4.099 16 C -0.140 4.140 17 C 0.139 3.861 18 H 0.095 0.905 19 C -0.144 4.144 20 C 0.148 3.852 21 N -0.618 5.618 22 C -0.236 4.236 23 H 0.075 0.925 24 C -0.060 4.060 25 N -0.942 5.942 26 Si 0.975 3.025 27 H -0.272 1.272 28 H -0.290 1.290 29 H -0.294 1.294 30 C 0.129 3.871 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.138 0.862 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.247 0.753 49 H 0.027 0.973 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 1.381 25.728 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.324 5.324 4 C 0.305 3.695 5 O -0.454 6.454 6 C -0.182 4.182 7 C 0.080 3.920 8 H 0.111 0.889 9 O -0.285 6.285 10 C 0.001 3.999 11 C -0.139 4.139 12 C -0.119 4.119 13 C -0.132 4.132 14 C -0.136 4.136 15 C -0.117 4.117 16 C -0.140 4.140 17 C 0.034 3.966 18 H 0.113 0.887 19 C -0.183 4.183 20 C 0.023 3.977 21 N -0.345 5.345 22 C -0.365 4.365 23 H 0.093 0.907 24 C -0.253 4.253 25 N -0.592 5.592 26 Si 0.804 3.196 27 H -0.197 1.197 28 H -0.217 1.217 29 H -0.221 1.221 30 C 0.002 3.998 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.163 0.837 41 H 0.172 0.828 42 H 0.170 0.830 43 H 0.156 0.844 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.045 0.955 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.220 2.026 25.449 25.732 hybrid contribution 0.375 -0.660 -1.264 1.475 sum -2.845 1.366 24.185 24.390 Atomic orbital electron populations 1.22347 0.94876 1.03036 1.02402 1.21805 0.95460 0.81319 1.03779 1.47962 1.64924 1.14687 1.04817 1.20968 0.77149 0.85515 0.85871 1.90672 1.45409 1.21604 1.87708 1.22154 1.05354 1.00353 0.90300 1.20968 0.96137 0.84668 0.90194 0.88884 1.89263 1.33336 1.35176 1.70763 1.21977 0.89329 0.98024 0.90559 1.21194 0.96317 0.99471 0.96924 1.20721 1.01003 0.97532 0.92619 1.21543 0.95018 0.96021 1.00606 1.21501 0.96452 1.00160 0.95513 1.20715 1.00211 0.95886 0.94883 1.20915 0.97319 0.99506 0.96267 1.21798 0.95661 0.96060 0.83039 0.88670 1.23280 0.97122 0.99622 0.98279 1.22069 0.84832 0.91504 0.99256 1.44739 1.02645 1.49242 1.37863 1.19389 0.91680 1.16425 1.08963 0.90742 1.25498 0.96028 1.01965 1.01766 1.70037 1.02653 1.44894 1.41582 0.85054 0.77746 0.78163 0.78599 1.19671 1.21736 1.22112 1.21679 0.94020 0.92913 0.91152 0.91489 0.92511 0.90721 0.90925 0.88557 0.85680 0.87148 0.87376 0.89984 0.83728 0.82824 0.83025 0.84441 0.89854 0.91457 0.91571 0.94839 0.94336 0.95548 0.95795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 9.06 71.98 0.65 -3.78 16 2 C 0.10 2.90 4.97 86.38 0.43 3.33 16 3 N -0.59 -19.23 2.45 -791.27 -1.94 -21.17 16 4 C 0.52 16.28 7.56 87.66 0.66 16.94 16 5 O -0.57 -22.50 14.90 8.39 0.13 -22.37 16 6 C -0.14 -3.23 4.05 29.85 0.12 -3.11 16 7 C 0.14 3.35 2.93 29.97 0.09 3.44 16 8 H 0.09 2.49 7.98 -2.38 -0.02 2.47 16 9 O -0.37 -10.30 10.78 -137.57 -1.48 -11.78 16 10 C 0.08 1.52 7.39 71.36 0.53 2.05 16 11 C -0.14 -2.52 6.32 -19.72 -0.12 -2.64 16 12 C -0.10 -1.36 10.04 22.22 0.22 -1.13 16 13 C -0.11 -1.26 10.05 22.29 0.22 -1.04 16 14 C -0.12 -1.41 10.05 22.29 0.22 -1.18 16 15 C -0.10 -1.53 10.04 22.22 0.22 -1.31 16 16 C -0.14 -2.73 5.63 -19.72 -0.11 -2.84 16 17 C 0.14 5.23 3.58 46.18 0.17 5.39 16 18 H 0.10 3.69 7.01 -2.39 -0.02 3.67 16 19 C -0.14 -5.52 6.09 31.99 0.19 -5.32 16 20 C 0.15 6.87 4.65 86.86 0.40 7.27 16 21 N -0.62 -31.03 2.97 -691.97 -2.06 -33.08 16 22 C -0.24 -12.96 10.27 84.04 0.86 -12.10 16 23 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 24 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 25 N -0.94 -53.93 10.09 21.65 0.22 -53.71 16 26 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 29 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 30 C 0.13 5.55 6.25 86.73 0.54 6.09 16 31 H 0.07 1.46 6.94 -2.39 -0.02 1.44 16 32 H 0.06 1.75 4.34 -2.39 -0.01 1.74 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.75 5.18 -2.39 -0.01 2.74 16 35 H 0.10 2.20 6.48 -2.39 -0.02 2.18 16 36 H 0.13 2.25 7.25 -2.39 -0.02 2.24 16 37 H 0.11 2.23 6.77 -2.38 -0.02 2.22 16 38 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 43 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.08 2.87 6.44 -2.39 -0.02 2.86 16 45 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.07 3.61 5.87 -2.39 -0.01 3.60 16 47 H 0.03 1.55 4.03 -2.39 -0.01 1.54 16 48 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 49 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.02 1.04 8.04 -2.39 -0.02 1.02 16 Total: -1.00 -70.24 381.92 3.62 -66.62 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.95 Total: 21.29 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.77 Total: 7.24 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.78 Total: -107.96 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.36 Total: -34.16 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.24 3.62 -66.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715042942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.565 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds