Wall clock time and date at job start Wed Apr 1 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46873 * 2 1 4 4 C 1.42903 * 114.00250 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47210 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47262 * 180.02562 * 5 4 3 7 7 N 1.46892 * 109.47390 * 179.97438 * 6 5 4 8 8 C 1.46842 * 111.00192 * 293.95474 * 7 6 5 9 9 C 1.53039 * 109.52666 * 185.84212 * 8 7 6 10 10 C 1.53123 * 109.27546 * 300.81951 * 9 8 7 11 11 C 1.53120 * 109.21163 * 57.62218 * 10 9 8 12 12 H 1.09003 * 109.50116 * 182.43702 * 11 10 9 13 13 N 1.46500 * 109.50551 * 62.32206 * 11 10 9 14 14 C 1.34773 * 120.00283 * 84.99474 * 13 11 10 15 15 O 1.21277 * 119.99690 * 0.02562 * 14 13 11 16 16 C 1.50700 * 120.00050 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.47082 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99784 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99968 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99763 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 59.99472 * 22 20 18 24 24 H 1.48493 * 109.46969 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46728 * 299.99658 * 22 20 18 26 26 C 1.46848 * 110.99938 * 58.16403 * 7 6 5 27 27 H 1.08999 * 109.46555 * 294.17605 * 26 7 6 28 28 C 1.53008 * 109.46220 * 54.15669 * 26 7 6 29 29 H 1.08997 * 109.47224 * 60.00267 * 1 2 3 30 30 H 1.09008 * 109.46680 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47127 * 299.99576 * 1 2 3 32 32 H 1.09001 * 109.47127 * 240.00424 * 2 1 3 33 33 H 1.08997 * 109.47224 * 119.99733 * 2 1 3 34 34 H 1.08992 * 109.46808 * 60.00021 * 4 3 2 35 35 H 1.09004 * 109.46913 * 300.00555 * 4 3 2 36 36 H 1.09001 * 109.47256 * 60.00400 * 5 4 3 37 37 H 1.08991 * 109.47606 * 299.99838 * 5 4 3 38 38 H 1.08997 * 109.47211 * 59.99509 * 6 5 4 39 39 H 1.09004 * 109.46865 * 300.00315 * 6 5 4 40 40 H 1.08997 * 109.46434 * 65.82550 * 8 7 6 41 41 H 1.09006 * 109.45199 * 305.85056 * 8 7 6 42 42 H 1.08999 * 109.50420 * 180.88146 * 9 8 7 43 43 H 1.09002 * 109.53427 * 60.77649 * 9 8 7 44 44 H 1.09002 * 109.52319 * 177.56011 * 10 9 8 45 45 H 1.08995 * 109.52318 * 297.68693 * 10 9 8 46 46 H 0.97005 * 119.99213 * 265.00018 * 13 11 10 47 47 H 1.09002 * 109.47252 * 300.00187 * 16 14 13 48 48 H 1.09002 * 109.46869 * 59.99963 * 16 14 13 49 49 H 0.96999 * 120.00228 * 180.02562 * 21 20 18 50 50 H 1.08997 * 109.47127 * 60.00255 * 28 26 7 51 51 H 1.08996 * 109.46794 * 179.97438 * 28 26 7 52 52 H 1.08991 * 109.46722 * 299.99948 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 0.0012 6 6 5.3505 3.0594 0.0012 7 7 5.7292 4.4787 0.0011 8 6 5.3270 5.1306 -1.2517 9 6 5.8637 6.5636 -1.2778 10 6 5.3060 7.3342 -0.0778 11 6 5.6967 6.6084 1.2126 12 1 5.2655 7.1291 2.0677 13 7 7.1561 6.5852 1.3382 14 6 7.8022 7.6338 1.8854 15 8 7.1753 8.5964 2.2743 16 6 9.3035 7.6101 2.0141 17 16 9.8675 9.1489 2.7822 18 6 11.6053 8.8588 2.8081 19 1 12.0045 7.9352 2.4158 20 6 12.4611 9.8170 3.3337 21 7 11.9745 10.9425 3.8123 22 14 14.3034 9.5092 3.3618 23 1 14.7937 9.3128 1.9739 24 1 14.9911 10.6770 3.9687 25 1 14.5898 8.2932 4.1647 26 6 5.1661 5.1736 1.1658 27 1 4.0791 5.1917 1.0875 28 6 5.5730 4.4379 2.4442 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8340 0.9766 -0.8891 35 1 3.8333 0.9768 0.8908 36 1 3.4222 3.4217 0.8912 37 1 3.4229 3.4223 -0.8887 38 1 5.7533 2.5762 -0.8890 39 1 5.7533 2.5755 0.8909 40 1 4.2393 5.1490 -1.3187 41 1 5.7337 4.5751 -2.0968 42 1 5.5518 7.0523 -2.2009 43 1 6.9523 6.5462 -1.2251 44 1 5.7198 8.3425 -0.0682 45 1 4.2199 7.3868 -0.1516 46 1 7.6574 5.8151 1.0274 47 1 9.6018 6.7645 2.6338 48 1 9.7513 7.5118 1.0252 49 1 12.5725 11.6122 4.1793 50 1 6.6600 4.4195 2.5225 51 1 5.1555 4.9539 3.3088 52 1 5.1936 3.4167 2.4120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717862167.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:56 Heat of formation + Delta-G solvation = -95.356066 kcal Electronic energy + Delta-G solvation = -28360.125883 eV Core-core repulsion = 24485.325495 eV Total energy + Delta-G solvation = -3874.800388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50721 -38.76660 -38.22370 -35.33914 -33.46848 -32.56524 -32.38532 -31.50781 -30.39986 -28.78736 -26.98003 -25.80119 -25.41931 -23.36893 -23.25352 -22.36654 -21.49598 -20.29591 -18.87063 -17.83663 -17.20556 -16.88623 -16.44636 -16.16576 -15.74124 -15.37033 -15.17207 -14.94181 -14.76924 -14.63552 -14.15878 -14.01083 -13.92321 -13.45670 -13.25793 -13.04123 -12.87638 -12.74412 -12.52211 -12.39217 -12.24706 -12.16143 -11.98613 -11.84744 -11.78040 -11.62228 -11.40787 -11.16431 -11.00857 -10.99770 -10.84571 -10.72987 -10.65389 -10.34069 -10.04894 -9.77095 -9.26186 -9.02020 -8.75867 -8.51584 -8.17650 -6.44240 -6.17333 -3.87127 3.11767 3.16747 3.22747 3.26383 3.30507 3.35868 3.57211 3.89756 4.25063 4.43142 4.46827 4.56256 4.59686 4.65405 4.76634 4.81523 4.83136 4.88914 4.92676 4.98658 5.08259 5.12663 5.16055 5.17650 5.26143 5.27661 5.31447 5.35732 5.41865 5.50043 5.55392 5.57528 5.63026 5.66555 5.70797 5.73449 5.79955 5.88325 5.95679 5.98893 6.08119 6.19807 6.22595 6.24285 6.70807 6.75123 6.82145 6.92290 7.63554 7.95273 8.39405 8.77913 9.27869 10.90021 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.001837 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.010667 B =15241.322405 C =15577.212605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.067 3.933 5 C -0.158 4.158 6 C 0.056 3.944 7 N -0.527 5.527 8 C 0.054 3.946 9 C -0.116 4.116 10 C -0.135 4.135 11 C 0.158 3.842 12 H 0.090 0.910 13 N -0.720 5.720 14 C 0.531 3.469 15 O -0.523 6.523 16 C -0.152 4.152 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.072 3.928 27 H 0.057 0.943 28 C -0.149 4.149 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.404 0.596 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.268 0.732 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.835 -22.731 -10.626 31.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.311 6.311 4 C -0.010 4.010 5 C -0.198 4.198 6 C -0.072 4.072 7 N -0.251 5.251 8 C -0.074 4.074 9 C -0.154 4.154 10 C -0.174 4.174 11 C 0.052 3.948 12 H 0.108 0.892 13 N -0.374 5.374 14 C 0.317 3.683 15 O -0.398 6.398 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.037 4.037 27 H 0.075 0.925 28 C -0.206 4.206 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.239 0.761 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.444 -20.745 -9.851 30.747 hybrid contribution 1.397 -2.005 -0.713 2.546 sum -19.047 -22.751 -10.564 31.496 Atomic orbital electron populations 1.21750 0.93709 1.02278 1.03198 1.22454 0.95668 0.83804 1.00020 1.87896 1.21334 1.26464 1.95435 1.22408 0.81160 0.97301 1.00127 1.22252 0.98276 0.95544 1.03684 1.22179 0.92004 0.89757 1.03310 1.62146 1.59087 1.01594 1.02283 1.22153 0.98075 0.95544 0.91635 1.21552 1.01959 0.93856 0.97987 1.22001 1.00398 1.00346 0.94659 1.20868 0.81817 0.93892 0.98194 0.89216 1.45925 1.06548 1.20973 1.63987 1.20282 0.89540 0.82130 0.76343 1.90685 1.68349 1.33118 1.47691 1.23515 0.93930 1.07530 1.05279 1.85365 1.04878 1.15401 1.77777 1.22844 0.91710 1.06636 1.47174 0.91031 1.24979 0.99484 0.94464 0.94606 1.70009 1.35660 1.06828 1.37859 0.86241 0.82981 0.77875 0.78503 1.19970 1.20845 1.19971 1.21939 0.97254 0.93497 0.90963 0.92535 1.21916 1.03048 0.99751 0.95932 0.91863 0.91078 0.91798 0.93482 0.93417 0.93372 0.93278 0.90660 0.90999 0.90502 0.89862 0.94560 0.90735 0.91597 0.90762 0.90656 0.91737 0.76056 0.89432 0.89412 0.92191 0.91243 0.91861 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.41 16 2 C 0.06 0.35 6.66 37.16 0.25 0.60 16 3 O -0.39 -3.39 10.34 -35.23 -0.36 -3.75 16 4 C 0.07 0.45 5.94 37.15 0.22 0.67 16 5 C -0.16 -1.09 4.78 -26.73 -0.13 -1.22 16 6 C 0.06 0.37 4.79 -3.83 -0.02 0.35 16 7 N -0.53 -4.32 4.17 -226.68 -0.95 -5.27 16 8 C 0.05 0.43 5.05 -3.84 -0.02 0.41 16 9 C -0.12 -1.12 5.93 -26.65 -0.16 -1.28 16 10 C -0.14 -1.55 5.67 -26.61 -0.15 -1.70 16 11 C 0.16 1.90 2.26 -67.84 -0.15 1.75 16 12 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 13 N -0.72 -9.83 3.71 -53.72 -0.20 -10.03 16 14 C 0.53 9.95 7.81 -10.99 -0.09 9.87 16 15 O -0.52 -11.87 15.53 5.56 0.09 -11.78 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.07 0.66 1.54 -67.71 -0.10 0.56 16 27 H 0.06 0.51 6.61 -51.93 -0.34 0.17 16 28 C -0.15 -1.33 8.52 37.16 0.32 -1.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.60 6.24 -51.93 -0.32 0.27 16 37 H 0.07 0.55 6.68 -51.93 -0.35 0.20 16 38 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 39 H 0.08 0.53 6.33 -51.93 -0.33 0.20 16 40 H 0.04 0.29 6.75 -51.93 -0.35 -0.06 16 41 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.40 4.86 7.90 -40.82 -0.32 4.54 16 47 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 48 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 49 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.07 0.69 7.39 -51.93 -0.38 0.30 16 51 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 52 H 0.06 0.43 6.07 -51.93 -0.32 0.12 16 LS Contribution 416.17 15.07 6.27 6.27 Total: -1.00 -33.81 416.17 -10.27 -44.08 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -9.39 Total: 0.86 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.77 Total: -7.40 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.41 Total: -40.95 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.28 Total: -15.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.81 -10.27 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717862167.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.276 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds